ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62g07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT828116.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA048O05, full insert sequence Length = 719 Score = 165 bits (83), Expect = 3e-37 Identities = 252/306 (82%), Gaps = 3/306 (0%) Strand = Plus / Plus Query: 22 gccgccgtcgccgccgcgagatccttcctccgatccggatctgctgcctcctc-tc--tc 78 ||||||| ||||||||||||||| ||||| ||||| ||| || ||||||| || || Sbjct: 46 gccgccgccgccgccgcgagatcgttccttcgatcgggagtcgcctcctcctcgtccatc 105 Query: 79 cgcggggccgccgccagagccgccccccgctctggtccggctccgctcccgaggcgactc 138 ||||| |||||||| |||||||| |||| |||| |||||||||||||||||| | || Sbjct: 106 cgcggcgccgccgcgagagccgcatcccgagctgggccggctccgctcccgaggaggctg 165 Query: 139 ccggcctctgctccccgcgtcctcccaaggtcgccggtggtgatgaccagcttctgtgtg 198 || ||| |||||||||| || || ||||||||||||| ||||| |||| |||| || Sbjct: 166 cccgccgctgctccccgtctcatcttgaggtcgccggtggagatgagcagcgtctgcttg 225 Query: 199 gagtcgctgatgcccatgcacagtgccacggcgtcggcgctaatgacgtcgctccttgcc 258 ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct: 226 gagacgctgatgcccatgcacagcgccacggcgtcggcgctcatgacgtcgctcctcgct 285 Query: 259 accccggctcgcactgggtttggttggctgacagaaggtcaggacgaaactagatgaaca 318 |||| || ||| | ||||| ||||| | |||||||| |||||||||||||||||| Sbjct: 286 gcccctgcgtgcaggagctttggctggctctccgaaggtcaagacgaaactagatgaaca 345 Query: 319 tcaagc 324 ||||| Sbjct: 346 ccaagc 351 Score = 48.1 bits (24), Expect = 0.043 Identities = 30/32 (93%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgc 38 ||||||| |||||||||||||| ||||||||| Sbjct: 22 cgccccgacgcaatggccgccgccgccgccgc 53
>ref|NM_001050811.1| Oryza sativa (japonica cultivar-group) Os01g0754000 (Os01g0754000) mRNA, complete cds Length = 634 Score = 159 bits (80), Expect = 2e-35 Identities = 210/251 (83%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgcgagatccttcctccgatccggatctgct 66 ||||||| |||||||||| ||| ||||||||||||||| ||||| ||||| ||| || Sbjct: 22 cgccccgacgcaatggccaccgccgccgccgcgagatcgttccttcgatcgggagtcgcc 81 Query: 67 gcctcctc-tc--tccgcggggccgccgccagagccgccccccgctctggtccggctccg 123 ||||||| || ||||||| |||||||| |||||||| |||| | || ||||||||| Sbjct: 82 tcctcctcgtccatccgcggcgccgccgcgagagccgcatcccgagccgggccggctccg 141 Query: 124 ctcccgaggcgactcccggcctctgctccccgcgtcctcccaaggtcgccggtggtgatg 183 ||||||||| | || || ||| |||||||||| || || ||||||||||||| |||| Sbjct: 142 ctcccgaggaggctgcccgccgctgctccccgtctcatcttgaggtcgccggtggagatg 201 Query: 184 accagcttctgtgtggagtcgctgatgcccatgcacagtgccacggcgtcggcgctaatg 243 | |||| |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 202 agcagcgtctgcttggagacgctgatgcccatgcacagcgccacggcgtcggcgctcatg 261 Query: 244 acgtcgctcct 254 ||||||||||| Sbjct: 262 acgtcgctcct 272
>dbj|AK107856.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-B02, full insert sequence Length = 998 Score = 159 bits (80), Expect = 2e-35 Identities = 210/251 (83%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgcgagatccttcctccgatccggatctgct 66 ||||||| |||||||||| ||| ||||||||||||||| ||||| ||||| ||| || Sbjct: 458 cgccccgacgcaatggccaccgccgccgccgcgagatcgttccttcgatcgggagtcgcc 517 Query: 67 gcctcctc-tc--tccgcggggccgccgccagagccgccccccgctctggtccggctccg 123 ||||||| || ||||||| |||||||| |||||||| |||| | || ||||||||| Sbjct: 518 tcctcctcgtccatccgcggcgccgccgcgagagccgcatcccgagccgggccggctccg 577 Query: 124 ctcccgaggcgactcccggcctctgctccccgcgtcctcccaaggtcgccggtggtgatg 183 ||||||||| | || || ||| |||||||||| || || ||||||||||||| |||| Sbjct: 578 ctcccgaggaggctgcccgccgctgctccccgtctcatcttgaggtcgccggtggagatg 637 Query: 184 accagcttctgtgtggagtcgctgatgcccatgcacagtgccacggcgtcggcgctaatg 243 | |||| |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 638 agcagcgtctgcttggagacgctgatgcccatgcacagcgccacggcgtcggcgctcatg 697 Query: 244 acgtcgctcct 254 ||||||||||| Sbjct: 698 acgtcgctcct 708
>dbj|AK063730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E05, full insert sequence Length = 634 Score = 159 bits (80), Expect = 2e-35 Identities = 210/251 (83%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgcgagatccttcctccgatccggatctgct 66 ||||||| |||||||||| ||| ||||||||||||||| ||||| ||||| ||| || Sbjct: 22 cgccccgacgcaatggccaccgccgccgccgcgagatcgttccttcgatcgggagtcgcc 81 Query: 67 gcctcctc-tc--tccgcggggccgccgccagagccgccccccgctctggtccggctccg 123 ||||||| || ||||||| |||||||| |||||||| |||| | || ||||||||| Sbjct: 82 tcctcctcgtccatccgcggcgccgccgcgagagccgcatcccgagccgggccggctccg 141 Query: 124 ctcccgaggcgactcccggcctctgctccccgcgtcctcccaaggtcgccggtggtgatg 183 ||||||||| | || || ||| |||||||||| || || ||||||||||||| |||| Sbjct: 142 ctcccgaggaggctgcccgccgctgctccccgtctcatcttgaggtcgccggtggagatg 201 Query: 184 accagcttctgtgtggagtcgctgatgcccatgcacagtgccacggcgtcggcgctaatg 243 | |||| |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 202 agcagcgtctgcttggagacgctgatgcccatgcacagcgccacggcgtcggcgctcatg 261 Query: 244 acgtcgctcct 254 ||||||||||| Sbjct: 262 acgtcgctcct 272
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 166 aggtcgccggtggtgatgaccagcttctgtgtggagtcgctgatgcccatgcacagtgcc 225 ||||||||||||| ||||| |||| |||| ||||| ||||||||||||||||||| ||| Sbjct: 31629155 aggtcgccggtggagatgagcagcgtctgcttggagacgctgatgcccatgcacagcgcc 31629214 Query: 226 acggcgtcggcgctaatgacgtcgctcct 254 |||||||||||||| |||||||||||||| Sbjct: 31629215 acggcgtcggcgctcatgacgtcgctcct 31629243 Score = 73.8 bits (37), Expect = 8e-10 Identities = 125/152 (82%), Gaps = 3/152 (1%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgcgagatccttcctccgatccggatctgct 66 ||||||| |||||||||| ||| ||||||||||||||| ||||| ||||| ||| || Sbjct: 31628872 cgccccgacgcaatggccaccgccgccgccgcgagatcgttccttcgatcgggagtcgcc 31628931 Query: 67 gcctcctc-tc--tccgcggggccgccgccagagccgccccccgctctggtccggctccg 123 ||||||| || ||||||| |||||||| |||||||| |||| | || ||||||||| Sbjct: 31628932 tcctcctcgtccatccgcggcgccgccgcgagagccgcatcccgagccgggccggctccg 31628991 Query: 124 ctcccgaggcgactcccggcctctgctccccg 155 ||||||||| | || || ||| |||||||||| Sbjct: 31628992 ctcccgaggaggctgcccgccgctgctccccg 31629023 Score = 65.9 bits (33), Expect = 2e-07 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 488 ttggagcttagattatt-cgtttctatttgtagatggatgatttcttcttgttggagcct 546 ||||| |||||||| || |||||||||||||||||||||||||| || || | ||||||| Sbjct: 31631296 ttggatcttagattgttgcgtttctatttgtagatggatgatttgttgttatcggagcct 31631355 Query: 547 gctgtgatggtacctgctacg 567 | ||||| | || |||||||| Sbjct: 31631356 gatgtgacgatagctgctacg 31631376 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 294 aggtcaggacgaaactagatgaacatcaagccccaaa 330 |||||| |||||||||||||||||| ||||| ||||| Sbjct: 31630194 aggtcaagacgaaactagatgaacaccaagcaccaaa 31630230
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 166 aggtcgccggtggtgatgaccagcttctgtgtggagtcgctgatgcccatgcacagtgcc 225 ||||||||||||| ||||| |||| |||| ||||| ||||||||||||||||||| ||| Sbjct: 42887 aggtcgccggtggagatgagcagcgtctgcttggagacgctgatgcccatgcacagcgcc 42946 Query: 226 acggcgtcggcgctaatgacgtcgctcct 254 |||||||||||||| |||||||||||||| Sbjct: 42947 acggcgtcggcgctcatgacgtcgctcct 42975 Score = 73.8 bits (37), Expect = 8e-10 Identities = 125/152 (82%), Gaps = 3/152 (1%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgcgagatccttcctccgatccggatctgct 66 ||||||| |||||||||| ||| ||||||||||||||| ||||| ||||| ||| || Sbjct: 42604 cgccccgacgcaatggccaccgccgccgccgcgagatcgttccttcgatcgggagtcgcc 42663 Query: 67 gcctcctc-tc--tccgcggggccgccgccagagccgccccccgctctggtccggctccg 123 ||||||| || ||||||| |||||||| |||||||| |||| | || ||||||||| Sbjct: 42664 tcctcctcgtccatccgcggcgccgccgcgagagccgcatcccgagccgggccggctccg 42723 Query: 124 ctcccgaggcgactcccggcctctgctccccg 155 ||||||||| | || || ||| |||||||||| Sbjct: 42724 ctcccgaggaggctgcccgccgctgctccccg 42755 Score = 65.9 bits (33), Expect = 2e-07 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 488 ttggagcttagattatt-cgtttctatttgtagatggatgatttcttcttgttggagcct 546 ||||| |||||||| || |||||||||||||||||||||||||| || || | ||||||| Sbjct: 45028 ttggatcttagattgttgcgtttctatttgtagatggatgatttgttgttatcggagcct 45087 Query: 547 gctgtgatggtacctgctacg 567 | ||||| | || |||||||| Sbjct: 45088 gatgtgacgatagctgctacg 45108 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 294 aggtcaggacgaaactagatgaacatcaagccccaaa 330 |||||| |||||||||||||||||| ||||| ||||| Sbjct: 43926 aggtcaagacgaaactagatgaacaccaagcaccaaa 43962
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 166 aggtcgccggtggtgatgaccagcttctgtgtggagtcgctgatgcccatgcacagtgcc 225 ||||||||||||| ||||| |||| |||| ||||| ||||||||||||||||||| ||| Sbjct: 142178 aggtcgccggtggagatgagcagcgtctgcttggagacgctgatgcccatgcacagcgcc 142237 Query: 226 acggcgtcggcgctaatgacgtcgctcct 254 |||||||||||||| |||||||||||||| Sbjct: 142238 acggcgtcggcgctcatgacgtcgctcct 142266 Score = 73.8 bits (37), Expect = 8e-10 Identities = 125/152 (82%), Gaps = 3/152 (1%) Strand = Plus / Plus Query: 7 cgccccgccgcaatggccgccgtcgccgccgcgagatccttcctccgatccggatctgct 66 ||||||| |||||||||| ||| ||||||||||||||| ||||| ||||| ||| || Sbjct: 141895 cgccccgacgcaatggccaccgccgccgccgcgagatcgttccttcgatcgggagtcgcc 141954 Query: 67 gcctcctc-tc--tccgcggggccgccgccagagccgccccccgctctggtccggctccg 123 ||||||| || ||||||| |||||||| |||||||| |||| | || ||||||||| Sbjct: 141955 tcctcctcgtccatccgcggcgccgccgcgagagccgcatcccgagccgggccggctccg 142014 Query: 124 ctcccgaggcgactcccggcctctgctccccg 155 ||||||||| | || || ||| |||||||||| Sbjct: 142015 ctcccgaggaggctgcccgccgctgctccccg 142046 Score = 65.9 bits (33), Expect = 2e-07 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 488 ttggagcttagattatt-cgtttctatttgtagatggatgatttcttcttgttggagcct 546 ||||| |||||||| || |||||||||||||||||||||||||| || || | ||||||| Sbjct: 144319 ttggatcttagattgttgcgtttctatttgtagatggatgatttgttgttatcggagcct 144378 Query: 547 gctgtgatggtacctgctacg 567 | ||||| | || |||||||| Sbjct: 144379 gatgtgacgatagctgctacg 144399 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 294 aggtcaggacgaaactagatgaacatcaagccccaaa 330 |||||| |||||||||||||||||| ||||| ||||| Sbjct: 143217 aggtcaagacgaaactagatgaacaccaagcaccaaa 143253
>gb|AC113280.12| Mus musculus chromosome 1, clone RP23-391E12, complete sequence Length = 217982 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 614 agtctgtactatcctgggattttggtt 640 |||||||||||||||||| |||||||| Sbjct: 144295 agtctgtactatcctgggtttttggtt 144321
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 16 gcaatggccgccgtcgccgccgc 38 ||||||||||||||||||||||| Sbjct: 2982465 gcaatggccgccgtcgccgccgc 2982443
>gb|AC111099.15| Mus musculus chromosome 1, clone RP23-177A20, complete sequence Length = 195979 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Minus Query: 614 agtctgtactatcctgggattttggtt 640 |||||||||||||||||| |||||||| Sbjct: 184363 agtctgtactatcctgggtttttggtt 184337
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 16 gcaatggccgccgtcgccgccgc 38 ||||||||||||||||||||||| Sbjct: 142611 gcaatggccgccgtcgccgccgc 142589
>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0702F05 Length = 145018 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 16 gcaatggccgccgtcgccgccgc 38 ||||||||||||||||||||||| Sbjct: 70414 gcaatggccgccgtcgccgccgc 70392
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gatccttcctccgatccggatc 62 |||||||||||||||||||||| Sbjct: 1190104 gatccttcctccgatccggatc 1190083
>ref|NM_138235.1| Drosophila melanogaster CG13912-RA (CG13912), mRNA Length = 704 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gatccttcctccgatccggatc 62 |||||||||||||||||||||| Sbjct: 448 gatccttcctccgatccggatc 427
>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187438 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gatccttcctccgatccggatc 62 |||||||||||||||||||||| Sbjct: 151583 gatccttcctccgatccggatc 151562
>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170465 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gatccttcctccgatccggatc 62 |||||||||||||||||||||| Sbjct: 71262 gatccttcctccgatccggatc 71241
>gb|BT022087.1| Drosophila melanogaster RE20371 full insert cDNA Length = 833 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 gatccttcctccgatccggatc 62 |||||||||||||||||||||| Sbjct: 448 gatccttcctccgatccggatc 427
>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230), DS03404 (D231), DS06962 (D232), and DS07291 (D240)), complete sequence Length = 268369 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 41 gatccttcctccgatccggatc 62 |||||||||||||||||||||| Sbjct: 253936 gatccttcctccgatccggatc 253957
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ggccgccgtcgccgccgcgag 41 ||||||||||||||||||||| Sbjct: 5153407 ggccgccgtcgccgccgcgag 5153427
>emb|AM404177.1| Hordeum vulgare ipk gene for inositol phosphate kinase Length = 1498 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 ccgcaatggccgccgtcgccgccgc 38 ||||||||||||||| ||||||||| Sbjct: 15 ccgcaatggccgccgccgccgccgc 39
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cgccggtggtgatgaccagct 190 ||||||||||||||||||||| Sbjct: 5849392 cgccggtggtgatgaccagct 5849412
>gb|AY523974.1|AY523972S3 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 21577 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 tggccgccgtcgccgccgcga 40 ||||||||||||||||||||| Sbjct: 11315 tggccgccgtcgccgccgcga 11295
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 aaattgaatttaaagtgcact 596 ||||||||||||||||||||| Sbjct: 14588051 aaattgaatttaaagtgcact 14588031 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 576 aaattgaatttaaagtgcact 596 ||||||||||||||||||||| Sbjct: 15326236 aaattgaatttaaagtgcact 15326256
>emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 in linkage group 12, complete sequence Length = 157568 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 398 tgtatctgctttattttgcaaagtg 422 ||||| ||||||||||||||||||| Sbjct: 28764 tgtatttgctttattttgcaaagtg 28788
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tggccgccgtcgccgccgcga 40 ||||||||||||||||||||| Sbjct: 4664039 tggccgccgtcgccgccgcga 4664059
>gb|AC005304.1|AC005304 Homo sapiens chromosome 17, clone hRPK.131_K_5, complete sequence Length = 164017 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 catgccttttatttttgccat 396 ||||||||||||||||||||| Sbjct: 48431 catgccttttatttttgccat 48411
>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07, complete sequence Length = 157622 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 576 aaattgaatttaaagtgcact 596 ||||||||||||||||||||| Sbjct: 15120 aaattgaatttaaagtgcact 15140
>emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15, complete sequence Length = 150562 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 aaattgaatttaaagtgcact 596 ||||||||||||||||||||| Sbjct: 56188 aaattgaatttaaagtgcact 56168 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 136,213,267 Number of extensions: 7784181 Number of successful extensions: 172904 Number of sequences better than 10.0: 28 Number of HSP's gapped: 172900 Number of HSP's successfully gapped: 47 Length of query: 710 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 688 Effective length of database: 18,508,616,841 Effective search space: 12733928386608 Effective search space used: 12733928386608 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
