Clone Information

BLAST Search Result

Clone Name	FLbaf62f01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001070085.1\| Oryza sativa (japonica cultivar-group) Os09g...	547	e-152
2	dbj\|AK107282.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	547	e-152
3	dbj\|AK101317.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	547	e-152
4	gb\|AY029561.1\| Zea mays putative methyl-binding domain protein M...	454	e-124
5	gb\|AY029560.1\| Zea mays putative methyl-binding domain protein M...	446	e-121
6	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	361	5e-96
7	gb\|AY108523.1\| Zea mays PCO097059 mRNA sequence	125	5e-25
8	gb\|AY111995.1\| Zea mays CL7274_1 mRNA sequence	117	1e-22
9	ref\|NM_001065023.1\| Oryza sativa (japonica cultivar-group) Os06g...	58	1e-04
10	emb\|CT989192.1\| Eucalyptus globulus EST from juvenile versus mat...	58	1e-04
11	emb\|CT989123.1\| Eucalyptus globulus EST from juvenile versus mat...	58	1e-04
12	dbj\|AB025636.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	54	0.002
13	gb\|AF058826.1\|AF058826 Arabidopsis thaliana BAC T26D22	54	0.002
14	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.024
15	dbj\|AP003726.3\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.024
16	dbj\|AK228378.1\| Arabidopsis thaliana mRNA for hypothetical prote...	48	0.096
17	gb\|BT025800.1\| Arabidopsis thaliana At5g35330 mRNA, complete cds	48	0.096
18	ref\|NM_203121.1\| Arabidopsis thaliana MBD02; DNA binding (MBD02)...	48	0.096
19	ref\|NM_122924.1\| Arabidopsis thaliana MBD02; DNA binding (MBD02)...	48	0.096
20	gb\|AY088026.1\| Arabidopsis thaliana clone 40501 mRNA, complete s...	48	0.096
21	gb\|BT005718.1\| Arabidopsis thaliana clone RAFL14-84-M19 (R20358)...	48	0.096
22	emb\|BX830346.1\|CNS0A1K9 Arabidopsis thaliana Full-length cDNA Co...	48	0.096
23	emb\|CR382129.1\| Yarrowia lipolytica chromosome C of strain CLIB1...	46	0.38
24	gb\|AC144578.2\| Homo sapiens chromosome 8, clone XXfos-802716D4, ...	44	1.5
25	emb\|AL691420.13\| Human DNA sequence from clone RP11-352C6 on chr...	44	1.5
26	gb\|AC135075.5\| Homo sapiens chromosome 8, clone RP11-557G24, com...	44	1.5
27	dbj\|AP006255.1\| Homo sapiens genomic DNA, chromosome 9, clone:RP...	44	1.5
28	dbj\|AP006210.1\| Homo sapiens genomic DNA, chromosome 9, clone:RP...	44	1.5
29	dbj\|AB020872.1\| Homo sapiens genomic DNA of 9q32 anti-oncogene o...	44	1.5
30	ref\|NW_001091934.1\| Theileria annulata strain Ankara clone C6	42	5.9
31	ref\|XM_001096271.1\| PREDICTED: Macaca mulatta similar to prophet...	42	5.9
32	gb\|AC159994.7\| Mus musculus chromosome 7, clone RP23-368F23, com...	42	5.9
33	gb\|AC154508.2\| Mus musculus BAC clone RP24-96P6 from chromosome ...	42	5.9
34	gb\|BC034347.1\| Mus musculus RIKEN cDNA C530044N13 gene, mRNA (cD...	42	5.9
35	gb\|AC012391.10\| Homo sapiens chromosome 10 clone RP11-162A23, co...	42	5.9
36	gb\|AC154509.2\| Mus musculus BAC clone RP23-207P21 from chromosom...	42	5.9
37	dbj\|AK133977.1\| Mus musculus 8 days embryo whole body cDNA, RIKE...	42	5.9
38	dbj\|AK029379.1\| Mus musculus 0 day neonate head cDNA, RIKEN full...	42	5.9
39	dbj\|AK080876.1\| Mus musculus 4 days neonate male adipose cDNA, R...	42	5.9
40	dbj\|AK032288.1\| Mus musculus adult male olfactory brain cDNA, RI...	42	5.9
41	ref\|NM_146067.2\| Mus musculus RIKEN cDNA C530044N13 gene (C53004...	42	5.9
42	gb\|BC025476.1\| Mus musculus RIKEN cDNA C530044N13 gene, mRNA (cD...	42	5.9
43	gb\|AC087318.33\| Homo sapiens 12 BAC RP11-73M14 (Roswell Park Can...	42	5.9
44	ref\|XM_949746.1\| Theileria annulata strain Ankara hypothetical p...	42	5.9

>ref|NM_001070085.1| Oryza sativa (japonica cultivar-group) Os09g0494300 (Os09g0494300)
            mRNA, complete cds
          Length = 1747
 Score =  547 bits (276), Expect = e-152
 Identities = 408/452 (90%)
 Strand = Plus / Plus

                                                                        
Query: 425  gccatgtattggggcattcactatccagtgtgctaggtgcttcaaatggagacttattcc 484
            ||||| |||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||
Sbjct: 627  gccatctattggggcattcactgtccaatgtgccaagtgtttcaaatggagacttattcc 686

                                                                        
Query: 485  aacgaaagagaagtacgaagaaatacgtgagcatattatacaggaaccttttgactgcga 544
             || ||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||
Sbjct: 687  gacaaaagagaagtatgaagaaattcgtgagtgtattatacaggaaccttttgagtgcga 746

                                                                        
Query: 545  acgagcccgtgaatggaaacctgatgtaacatgcgatgatcaagaagatatatctcagga 604
            |||||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||
Sbjct: 747  acgagcccgtgagtggagacctgatgtaacatgtaatgatccagaagatatatctcagga 806

                                                                        
Query: 605  tggaagcagactctgggctatcgacaaacccaatattgcacagcctcctgctggatggga 664
            ||||||||| || |||||||| |||||||||||||||||||  |||||| ||||||||||
Sbjct: 807  tggaagcaggctttgggctattgacaaacccaatattgcactacctcctcctggatggga 866

                                                                        
Query: 665  aaggcagattagaataagaggtgaaggaggcaccaaatttgctgatgtgtactacacttc 724
            ||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 867  aagacagatcagaataagaggcgaaggaggcaccaaatttgctgatgtgtattacacttc 926

                                                                        
Query: 725  tcctactgcaaggaaactgaggtcactggttgaagttgatcggtacctccaagaaaatcc 784
            |||||||| ||||||||||||||||||||||||| ||||| ||||||||   || |||||
Sbjct: 927  tcctactggaaggaaactgaggtcactggttgaaattgataggtacctcttggagaatcc 986

                                                                        
Query: 785  agagtatggtgcacagggtgtaacattagctcaattttccttccagatccctagacctct 844
             || |||| ||||||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 987  ggattatgttgcacagggtgtaacattaactcaattttcattccagattcctaggcctct 1046

                                            
Query: 845  gcggcagaactatgtcaaaaagcgccctaaga 876
            ||| ||| ||||||||||||||||||||||||
Sbjct: 1047 gcgacaggactatgtcaaaaagcgccctaaga 1078

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>dbj|AK107282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B01, full
            insert sequence
          Length = 1312

 Score =  547 bits (276), Expect = e-152
 Identities = 408/452 (90%)
 Strand = Plus / Plus

                                                                        
Query: 425  gccatgtattggggcattcactatccagtgtgctaggtgcttcaaatggagacttattcc 484
            ||||| |||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||
Sbjct: 709  gccatctattggggcattcactgtccaatgtgccaagtgtttcaaatggagacttattcc 768

                                                                        
Query: 485  aacgaaagagaagtacgaagaaatacgtgagcatattatacaggaaccttttgactgcga 544
             || ||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||
Sbjct: 769  gacaaaagagaagtatgaagaaattcgtgagtgtattatacaggaaccttttgagtgcga 828

                                                                        
Query: 545  acgagcccgtgaatggaaacctgatgtaacatgcgatgatcaagaagatatatctcagga 604
            |||||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||
Sbjct: 829  acgagcccgtgagtggagacctgatgtaacatgtaatgatccagaagatatatctcagga 888

                                                                        
Query: 605  tggaagcagactctgggctatcgacaaacccaatattgcacagcctcctgctggatggga 664
            ||||||||| || |||||||| |||||||||||||||||||  |||||| ||||||||||
Sbjct: 889  tggaagcaggctttgggctattgacaaacccaatattgcactacctcctcctggatggga 948

                                                                        
Query: 665  aaggcagattagaataagaggtgaaggaggcaccaaatttgctgatgtgtactacacttc 724
            ||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 949  aagacagatcagaataagaggcgaaggaggcaccaaatttgctgatgtgtattacacttc 1008

                                                                        
Query: 725  tcctactgcaaggaaactgaggtcactggttgaagttgatcggtacctccaagaaaatcc 784
            |||||||| ||||||||||||||||||||||||| ||||| ||||||||   || |||||
Sbjct: 1009 tcctactggaaggaaactgaggtcactggttgaaattgataggtacctcttggagaatcc 1068

                                                                        
Query: 785  agagtatggtgcacagggtgtaacattagctcaattttccttccagatccctagacctct 844
             || |||| ||||||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 1069 ggattatgttgcacagggtgtaacattaactcaattttcattccagattcctaggcctct 1128

                                            
Query: 845  gcggcagaactatgtcaaaaagcgccctaaga 876
            ||| ||| ||||||||||||||||||||||||
Sbjct: 1129 gcgacaggactatgtcaaaaagcgccctaaga 1160

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>dbj|AK101317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D09, full
            insert sequence
          Length = 1751

 Score =  547 bits (276), Expect = e-152
 Identities = 408/452 (90%)
 Strand = Plus / Plus

                                                                        
Query: 425  gccatgtattggggcattcactatccagtgtgctaggtgcttcaaatggagacttattcc 484
            ||||| |||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||
Sbjct: 631  gccatctattggggcattcactgtccaatgtgccaagtgtttcaaatggagacttattcc 690

                                                                        
Query: 485  aacgaaagagaagtacgaagaaatacgtgagcatattatacaggaaccttttgactgcga 544
             || ||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||
Sbjct: 691  gacaaaagagaagtatgaagaaattcgtgagtgtattatacaggaaccttttgagtgcga 750

                                                                        
Query: 545  acgagcccgtgaatggaaacctgatgtaacatgcgatgatcaagaagatatatctcagga 604
            |||||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||
Sbjct: 751  acgagcccgtgagtggagacctgatgtaacatgtaatgatccagaagatatatctcagga 810

                                                                        
Query: 605  tggaagcagactctgggctatcgacaaacccaatattgcacagcctcctgctggatggga 664
            ||||||||| || |||||||| |||||||||||||||||||  |||||| ||||||||||
Sbjct: 811  tggaagcaggctttgggctattgacaaacccaatattgcactacctcctcctggatggga 870

                                                                        
Query: 665  aaggcagattagaataagaggtgaaggaggcaccaaatttgctgatgtgtactacacttc 724
            ||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 871  aagacagatcagaataagaggcgaaggaggcaccaaatttgctgatgtgtattacacttc 930

                                                                        
Query: 725  tcctactgcaaggaaactgaggtcactggttgaagttgatcggtacctccaagaaaatcc 784
            |||||||| ||||||||||||||||||||||||| ||||| ||||||||   || |||||
Sbjct: 931  tcctactggaaggaaactgaggtcactggttgaaattgataggtacctcttggagaatcc 990

                                                                        
Query: 785  agagtatggtgcacagggtgtaacattagctcaattttccttccagatccctagacctct 844
             || |||| ||||||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 991  ggattatgttgcacagggtgtaacattaactcaattttcattccagattcctaggcctct 1050

                                            
Query: 845  gcggcagaactatgtcaaaaagcgccctaaga 876
            ||| ||| ||||||||||||||||||||||||
Sbjct: 1051 gcgacaggactatgtcaaaaagcgccctaaga 1082

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>gb|AY029561.1| Zea mays putative methyl-binding domain protein MBD111 mRNA,
           complete cds
          Length = 1452

 Score =  454 bits (229), Expect = e-124
 Identities = 391/445 (87%)
 Strand = Plus / Plus

                                                                       
Query: 422 atcgccatgtattggggcattcactatccagtgtgctaggtgcttcaaatggagacttat 481
           |||||||| |||||| ||||||||| |||| |||||||  || || |||||||| |||||
Sbjct: 300 atcgccatctattggagcattcactgtccaatgtgctaaatgttttaaatggaggcttat 359

                                                                       
Query: 482 tccaacgaaagagaagtacgaagaaatacgtgagcatattatacaggaaccttttgactg 541
           |||||||||||||||||| |||||||| ||||| | ||||||| ||||||||||||  ||
Sbjct: 360 tccaacgaaagagaagtatgaagaaattcgtgaacgtattatagaggaaccttttgtatg 419

                                                                       
Query: 542 cgaacgagcccgtgaatggaaacctgatgtaacatgcgatgatcaagaagatatatctca 601
           | || |||| |||||||||| |||||||||||||||| |||| | |||||||||||||||
Sbjct: 420 caaaagagctcgtgaatggagacctgatgtaacatgcaatgacccagaagatatatctca 479

                                                                       
Query: 602 ggatggaagcagactctgggctatcgacaaacccaatattgcacagcctcctgctggatg 661
           |||||| ||||| || |||||||| |||||||||||||||||||| || |||   |||||
Sbjct: 480 ggatggtagcaggctttgggctattgacaaacccaatattgcacaaccccctcgcggatg 539

                                                                       
Query: 662 ggaaaggcagattagaataagaggtgaaggaggcaccaaatttgctgatgtgtactacac 721
           ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct: 540 ggaaaggcagattaggataagaggtgaagggggtaccaaatttgctgatgtatactatac 599

                                                                       
Query: 722 ttctcctactgcaaggaaactgaggtcactggttgaagttgatcggtacctccaagaaaa 781
            |||||||||| ||||||||| ||||| ||||||||||| ||| ||| ||||||||| ||
Sbjct: 600 ctctcctactggaaggaaacttaggtctctggttgaagtcgataggttcctccaagagaa 659

                                                                       
Query: 782 tccagagtatggtgcacagggtgtaacattagctcaattttccttccagatccctagacc 841
           ||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||
Sbjct: 660 tccggagtatggtgctcagggtgtaactttagctcagttttcgttccagatacctagacc 719

                                    
Query: 842 tctgcggcagaactatgtcaaaaag 866
           ||| |||||| ||||||| ||||||
Sbjct: 720 tctacggcaggactatgtgaaaaag 744

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>gb|AY029560.1| Zea mays putative methyl-binding domain protein MBD108 mRNA,
           complete cds
          Length = 1431

 Score =  446 bits (225), Expect = e-121
 Identities = 387/441 (87%)
 Strand = Plus / Plus

                                                                       
Query: 426 ccatgtattggggcattcactatccagtgtgctaggtgcttcaaatggagacttattcca 485
           |||| |||||| ||||||||| |||| |||||||  || || |||||||| |||||||||
Sbjct: 336 ccatctattggagcattcactgtccaatgtgctaaatgttttaaatggaggcttattcca 395

                                                                       
Query: 486 acgaaagagaagtacgaagaaatacgtgagcatattatacaggaaccttttgactgcgaa 545
           || |||||||| ||||||||||| ||||| | ||||||||||||||||||||  ||| ||
Sbjct: 396 acaaaagagaaatacgaagaaattcgtgaacgtattatacaggaaccttttgtatgcaaa 455

                                                                       
Query: 546 cgagcccgtgaatggaaacctgatgtaacatgcgatgatcaagaagatatatctcaggat 605
            |||| |||||||||| ||||||| |||||||| |||| | |||||||||||||||||| 
Sbjct: 456 agagctcgtgaatggagacctgatataacatgcaatgacccagaagatatatctcaggac 515

                                                                       
Query: 606 ggaagcagactctgggctatcgacaaacccaatattgcacagcctcctgctggatgggaa 665
           || ||||| || |||||||| |||||||||||||||||||| || |||  ||||||||||
Sbjct: 516 ggtagcaggctttgggctattgacaaacccaatattgcacaaccccctcatggatgggaa 575

                                                                       
Query: 666 aggcagattagaataagaggtgaaggaggcaccaaatttgctgatgtgtactacacttct 725
           ||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || |||
Sbjct: 576 aggcagattaggataagaggtgaagggggtaccaaatttgctgatgtatactatacctct 635

                                                                       
Query: 726 cctactgcaaggaaactgaggtcactggttgaagttgatcggtacctccaagaaaatcca 785
           ||||||| ||||||||| ||||| ||||||||||| ||| ||| ||||||||| ||||||
Sbjct: 636 cctactggaaggaaacttaggtctctggttgaagtcgataggttcctccaagagaatcca 695

                                                                       
Query: 786 gagtatggtgcacagggtgtaacattagctcaattttccttccagatccctagacctctg 845
           ||| ||| ||||||||||||||| |||||||| ||||| |||||||| ||||||||| ||
Sbjct: 696 gagcatgttgcacagggtgtaactttagctcagttttcgttccagatacctagacctttg 755

                                
Query: 846 cggcagaactatgtcaaaaag 866
           |||||| ||||||||||||||
Sbjct: 756 cggcaggactatgtcaaaaag 776

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score =  361 bits (182), Expect = 5e-96
 Identities = 263/290 (90%)
 Strand = Plus / Minus

                                                                            
Query: 425      gccatgtattggggcattcactatccagtgtgctaggtgcttcaaatggagacttattcc 484
                ||||| |||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||
Sbjct: 18863046 gccatctattggggcattcactgtccaatgtgccaagtgtttcaaatggagacttattcc 18862987

                                                                            
Query: 485      aacgaaagagaagtacgaagaaatacgtgagcatattatacaggaaccttttgactgcga 544
                 || ||||||||||| |||||||| ||||||  ||||||||||||||||||||| |||||
Sbjct: 18862986 gacaaaagagaagtatgaagaaattcgtgagtgtattatacaggaaccttttgagtgcga 18862927

                                                                            
Query: 545      acgagcccgtgaatggaaacctgatgtaacatgcgatgatcaagaagatatatctcagga 604
                |||||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||
Sbjct: 18862926 acgagcccgtgagtggagacctgatgtaacatgtaatgatccagaagatatatctcagga 18862867

                                                                            
Query: 605      tggaagcagactctgggctatcgacaaacccaatattgcacagcctcctgctggatggga 664
                ||||||||| || |||||||| |||||||||||||||||||  |||||| ||||||||||
Sbjct: 18862866 tggaagcaggctttgggctattgacaaacccaatattgcactacctcctcctggatggga 18862807

                                                                  
Query: 665      aaggcagattagaataagaggtgaaggaggcaccaaatttgctgatgtgt 714
                ||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18862806 aagacagatcagaataagaggcgaaggaggcaccaaatttgctgatgtgt 18862757



 Score =  121 bits (61), Expect = 8e-24
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                            
Query: 780      aatccagagtatggtgcacagggtgtaacattagctcaattttccttccagatccctaga 839
                ||||| || |||| ||||||||||||||||||| |||||||||| |||||||| ||||| 
Sbjct: 18861070 aatccggattatgttgcacagggtgtaacattaactcaattttcattccagattcctagg 18861011

                                                     
Query: 840      cctctgcggcagaactatgtcaaaaagcgccctaaga 876
                |||||||| ||| ||||||||||||||||||||||||
Sbjct: 18861010 cctctgcgacaggactatgtcaaaaagcgccctaaga 18860974



 Score = 83.8 bits (42), Expect = 2e-12
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                      
Query: 717      tacacttctcctactgcaaggaaactgaggtcactggttgaagttgatcggtac 770
                |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct: 18861299 tacacttctcctactggaaggaaactgaggtcactggttgaaattgataggtac 18861246

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>gb|AY108523.1| Zea mays PCO097059 mRNA sequence
          Length = 873

 Score =  125 bits (63), Expect = 5e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                       
Query: 752 ggttgaagttgatcggtacctccaagaaaatccagagtatggtgcacagggtgtaacatt 811
           ||||||||| ||| ||| ||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct: 11  ggttgaagtcgataggttcctccaagagaatccggagtatggtgctcagggtgtaacttt 70

                                                                  
Query: 812 agctcaattttccttccagatccctagacctctgcggcagaactatgtcaaaaag 866
           |||||| ||||| |||||||| ||||||||||| |||||| ||||||| ||||||
Sbjct: 71  agctcagttttcgttccagatacctagacctctacggcaggactatgtgaaaaag 125

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>gb|AY111995.1| Zea mays CL7274_1 mRNA sequence
          Length = 766

 Score =  117 bits (59), Expect = 1e-22
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                       
Query: 770 cctccaagaaaatccagagtatggtgcacagggtgtaacattagctcaattttccttcca 829
           ||||||||| ||||||||| ||| ||||||||||||||| |||||||| ||||| |||||
Sbjct: 9   cctccaagagaatccagagcatgttgcacagggtgtaactttagctcagttttcgttcca 68

                                          
Query: 830 gatccctagacctctgcggcagaactatgtc 860
           ||| |||||||||||||||||| ||||||||
Sbjct: 69  gatacctagacctctgcggcaggactatgtc 99

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>ref|NM_001065023.1| Oryza sativa (japonica cultivar-group) Os06g0702100 (Os06g0702100)
           mRNA, complete cds
          Length = 1134

 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 233/301 (77%)
 Strand = Plus / Plus

                                                                       
Query: 462 tgcttcaaatggagacttattccaacgaaagagaagtacgaagaaatacgtgagcatatt 521
           ||||||||||||||  | || ||||| |||||||| || ||||| ||||||||| |||||
Sbjct: 400 tgcttcaaatggaggatcatcccaacaaaagagaaatatgaagagatacgtgagaatatt 459

                                                                       
Query: 522 atacaggaaccttttgactgcgaacgagcccgtgaatggaaacctgatgtaacatgcgat 581
              |||||    ||||  || ||| |||| ||||||||||| | || | || | |||| |
Sbjct: 460 tgtcaggatgtgtttgtatgtgaaagagctcgtgaatggaaccgtgttatatcttgcgtt 519

                                                                       
Query: 582 gatcaagaagatatatctcaggatggaagcagactctgggctatcgacaaacccaatatt 641
           ||||  ||||||||||| ||||||||||| ||  | ||||| || |||||  | |  |||
Sbjct: 520 gatcctgaagatatatcacaggatggaagtagggtgtgggcgattgacaaggcaagcatt 579

                                                                       
Query: 642 gcacagcctcctgctggatgggaaaggcagattagaataagaggtgaaggaggcaccaaa 701
            | ||| ||||| |||| ||||| ||  || | ||||| ||||| || ||  ||| ||| 
Sbjct: 580 tcccagactcctcctggctgggatagagaggtcagaatcagaggagagggttgcagcaag 639

                                                                       
Query: 702 tttgctgatgtgtactacacttctcctactgcaaggaaactgaggtcactggttgaagtt 761
           ||||| |||||||||||||||||||| ||||  | |||  |||||||| |||| ||||||
Sbjct: 640 tttgcagatgtgtactacacttctccaactgggaagaagttgaggtcattggtagaagtt 699

            
Query: 762 g 762
           |
Sbjct: 700 g 700

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>emb|CT989192.1| Eucalyptus globulus EST from juvenile versus mature wood and mature
           versus juvenile wood SSH libraries
          Length = 331

 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 448 tccagtgtgctaggtgcttcaaatggagacttattccaacgaaagagaagtacgaagaaa 507
           ||||||||||||  ||||| |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 127 tccagtgtgctaactgctttaaatggaggcttatacccactaaagagaagtatgaagaaa 186

            
Query: 508 t 508
           |
Sbjct: 187 t 187

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>emb|CT989123.1| Eucalyptus globulus EST from juvenile versus mature wood and mature
           versus juvenile wood SSH libraries
          Length = 439

 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 448 tccagtgtgctaggtgcttcaaatggagacttattccaacgaaagagaagtacgaagaaa 507
           ||||||||||||  ||||| |||||||| ||||| || || ||||||||||| |||||||
Sbjct: 313 tccagtgtgctaactgctttaaatggaggcttatacccactaaagagaagtatgaagaaa 254

            
Query: 508 t 508
           |
Sbjct: 253 t 253



 Score = 48.1 bits (24), Expect = 0.096
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 676 gaataagaggtgaaggaggcaccaaatttgctgatgtgta 715
           |||| |||||||||||| ||||||| ||||| ||||||||
Sbjct: 85  gaatcagaggtgaaggaagcaccaagtttgcagatgtgta 46

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>dbj|AB025636.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVP2
          Length = 80402

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 681  agaggtgaaggaggcaccaaatttgctgatgtgta 715
            |||||||||||||| |||| |||||||||||||||
Sbjct: 5138 agaggtgaaggaggtaccagatttgctgatgtgta 5104

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>gb|AF058826.1|AF058826 Arabidopsis thaliana BAC T26D22
          Length = 113567

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 681   agaggtgaaggaggcaccaaatttgctgatgtgta 715
             |||||||||||||| |||| |||||||||||||||
Sbjct: 16994 agaggtgaaggaggtaccagatttgctgatgtgta 16960

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 118/149 (79%)
 Strand = Plus / Plus

                                                                            
Query: 462      tgcttcaaatggagacttattccaacgaaagagaagtacgaagaaatacgtgagcatatt 521
                ||||||||||||||  | || ||||| |||||||| || ||||| ||||||||| |||||
Sbjct: 29077870 tgcttcaaatggaggatcatcccaacaaaagagaaatatgaagagatacgtgagaatatt 29077929

                                                                            
Query: 522      atacaggaaccttttgactgcgaacgagcccgtgaatggaaacctgatgtaacatgcgat 581
                   |||||    ||||  || ||| |||| ||||||||||| | || | || | |||| |
Sbjct: 29077930 tgtcaggatgtgtttgtatgtgaaagagctcgtgaatggaaccgtgttatatcttgcgtt 29077989

                                             
Query: 582      gatcaagaagatatatctcaggatggaag 610
                ||||  ||||||||||| |||||||||||
Sbjct: 29077990 gatcctgaagatatatcacaggatggaag 29078018

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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 118/149 (79%)
 Strand = Plus / Plus

                                                                         
Query: 462   tgcttcaaatggagacttattccaacgaaagagaagtacgaagaaatacgtgagcatatt 521
             ||||||||||||||  | || ||||| |||||||| || ||||| ||||||||| |||||
Sbjct: 92857 tgcttcaaatggaggatcatcccaacaaaagagaaatatgaagagatacgtgagaatatt 92916

                                                                         
Query: 522   atacaggaaccttttgactgcgaacgagcccgtgaatggaaacctgatgtaacatgcgat 581
                |||||    ||||  || ||| |||| ||||||||||| | || | || | |||| |
Sbjct: 92917 tgtcaggatgtgtttgtatgtgaaagagctcgtgaatggaaccgtgttatatcttgcgtt 92976

                                          
Query: 582   gatcaagaagatatatctcaggatggaag 610
             ||||  ||||||||||| |||||||||||
Sbjct: 92977 gatcctgaagatatatcacaggatggaag 93005

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>dbj|AK228378.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL14-84-M19
          Length = 901

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 560 agaggtgaaggaggtaccagatttgctgatgt 591

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>gb|BT025800.1| Arabidopsis thaliana At5g35330 mRNA, complete cds
          Length = 819

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 415 agaggtgaaggaggtaccagatttgctgatgt 446

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>ref|NM_203121.1| Arabidopsis thaliana MBD02; DNA binding (MBD02) mRNA, complete cds
          Length = 1213

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 564 agaggtgaaggaggtaccagatttgctgatgt 595

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>ref|NM_122924.1| Arabidopsis thaliana MBD02; DNA binding (MBD02) mRNA, complete cds
          Length = 1222

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 570 agaggtgaaggaggtaccagatttgctgatgt 601

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>gb|AY088026.1| Arabidopsis thaliana clone 40501 mRNA, complete sequence
          Length = 1222

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 570 agaggtgaaggaggtaccagatttgctgatgt 601

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>gb|BT005718.1| Arabidopsis thaliana clone RAFL14-84-M19 (R20358) unknown protein
           (At5g35330) mRNA, partial cds
          Length = 916

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 560 agaggtgaaggaggtaccagatttgctgatgt 591

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>emb|BX830346.1|CNS0A1K9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB74ZG02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1121

 Score = 48.1 bits (24), Expect = 0.096
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 681 agaggtgaaggaggcaccaaatttgctgatgt 712
           |||||||||||||| |||| ||||||||||||
Sbjct: 564 agaggtgaaggaggtaccagatttgctgatgt 595

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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 46.1 bits (23), Expect = 0.38
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 1465    ctgttgtgttgtgctgtatgtcg 1487
               |||||||||||||||||||||||
Sbjct: 2034043 ctgttgtgttgtgctgtatgtcg 2034021

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>gb|AC144578.2| Homo sapiens chromosome 8, clone XXfos-802716D4, complete sequence
          Length = 38207

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 738  aaactgaggtcactggttgaag 759
            ||||||||||||||||||||||
Sbjct: 7980 aaactgaggtcactggttgaag 7959

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>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete
              sequence
          Length = 175726

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1420   ccttttattttctcctttgtaa 1441
              ||||||||||||||||||||||
Sbjct: 116746 ccttttattttctcctttgtaa 116725

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>gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, complete sequence
          Length = 72016

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 738  aaactgaggtcactggttgaag 759
            ||||||||||||||||||||||
Sbjct: 7276 aaactgaggtcactggttgaag 7255

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>dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-361G14, complete
              sequence
          Length = 189176

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1420   ccttttattttctcctttgtaa 1441
              ||||||||||||||||||||||
Sbjct: 145388 ccttttattttctcctttgtaa 145367

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>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
             sequence
          Length = 165755

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1420  ccttttattttctcctttgtaa 1441
             ||||||||||||||||||||||
Sbjct: 18814 ccttttattttctcctttgtaa 18793

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>dbj|AB020872.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 4/10
          Length = 100000

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1420  ccttttattttctcctttgtaa 1441
             ||||||||||||||||||||||
Sbjct: 66513 ccttttattttctcctttgtaa 66492

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>ref|NW_001091934.1| Theileria annulata strain Ankara clone C6
          Length = 1898942

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1280   tgaggtcgacaaaaaatccga 1300
              |||||||||||||||||||||
Sbjct: 273326 tgaggtcgacaaaaaatccga 273346

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>ref|XM_001096271.1| PREDICTED: Macaca mulatta similar to prophet of Pit1, paired-like
            homeodomain transcription factor (LOC707843), mRNA
          Length = 2095

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1027 aagcagaaggctctgagccag 1047
            |||||||||||||||||||||
Sbjct: 1232 aagcagaaggctctgagccag 1252

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>gb|AC159994.7| Mus musculus chromosome 7, clone RP23-368F23, complete sequence
          Length = 181238

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1136  aaaagctgcagtctgacgtacccag 1160
             |||||||||||||||||| ||||||
Sbjct: 66167 aaaagctgcagtctgacgcacccag 66143

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>gb|AC154508.2| Mus musculus BAC clone RP24-96P6 from chromosome 16, complete sequence
          Length = 214625

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    ttgaagtcagaaacagtagat 347
              |||||||||||||||||||||
Sbjct: 152088 ttgaagtcagaaacagtagat 152068

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>gb|BC034347.1| Mus musculus RIKEN cDNA C530044N13 gene, mRNA (cDNA clone MGC:27760
           IMAGE:2654874), complete cds
          Length = 2343

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 327 ttgaagtcagaaacagtagat 347
           |||||||||||||||||||||
Sbjct: 965 ttgaagtcagaaacagtagat 945

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>gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, complete sequence
          Length = 181948

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1136  aaaagctgcagtctgacgtacccag 1160
             |||||||||||||||||| ||||||
Sbjct: 59485 aaaagctgcagtctgacgcacccag 59461

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>gb|AC154509.2| Mus musculus BAC clone RP23-207P21 from chromosome 16, complete sequence
          Length = 203692

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    ttgaagtcagaaacagtagat 347
              |||||||||||||||||||||
Sbjct: 126541 ttgaagtcagaaacagtagat 126561

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>dbj|AK133977.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730589C11 product:hypothetical
            Metallophosphoesterase containing protein, full insert
            sequence
          Length = 2697

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  ttgaagtcagaaacagtagat 347
            |||||||||||||||||||||
Sbjct: 1317 ttgaagtcagaaacagtagat 1297

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>dbj|AK029379.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4833416G05 product:hypothetical
            Metallo-dependent phosphatases structure containing
            protein, full insert sequence
          Length = 2575

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  ttgaagtcagaaacagtagat 347
            |||||||||||||||||||||
Sbjct: 1248 ttgaagtcagaaacagtagat 1228

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>dbj|AK080876.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430114C18 product:hypothetical
            Serine/threonine specific protein phosphatase containing
            protein, full insert sequence
          Length = 2615

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  ttgaagtcagaaacagtagat 347
            |||||||||||||||||||||
Sbjct: 1281 ttgaagtcagaaacagtagat 1261

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>dbj|AK032288.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430515N22 product:similar to
            CDNA FLJ11151 FIS, CLONE PLACE1006883 [Homo sapiens],
            full insert sequence
          Length = 2613

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  ttgaagtcagaaacagtagat 347
            |||||||||||||||||||||
Sbjct: 1286 ttgaagtcagaaacagtagat 1266

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>ref|NM_146067.2| Mus musculus RIKEN cDNA C530044N13 gene (C530044N13Rik), mRNA
 dbj|AK049721.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530044N13 product:similar to
            CDNA FLJ11151 FIS, CLONE PLACE1006883 [Homo sapiens],
            full insert sequence
          Length = 2664

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  ttgaagtcagaaacagtagat 347
            |||||||||||||||||||||
Sbjct: 1324 ttgaagtcagaaacagtagat 1304

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>gb|BC025476.1| Mus musculus RIKEN cDNA C530044N13 gene, mRNA (cDNA clone
            IMAGE:5352934), partial cds
          Length = 2638

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  ttgaagtcagaaacagtagat 347
            |||||||||||||||||||||
Sbjct: 1244 ttgaagtcagaaacagtagat 1224

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>gb|AC087318.33| Homo sapiens 12 BAC RP11-73M14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104647

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 775   aagaaaatccagagtatggtg 795
             |||||||||||||||||||||
Sbjct: 78236 aagaaaatccagagtatggtg 78216

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>ref|XM_949746.1| Theileria annulata strain Ankara hypothetical protein (TA05330)
            partial mRNA
          Length = 1578

 Score = 42.1 bits (21), Expect = 5.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1280 tgaggtcgacaaaaaatccga 1300
            |||||||||||||||||||||
Sbjct: 243  tgaggtcgacaaaaaatccga 263


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 257,818,082
Number of extensions: 13086202
Number of successful extensions: 242579
Number of sequences better than 10.0: 44
Number of HSP's gapped: 242579
Number of HSP's successfully gapped: 48
Length of query: 1548
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1525
Effective length of database: 18,503,978,556
Effective search space: 28218567297900
Effective search space used: 28218567297900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result