ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62e20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001065292.1| Oryza sativa (japonica cultivar-group) Os07g0115500 (Os07g0115500) mRNA, complete cds Length = 681 Score = 111 bits (56), Expect = 4e-21 Identities = 131/156 (83%) Strand = Plus / Plus Query: 210 gccgcgcggccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctcc 269 |||| ||||| |||||||| ||||| || |||||||||||| || ||||||||||||| Sbjct: 101 gccgggcggcggtgccggtgaagcgtgtctggctcggcctctccgcccgcctcggcctcc 160 Query: 270 gtcgatccaccggtcttggagagctgcgcagggaggtccgaacgtgcgagtacgacgacg 329 | ||| ||||||| || || ||||||| | ||||| || |||||||||||| ||||| Sbjct: 161 ggcgaaccaccggcctggggaagctgcggaatgaggtgcggacgtgcgagtacagcgacg 220 Query: 330 tgcacgtcatgtgggagctgctcagcggcatggacg 365 ||||||||||||||||| |||||||| |||||||| Sbjct: 221 tgcacgtcatgtgggagatgctcagctccatggacg 256 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Plus Query: 477 ccgccgcgtggagccgcctcttctcctcctgctgc 511 ||||||||||||||||||| |||||| ||||||| Sbjct: 323 ccgccgcgtggagccgccttgtctcctgctgctgc 357
>dbj|AK108206.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D05, full insert sequence Length = 678 Score = 111 bits (56), Expect = 4e-21 Identities = 131/156 (83%) Strand = Plus / Plus Query: 210 gccgcgcggccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctcc 269 |||| ||||| |||||||| ||||| || |||||||||||| || ||||||||||||| Sbjct: 101 gccgggcggcggtgccggtgaagcgtgtctggctcggcctctccgcccgcctcggcctcc 160 Query: 270 gtcgatccaccggtcttggagagctgcgcagggaggtccgaacgtgcgagtacgacgacg 329 | ||| ||||||| || || ||||||| | ||||| || |||||||||||| ||||| Sbjct: 161 ggcgaaccaccggcctggggaagctgcggaatgaggtgcggacgtgcgagtacagcgacg 220 Query: 330 tgcacgtcatgtgggagctgctcagcggcatggacg 365 ||||||||||||||||| |||||||| |||||||| Sbjct: 221 tgcacgtcatgtgggagatgctcagctccatggacg 256 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Plus Query: 477 ccgccgcgtggagccgcctcttctcctcctgctgc 511 ||||||||||||||||||| |||||| ||||||| Sbjct: 320 ccgccgcgtggagccgccttgtctcctgctgctgc 354
>ref|NM_001057896.1| Oryza sativa (japonica cultivar-group) Os03g0762500 (Os03g0762500) mRNA, complete cds Length = 832 Score = 83.8 bits (42), Expect = 9e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 218 gccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctccgtcgatcc 277 ||||||||||| ||| |||| |||||||||||| || ||||||||||||||| ||| || Sbjct: 143 gccgtgccggtgaagagggtgtggctcggcctcgccgcgcgcctcggcctccggcgaacc 202 Query: 278 accggtcttggagagctgcgcagggaggtccgaacgtgcgagtacgacgacgtgcacgtc 337 | ||| || || ||||| | |||||| | |||||||||||| ||||||||||| || Sbjct: 203 agcgggctggggaagctgaagaaggaggtgaggacgtgcgagtaccacgacgtgcacatc 262 Query: 338 atgtgggagctgct 351 ||||||||| |||| Sbjct: 263 atgtgggagatgct 276
>dbj|AK103002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116G06, full insert sequence Length = 834 Score = 83.8 bits (42), Expect = 9e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 218 gccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctccgtcgatcc 277 ||||||||||| ||| |||| |||||||||||| || ||||||||||||||| ||| || Sbjct: 145 gccgtgccggtgaagagggtgtggctcggcctcgccgcgcgcctcggcctccggcgaacc 204 Query: 278 accggtcttggagagctgcgcagggaggtccgaacgtgcgagtacgacgacgtgcacgtc 337 | ||| || || ||||| | |||||| | |||||||||||| ||||||||||| || Sbjct: 205 agcgggctggggaagctgaagaaggaggtgaggacgtgcgagtaccacgacgtgcacatc 264 Query: 338 atgtgggagctgct 351 ||||||||| |||| Sbjct: 265 atgtgggagatgct 278
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 302 gaggtccgaacgtgcgagtacgacgacgtgcacgtcatgtgggagctgctcagcggcatg 361 ||||| || |||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct: 848273 gaggtgcggacgtgcgagtacagcgacgtgcacgtcatgtgggagatgctcagctccatg 848332 Query: 362 gacg 365 |||| Sbjct: 848333 gacg 848336 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 210 gccgcgcggccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctcc 269 |||| ||||| |||||||| ||||| || |||||||||||| || ||||||||||||| Sbjct: 848066 gccgggcggcggtgccggtgaagcgtgtctggctcggcctctccgcccgcctcggcctcc 848125 Query: 270 gtcgatccaccggt 283 | ||| |||||||| Sbjct: 848126 ggcgaaccaccggt 848139 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Plus Query: 477 ccgccgcgtggagccgcctcttctcctcctgctgc 511 ||||||||||||||||||| |||||| ||||||| Sbjct: 848403 ccgccgcgtggagccgccttgtctcctgctgctgc 848437 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 cagcactgcaatcttcacact 142 ||||||||||||||||||||| Sbjct: 15316767 cagcactgcaatcttcacact 15316747 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 gaggaggcggacgaggagggc 465 ||||||||||||||||||||| Sbjct: 27651144 gaggaggcggacgaggagggc 27651164
>dbj|AP005486.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1138_B05 Length = 113982 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 302 gaggtccgaacgtgcgagtacgacgacgtgcacgtcatgtgggagctgctcagcggcatg 361 ||||| || |||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct: 47029 gaggtgcggacgtgcgagtacagcgacgtgcacgtcatgtgggagatgctcagctccatg 47088 Query: 362 gacg 365 |||| Sbjct: 47089 gacg 47092 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 210 gccgcgcggccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctcc 269 |||| ||||| |||||||| ||||| || |||||||||||| || ||||||||||||| Sbjct: 46822 gccgggcggcggtgccggtgaagcgtgtctggctcggcctctccgcccgcctcggcctcc 46881 Query: 270 gtcgatccaccggt 283 | ||| |||||||| Sbjct: 46882 ggcgaaccaccggt 46895 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Plus Query: 477 ccgccgcgtggagccgcctcttctcctcctgctgc 511 ||||||||||||||||||| |||||| ||||||| Sbjct: 47159 ccgccgcgtggagccgccttgtctcctgctgctgc 47193
>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence Length = 146022 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 218 gccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctccgtcgatcc 277 ||||||||||| ||| |||| |||||||||||| || ||||||||||||||| ||| || Sbjct: 41316 gccgtgccggtgaagagggtgtggctcggcctcgccgcgcgcctcggcctccggcgaacc 41375 Query: 278 accggt 283 | |||| Sbjct: 41376 agcggt 41381 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||| ||||||||||| ||||||||||| |||| Sbjct: 41484 acgtgcgagtaccacgacgtgcacatcatgtgggagatgct 41524
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 218 gccgtgccggtaaagcgggtttggctcggcctccgcgggcgcctcggcctccgtcgatcc 277 ||||||||||| ||| |||| |||||||||||| || ||||||||||||||| ||| || Sbjct: 31324591 gccgtgccggtgaagagggtgtggctcggcctcgccgcgcgcctcggcctccggcgaacc 31324650 Query: 278 accggt 283 | |||| Sbjct: 31324651 agcggt 31324656 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||| ||||||||||| ||||||||||| |||| Sbjct: 31324759 acgtgcgagtaccacgacgtgcacatcatgtgggagatgct 31324799 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Minus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 5549919 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 5549879
>gb|DQ245921.1| Zea mays clone 22675 mRNA sequence Length = 731 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||||||| ||||||||| |||| Sbjct: 268 acgtgcgagtacgaggacgtgcacgtgatgtgggagatgct 308
>emb|CT829765.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016I18, full insert sequence Length = 559 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 188 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 228
>ref|NM_001055854.1| Oryza sativa (japonica cultivar-group) Os03g0206400 (Os03g0206400) mRNA, complete cds Length = 550 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 186 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 226
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence Length = 153126 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Minus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 94236 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 94196
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06, complete sequence Length = 168031 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Minus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 14403 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 14363
>dbj|AK107011.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F03, full insert sequence Length = 656 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 291 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 331
>dbj|AK066494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072H16, full insert sequence Length = 552 Score = 50.1 bits (25), Expect = 0.013 Identities = 37/41 (90%) Strand = Plus / Plus Query: 311 acgtgcgagtacgacgacgtgcacgtcatgtgggagctgct 351 |||||||||||||| ||||||| ||| ||||||||| |||| Sbjct: 188 acgtgcgagtacgaggacgtgcgcgtgatgtgggagatgct 228
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 235 ggtttggctcggcctccgcgggcgcct 261 |||||||||| |||||||||||||||| Sbjct: 11006045 ggtttggctccgcctccgcgggcgcct 11006019
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 235 ggtttggctcggcctccgcgggcgcct 261 |||||||||| |||||||||||||||| Sbjct: 34927 ggtttggctccgcctccgcgggcgcct 34901
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 235 ggtttggctcggcctccgcgggcgcct 261 |||||||||| |||||||||||||||| Sbjct: 108887 ggtttggctccgcctccgcgggcgcct 108861
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 713 cgtatgtgttcggagttgtaaat 735 ||||||||||||||||||||||| Sbjct: 3651220 cgtatgtgttcggagttgtaaat 3651242
>dbj|AK233977.1| Sus scrofa mRNA, clone:MLN010084D11, expressed in mesenteric lymph node Length = 1548 Score = 44.1 bits (22), Expect = 0.78 Identities = 22/22 (100%) Strand = Plus / Plus Query: 444 ggaggaggcggacgaggagggc 465 |||||||||||||||||||||| Sbjct: 173 ggaggaggcggacgaggagggc 194
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.78 Identities = 25/26 (96%) Strand = Plus / Minus Query: 334 cgtcatgtgggagctgctcagcggca 359 |||||||||||||||||||| ||||| Sbjct: 635982 cgtcatgtgggagctgctcaccggca 635957
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 44.1 bits (22), Expect = 0.78 Identities = 22/22 (100%) Strand = Plus / Minus Query: 713 cgtatgtgttcggagttgtaaa 734 |||||||||||||||||||||| Sbjct: 571457 cgtatgtgttcggagttgtaaa 571436
>gb|AY834508.1| Cynopterus brachyotis brain-derived neurotrophic factor (BDNF) gene, partial cds Length = 558 Score = 44.1 bits (22), Expect = 0.78 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 tggagccgcctcttctcctcctgctg 510 ||||||||||||||||| |||||||| Sbjct: 272 tggagccgcctcttctcttcctgctg 297
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 746 ctgcatccatcttgatgtagt 766 ||||||||||||||||||||| Sbjct: 915258 ctgcatccatcttgatgtagt 915278
>dbj|AK240793.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065001J02, full insert sequence Length = 1290 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 gaggaggcggacgaggagggc 465 ||||||||||||||||||||| Sbjct: 315 gaggaggcggacgaggagggc 295
>ref|NM_001067052.1| Oryza sativa (japonica cultivar-group) Os07g0658100 (Os07g0658100) mRNA, complete cds Length = 1182 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 gaggaggcggacgaggagggc 465 ||||||||||||||||||||| Sbjct: 468 gaggaggcggacgaggagggc 448
>ref|XM_001214419.1| Aspergillus terreus NIH2624 positive regulator of purine utilization (ATEG_05241) mRNA, complete cds Length = 3195 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 cgggtttggctcggcctccgcgggc 257 ||||||||| ||||||||||||||| Sbjct: 2567 cgggtttgggtcggcctccgcgggc 2543
>tpg|BK001744.1| TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 agggggaggaggcggacgagg 460 ||||||||||||||||||||| Sbjct: 77479 agggggaggaggcggacgagg 77499
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 746 ctgcatccatcttgatgtagt 766 ||||||||||||||||||||| Sbjct: 367297 ctgcatccatcttgatgtagt 367317
>gb|AC095247.5| Rattus norvegicus 4 BAC CH230-10C6 (Children's Hospital Oakland Research Institute) complete sequence Length = 238466 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 agggggaggaggcggacgaggaggg 464 |||||||||||||||| |||||||| Sbjct: 71083 agggggaggaggcggaggaggaggg 71107
>gb|AC087066.3| Rattus norvegicus strain Brown Norway clone RP31-194D8, complete sequence Length = 166751 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 agggggaggaggcggacgaggaggg 464 |||||||||||||||| |||||||| Sbjct: 66649 agggggaggaggcggaggaggaggg 66673
>ref|XM_808394.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511423.160) partial mRNA Length = 702 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 agggggaggaggcggacgagg 460 ||||||||||||||||||||| Sbjct: 644 agggggaggaggcggacgagg 664
>gb|AC093790.3| Homo sapiens BAC clone RP11-250F14 from 4, complete sequence Length = 152359 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 436 gctaagggggaggaggcggacgaggaggg 464 |||||||| ||||||||||| |||||||| Sbjct: 57947 gctaagggagaggaggcggaggaggaggg 57919
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 cgttgccgccaccgccgccat 411 ||||||||||||||||||||| Sbjct: 5757536 cgttgccgccaccgccgccat 5757556
>emb|AL078646.29|HSJ709L21 Human DNA sequence from clone RP4-709L21 on chromosome 1q42.13-43 Contains part of the GALNT2 gene for UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2), complete sequence Length = 129413 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 agggggaggaggcggacgaggaggg 464 |||||||||||| |||||||||||| Sbjct: 71636 agggggaggaggaggacgaggaggg 71612
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 ttgccgccaccgccgccatgg 413 ||||||||||||||||||||| Sbjct: 4541857 ttgccgccaccgccgccatgg 4541837
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 392 gttgccgccaccgccgccatggttg 416 |||||||||||||||||| |||||| Sbjct: 2867028 gttgccgccaccgccgccctggttg 2867004
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 gaggaggcggacgaggagggc 465 ||||||||||||||||||||| Sbjct: 30246 gaggaggcggacgaggagggc 30266
>gb|AY011484.1| Rousettus lanosus brain-derived neurotrophic factor (BDNF) gene, partial cds Length = 558 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tggagccgcctcttctcctcctgct 509 ||||||||||||||||| ||||||| Sbjct: 272 tggagccgcctcttctcttcctgct 296
>gb|AY011483.1| Pteropus giganteus brain-derived neurotrophic factor (BDNF) gene, partial cds Length = 558 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tggagccgcctcttctcctcctgct 509 ||||||||||||||||| ||||||| Sbjct: 272 tggagccgcctcttctcttcctgct 296
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 gaggaggcggacgaggagggc 465 ||||||||||||||||||||| Sbjct: 108137 gaggaggcggacgaggagggc 108157
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 cagcactgcaatcttcacact 142 ||||||||||||||||||||| Sbjct: 23766 cagcactgcaatcttcacact 23746
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 cagcactgcaatcttcacact 142 ||||||||||||||||||||| Sbjct: 102780 cagcactgcaatcttcacact 102760
>dbj|AP005416.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23 Length = 149341 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 cgttgccgccaccgccgccat 411 ||||||||||||||||||||| Sbjct: 112161 cgttgccgccaccgccgccat 112181
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 cgttgccgccaccgccgccat 411 ||||||||||||||||||||| Sbjct: 11681 cgttgccgccaccgccgccat 11701
>gb|AY834509.1| Nyctimene albiventer brain-derived neurotrophic factor (BDNF) gene, partial cds Length = 558 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 485 tggagccgcctcttctcctcctgct 509 ||||||||||||||||| ||||||| Sbjct: 272 tggagccgcctcttctcttcctgct 296
>emb|AL833793.10| Mouse DNA sequence from clone RP23-366F22 on chromosome 2, complete sequence Length = 124256 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 agggggaggaggcggacgaggaggg 464 |||||||||||| |||||||||||| Sbjct: 82765 agggggaggaggaggacgaggaggg 82741
>gb|M94870.1|SH1ULPK Suid herpesvirus 1 serine/threonine kinase gene, complete cds Length = 2202 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 agggggaggaggcggacgagg 460 ||||||||||||||||||||| Sbjct: 556 agggggaggaggcggacgagg 576
>dbj|AB070946.1| Streptomyces avermitilis polyketide-8 biosynthetic gene cluster Length = 24790 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 ttgccgccaccgccgccatgg 413 ||||||||||||||||||||| Sbjct: 2809 ttgccgccaccgccgccatgg 2829 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 126,427,400 Number of extensions: 7264394 Number of successful extensions: 170806 Number of sequences better than 10.0: 49 Number of HSP's gapped: 170806 Number of HSP's successfully gapped: 62 Length of query: 817 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 795 Effective length of database: 18,508,616,841 Effective search space: 14714350388595 Effective search space used: 14714350388595 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
