>P47068:BBC1_YEAST Myosin tail region-interacting protein MTI1 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 1157
 Score = 36.6 bits (83), Expect = 0.21
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 14  PLLSADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALS 142
           P+ SA +    P +P + P   +P+ P  PP+P  S  PPALS
Sbjct: 702 PVPSAPSVPSAPPVPPAPPALSAPSVPPVPPVPPVSSAPPALS 744

>Q4R4R4:PRAF3_MACFA PRA1 family protein 3 - Macaca fascicularis (Crab eating macaque)|
           (Cynomolgus monkey)
          Length = 188

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFAQPDFRDISKWNNRVVSNLLYYQTNY 47

>P46040:NIFZ_FRAAL Protein nifZ - Frankia alni|
          Length = 192

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 23  SADTASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASR 169
           +AD    +P  P    +  +PA+P  P  PA   +P   ++G G+P ++
Sbjct: 140 AADAEPAVPSTPAEPAKAATPAKPATPAKPAPPAKPAGKTVGAGTPGAK 188

>Q63327:MOBP_RAT Myelin-associated oligodendrocyte basic protein - Rattus norvegicus|
           (Rat)
          Length = 170

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +2

Query: 47  PKIPKSKPRKLSPARPNNPPIPAESRRP 130
           P  PKS PR   PA+P +PPIPA+ R P
Sbjct: 93  PAKPKSPPR---PAKPRSPPIPAKPRSP 117

>P18887:XRCC1_HUMAN DNA-repair protein XRCC1 - Homo sapiens (Human)|
          Length = 633

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +2

Query: 50  KIPKSKPRKLSPARPNNPPIPAESRRP-----PALSLGFGSPASRGRGAD 184
           K P   P +LSP+ P  P +PA +R P     PA + G  +   RG G +
Sbjct: 256 KTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPRGEGTE 305

>Q9ES40:PRAF3_RAT PRA1 family protein 3 - Rattus norvegicus (Rat)|
          Length = 188

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

>Q5R4X8:PRAF3_PONPY PRA1 family protein 3 - Pongo pygmaeus (Orangutan)|
          Length = 188

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

>Q56P28:PRAF3_PIG PRA1 family protein 3 - Sus scrofa (Pig)|
          Length = 188

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

>Q8R5J9:PRAF3_MOUSE PRA1 family protein 3 - Mus musculus (Mouse)|
          Length = 188

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

>O75915:PRAF3_HUMAN PRA1 family protein 3 - Homo sapiens (Human)|
          Length = 188

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

>Q5E9M1:PRAF3_BOVIN PRA1 family protein 3 - Bos taurus (Bovine)|
          Length = 188

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  R  SKW +R+  NL YY+TNY
Sbjct: 7   PLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNY 47

>P48309:PIV6_ADE40 Minor capsid protein 6 precursor - Human adenovirus 40 (HAdV-40)|
          Length = 267

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +2

Query: 59  KSKP--RKLSPARPNNPPIPAES-----RRPPALSLGFGSPASRGRGADW 187
           +SKP   +L P  P  PP+PA +      RP A ++   +PA R RGA+W
Sbjct: 197 ESKPVTLELPPPVPTVPPMPAPTLGTAVSRPTAPTVAVATPARRPRGANW 246

>Q8IV90:WASF4_HUMAN Wiskott-Aldrich syndrome protein family member 4 - Homo sapiens|
           (Human)
          Length = 625

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 56  PKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 166
           P SKP    P  P  PP P     PP   +GFGSP +
Sbjct: 438 PSSKPGFAPPPAPPPPPPPMIGIPPPPPPIGFGSPGT 474

>Q15583:TGIF1_HUMAN Homeobox protein TGIF1 - Homo sapiens (Human)|
          Length = 401

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 8   SSPLLSADTASFLPKIPKSK---PRKLSPARPNNPPIPAESRRPPALSLGFGSPASRGRG 178
           +SP LS  T ++LP  P S    P  L  +    PP PA   +P ALS   G+ A   R 
Sbjct: 48  ASPRLSRGTLAYLPPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSQELGTKAGPRRP 107

Query: 179 ADW 187
             W
Sbjct: 108 HRW 110

>P03337:GAG_FSVGA Gag polyprotein [Contains: Core protein p15; Core protein p12; Core|
           protein p30] - Feline sarcoma virus (strain
           Gardner-Arnstein) (Ga-FeSV) (Gardner-Arnstein feline
           leukemia oncovirus B)
          Length = 425

 Score = 32.7 bits (73), Expect = 3.0
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 11  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPASRGR 175
           SP  SA  T+S  P +PKS P K  + P  P++P I   +  PP    G G P S  R
Sbjct: 192 SPQPSAPLTSSLYPVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 249

>Q757V8:GAR1_ASHGO H/ACA ribonucleoprotein complex subunit 1 - Ashbya gossypii (Yeast)|
           (Eremothecium gossypii)
          Length = 212

 Score = 32.3 bits (72), Expect = 3.9
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 177 PRPRLAGEPKP-RERAGGRRLSAGMGGLFGRAG 82
           P+P++AG PKP R+RA G   + G GG  GR G
Sbjct: 125 PKPKVAGPPKPKRKRAAGG--APGRGGFGGRGG 155

>Q00112:VG48_ICHV1 Uncharacterized gene 48 protein - Ictalurid herpesvirus 1 (IcHV-1)|
           (Channel catfish herpesvirus)
          Length = 278

 Score = 32.0 bits (71), Expect = 5.1
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 56  PKSKPRKLSPARPNNPPIPAESRRPPAL---SLGFGSPASRGRGADW 187
           P  +PR +SP  P  P  P + ++ PAL   +L F +PA   RG DW
Sbjct: 43  PAEQPRAISP-EPVTPKKPKQPKKRPALKQPTLPFAAPAK--RGMDW 86

>P48311:DPOL_ADE40 DNA polymerase - Human adenovirus 40 (HAdV-40)|
          Length = 1188

 Score = 32.0 bits (71), Expect = 5.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 32  TASFLPKIPKSKPRKLSPARPNNPPIPAESRRPPALSLGFGSPASRGRG 178
           TA   P   ++  R+ + A P  PP    S RPPA +    +P SR RG
Sbjct: 32  TAGAAPTATRAPRRRAATASPGEPPSTTASGRPPAANNVSLTPNSRLRG 80

>P03340:GAG_FSVMD Gag polyprotein [Contains: Core protein p15; Core protein p12; Core|
           protein p30; Core protein p10] - Feline sarcoma virus
           (strain McDonough)
          Length = 536

 Score = 31.6 bits (70), Expect = 6.7
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 11  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPAS 166
           SP  SA  T+S  P +PK+ P K  + P  P++P I   +  PP    G G P S
Sbjct: 192 SPQPSAPPTSSLYPVLPKTNPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPS 246

>P20186:YT35_STRFR Hypothetical 35.5 kDa protein in transposon Tn4556 - Streptomyces|
           fradiae
          Length = 348

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 8   SSPLLSADTASFLPKIPK----SKPRKLSPARPNNPPIPAESRRPPALSLGFGSPAS 166
           SSP  +A  A    ++P+    S PR  S  RP  PPIPA +R PP  + G   PA+
Sbjct: 243 SSPQAAAPAAPSATRLPRRTTPSAPRPSS--RPARPPIPA-ARPPPRRTPGTPRPAA 296

>Q5F433:PRAF3_CHICK PRA1 family protein 3 - Gallus gallus (Chicken)|
          Length = 188

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 PPRPVPEFF---SRFTVP--RSYSKWTSRLKCNLYYYRTNY 377
           P R   +FF    RF  P  +  SKW +R+  NL YY+TNY
Sbjct: 7   PLRSWEDFFPGSDRFGRPDFKDISKWNNRVVNNLLYYQTNY 47

>Q86VI4:LAP4B_HUMAN Lysosomal-associated transmembrane protein 4B - Homo sapiens|
           (Human)
          Length = 370

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 189 IGSPAMDWSAVT-AEDLVAALREVDWSTPPRPVP 287
           +G+PA  WS+ +  E  + +   V W +PPRP+P
Sbjct: 37  LGAPAAAWSSSSWLEPAMTSRTRVTWPSPPRPLP 70

>P03338:GAG_FSVST Gag polyprotein [Contains: Core protein p15; Core protein p12; Core|
           protein p30] - Feline sarcoma virus (strain
           Snyder-Theilen)
          Length = 371

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 11  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPASRGR 175
           SP  SA  T+S  P +PK  P K  + P  P++P I   +  PP    G G P S  R
Sbjct: 189 SPQPSAPLTSSLYPVVPKPDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 246

>P10262:GAG_FLV Gag polyprotein [Contains: Core protein p15; Core protein p12; Core|
           protein p30; Core protein p10] - Feline leukemia virus
          Length = 580

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 11  SPLLSAD-TASFLPKIPKSKPRK--LSPARPNNPPIPAESRRPPALSLGFGSPASRGR 175
           SP  SA  T+S  P +PK  P K  + P  P++P I   +  PP    G G P S  R
Sbjct: 189 SPQPSAPLTSSLYPVVPKPDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPR 246

>Q6FSB0:GAR1_CANGA H/ACA ribonucleoprotein complex subunit 1 - Candida glabrata|
           (Yeast) (Torulopsis glabrata)
          Length = 222

 Score = 31.2 bits (69), Expect = 8.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 177 PRPRLAGEPKPRERAGGRRLSAGMGGL---FGRAGESFLGF 64
           P+P++AG PKP+ +       AG GG    FG  G S  GF
Sbjct: 125 PKPKVAGPPKPKNKKKRSGAPAGRGGARGGFGGRGGSRGGF 165


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 187,773,143
Number of extensions: 4143147
Number of successful extensions: 13335
Number of sequences better than 10.0: 25
Number of HSP's gapped: 13276
Number of HSP's successfully gapped: 25
Length of query: 394
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 279
Effective length of database: 69,142,514
Effective search space: 19290761406
Effective search space used: 19290761406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)