ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf70j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9UTR7:MCP3_SCHPO Meiotic coiled-coil protein 3 - Schizosaccharo... 35 0.20
2Q87WV5:HISX_PSESM Histidinol dehydrogenase - Pseudomonas syringa... 34 0.59
3Q48EC9:HISX_PSE14 Histidinol dehydrogenase - Pseudomonas syringa... 34 0.59
4Q4ZNV9:HISX_PSEU2 Histidinol dehydrogenase - Pseudomonas syringa... 33 0.76
5Q4KI73:HISX_PSEF5 Histidinol dehydrogenase - Pseudomonas fluores... 33 0.76
6P59400:HISX_PSEPK Histidinol dehydrogenase - Pseudomonas putida ... 33 1.00
7Q08831:VTS1_YEAST Protein VTS1 - Saccharomyces cerevisiae (Baker... 32 2.2
8Q3KHZ2:HISX_PSEPF Histidinol dehydrogenase - Pseudomonas fluores... 32 2.9
9Q9HVW9:HISX_PSEAE Histidinol dehydrogenase - Pseudomonas aeruginosa 31 3.8

>Q9UTR7:MCP3_SCHPO Meiotic coiled-coil protein 3 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 952
 Score = 35.4 bits (80), Expect = 0.20
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
 Frame = +1

Query: 1   NGVHDQIVETRTLQAGRIPGDTVLKILMQKVQSLDVSFSVL---ERYLEELNSRYGQIFK 171
           N +++   + R L+         +K L+++ QSL  +   +   E+ L E+N+ Y    K
Sbjct: 315 NSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMK 374

Query: 172 DFDSDIDNKDAXXXXXXXXXXXXQ---SSKNDFARDIESILSWKSVASSQLDQLV----- 327
           +    ++NK+A            +   S  ++  R+   +L ++S  S Q D L      
Sbjct: 375 EARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDLLYQEQIQ 434

Query: 328 -----LDNVILRSEY--ERFRDKQVDLENRSFVVIFLCFIFGCLAIAKLS 456
                ++NV  ++EY  E   + + +LE  S  V+ L     CL   +LS
Sbjct: 435 SSIKDMENVFRKNEYLMEELNELKNNLEVESSKVLRLDEEMKCLKDEQLS 484



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>Q87WV5:HISX_PSESM Histidinol dehydrogenase - Pseudomonas syringae pv. tomato|
          Length = 448

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLDNVILRSEYERFRDKQVDLENR 396
           DFAR ++ +LSW+SV+   ++Q VLD  I+++  ER     V+L  +
Sbjct: 16  DFARHLDHLLSWESVSDDSVNQRVLD--IIKAVRERGDAALVELTQK 60



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>Q48EC9:HISX_PSE14 Histidinol dehydrogenase - Pseudomonas syringae pv. phaseolicola|
           (strain 1448A / Race 6)
          Length = 448

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLDNVILRSEYERFRDKQVDLENR 396
           DFAR ++ +LSW+SV+   ++Q VLD  I+++  ER  +  V+   +
Sbjct: 16  DFARHLDHLLSWESVSDDSVNQRVLD--IIKAVRERGDEALVEFTQK 60



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>Q4ZNV9:HISX_PSEU2 Histidinol dehydrogenase - Pseudomonas syringae pv. syringae|
           (strain B728a)
          Length = 448

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 16/36 (44%), Positives = 26/36 (72%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLDNVILRSEYER 363
           DFAR ++ +LSW+SV+   ++Q VLD  I+++  ER
Sbjct: 16  DFARHLDHLLSWESVSDDSVNQRVLD--IIKAVRER 49



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>Q4KI73:HISX_PSEF5 Histidinol dehydrogenase - Pseudomonas fluorescens (strain Pf-5 /|
           ATCC BAA-477)
          Length = 442

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 16/36 (44%), Positives = 26/36 (72%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLDNVILRSEYER 363
           DFAR ++ +LSW+SV+   ++Q VLD  I+++  ER
Sbjct: 16  DFARHLDHLLSWESVSDDSVNQRVLD--IIKAVRER 49



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>P59400:HISX_PSEPK Histidinol dehydrogenase - Pseudomonas putida (strain KT2440)|
          Length = 441

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 16/36 (44%), Positives = 26/36 (72%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLDNVILRSEYER 363
           DFAR ++ +LSW+SV+   ++Q VLD  I+++  ER
Sbjct: 16  DFARHLDHLLSWESVSDDAVNQRVLD--IIKAVRER 49



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>Q08831:VTS1_YEAST Protein VTS1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 523

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
 Frame = +1

Query: 241 QSSKND------FARDIESILSWKSVASSQLDQLVLDNV--ILRSEYERFRDKQVD-LEN 393
           QS KND      F++DI  + SW S+ +S     V+DN+  IL  +  ++   +++ L N
Sbjct: 176 QSQKNDPNMGTNFSQDINQLCSWISMLNSSQQNTVMDNILSILNDDVLKYTKLKIETLTN 235

Query: 394 RSFV 405
             F+
Sbjct: 236 TPFI 239



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>Q3KHZ2:HISX_PSEPF Histidinol dehydrogenase - Pseudomonas fluorescens (strain PfO-1)|
          Length = 441

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLDNVILRSEYER 363
           DFA  ++ +LSW+SV+   ++Q VLD  I+++  ER
Sbjct: 16  DFAHHLDHLLSWESVSDDSVNQRVLD--IIKAVRER 49



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>Q9HVW9:HISX_PSEAE Histidinol dehydrogenase - Pseudomonas aeruginosa|
          Length = 440

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 DFARDIESILSWKSVASSQLDQLVLD 333
           DF R ++ +LSW+SV+   ++Q VLD
Sbjct: 16  DFGRHLDHLLSWESVSDDSVNQRVLD 41


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 108,307,723
Number of extensions: 2148491
Number of successful extensions: 5498
Number of sequences better than 10.0: 9
Number of HSP's gapped: 5495
Number of HSP's successfully gapped: 9
Length of query: 227
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 118
Effective length of database: 70,788,284
Effective search space: 8353017512
Effective search space used: 8353017512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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