ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf62g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q95KI1:TB22A_MACFA TBC1 domain family member 22A - Macaca fascic... 36 0.13
2Q8WUA7:TB22A_HUMAN TBC1 domain family member 22A - Homo sapiens ... 36 0.13
3Q4V9Y5:CRLD2_XENTR Cysteine-rich secretory protein LCCL domain-c... 36 0.16
4A2VEC9:SSPO_HUMAN SCO-spondin precursor - Homo sapiens (Human) 31 5.3
5Q7TQ48:SRCA_MOUSE Sarcalumenin precursor - Mus musculus (Mouse) 31 5.3

>Q95KI1:TB22A_MACFA TBC1 domain family member 22A - Macaca fascicularis (Crab eating|
           macaque) (Cynomolgus monkey)
          Length = 497
 Score = 36.2 bits (82), Expect = 0.13
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +3

Query: 69  LLSPRGRRQSRPPLWSGSAPEATPGLCSPRPPKVAGGDDQLLCGVADAHAQCHGVGANDV 248
           +L    +RQ RP L  G   +  P      PP    GD +L+  V+++H  C    A+D 
Sbjct: 81  VLRNHSQRQGRPTLQEGPGLQQKPRP-EAEPPSPPSGDLRLVKSVSESHTSCPAESASDA 139

Query: 249 AP 254
           AP
Sbjct: 140 AP 141



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>Q8WUA7:TB22A_HUMAN TBC1 domain family member 22A - Homo sapiens (Human)|
          Length = 517

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +3

Query: 69  LLSPRGRRQSRPPLWSGSAPEATPGLCSPRPPKVAGGDDQLLCGVADAHAQCHGVGANDV 248
           +L    +RQ RP L  G   +  P      PP    GD +L+  V+++H  C    A+D 
Sbjct: 101 VLRNHSQRQGRPTLQEGPGLQQKPRP-EAEPPSPPSGDLRLVKSVSESHTSCPAESASDA 159

Query: 249 AP 254
           AP
Sbjct: 160 AP 161



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>Q4V9Y5:CRLD2_XENTR Cysteine-rich secretory protein LCCL domain-containing 2 precursor|
           - Xenopus tropicalis (Western clawed frog) (Silurana
           tropicalis)
          Length = 500

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
 Frame = +3

Query: 66  CLLSPRGRRQSRPPLWSGSAPEATPGLCSPRPPKVAGGDDQLLCGVADAHAQCHGVGAND 245
           C  SP+G        W G AP      CS  PP   G     LC   D H    G+  N+
Sbjct: 199 CNYSPKGN-------WIGEAPYKNGRPCSECPPSYGGNCQNNLCYKGDKHYGREGIVTNE 251

Query: 246 V-APCHPGSHWVW 281
           V  P  P    VW
Sbjct: 252 VETPRFPEETPVW 264



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>A2VEC9:SSPO_HUMAN SCO-spondin precursor - Homo sapiens (Human)|
          Length = 5147

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 289  SANQTQCEPGWQGATSL-APTPWHCAWASATPHRSWSSPPATLGGRGEQ 146
            + N   C+ G    T+   P P HCAW+  +   +WS    + G RG+Q
Sbjct: 4136 ACNNCSCQAGQLSCTAQPCPPPTHCAWSHWS---AWSPCSHSCGPRGQQ 4181



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>Q7TQ48:SRCA_MOUSE Sarcalumenin precursor - Mus musculus (Mouse)|
          Length = 910

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 199 PHRSWSSPPATLGGRGEQRPGVASGAEPDQ 110
           PH + + PP  + G  E+RP  +SG EP Q
Sbjct: 125 PHAAGTLPPGGIEGPEEERPQFSSGKEPGQ 154


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 108,682,105
Number of extensions: 2317153
Number of successful extensions: 6480
Number of sequences better than 10.0: 5
Number of HSP's gapped: 6479
Number of HSP's successfully gapped: 5
Length of query: 236
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 126
Effective length of database: 70,513,989
Effective search space: 8884762614
Effective search space used: 8884762614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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