ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf70j18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001051504.1| Oryza sativa (japonica cultivar-group) Os01g... 500 e-138
2dbj|AK121648.1| Oryza sativa (japonica cultivar-group) cDNA clon... 500 e-138
3dbj|AK100486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 500 e-138
4dbj|AK073144.1| Oryza sativa (japonica cultivar-group) cDNA clon... 500 e-138
5dbj|AK072910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 500 e-138
6dbj|AK065101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 500 e-138
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 281 2e-72
8dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 281 2e-72
9gb|AY109716.1| Zea mays CL6008_1 mRNA sequence 155 2e-34
10emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chr... 44 0.64
11gb|AC124469.4| Mus musculus BAC clone RP24-172B22 from chromosom... 42 2.5
12gb|AC121891.2| Mus musculus BAC clone RP24-155I9 from 8, complet... 42 2.5
13gb|AC117529.2| Homo sapiens chromosome 5 clone RP11-236F16, comp... 42 2.5
14gb|AC120440.5| Homo sapiens chromosome 11, clone CTD-2013B7, com... 42 2.5
15gb|AC104852.3| Homo sapiens chromosome 8, clone CTD-2571E19, com... 42 2.5
16gb|AC110057.3| Homo sapiens chromosome 11, clone CTD1-2361F20, c... 42 2.5
17gb|AC067849.6| Homo sapiens chromosome 8, clone RP11-709L14, com... 42 2.5
18gb|AC011179.9| Homo sapiens, clone RP11-11N24, complete sequence 42 2.5
19gb|AC153137.4| Mus musculus BAC clone RP23-471J16 from chromosom... 42 2.5
20gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome... 42 2.5
21gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, comple... 42 2.5
22gb|AC079376.26| Homo sapiens X BAC RP11-793H5 (Roswell Park Canc... 42 2.5
23gb|AC129501.3| Homo sapiens chromosome 11, clone RP11-1095K7, co... 42 2.5
24dbj|AP006622.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 42 2.5
25gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome 42 2.5 
>ref|NM_001051504.1| Oryza sativa (japonica cultivar-group) Os01g0876400 (Os01g0876400)
            mRNA, partial cds
          Length = 2155
 Score =  500 bits (252), Expect = e-138
 Identities = 505/588 (85%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
            ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 1545 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 1604

                                                                        
Query: 85   cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
            ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 1605 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 1664

                                                                        
Query: 145  aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
            || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1665 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 1724

                                                                        
Query: 205  ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttgcg 264
            ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||||
Sbjct: 1725 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttgcg 1784

                                                                        
Query: 265  agagatattgaaagtatcctttcatggaagtcagttgcctcctcgcagttagaccaactt 324
            | ||| |||||| | || || ||||||||   |||||| ||||| |||||| |||| || 
Sbjct: 1785 aaagaaattgaagggattctctcatggaaactagttgcttcctcacagttaaaccagcta 1844

                                                                        
Query: 325  gtcctggataatgtcatactcagatctgagtatgagcgatttcgggataagcaggttgac 384
             || |||||||||||||| ||||||| ||   |||  |||||||||| ||||||| ||||
Sbjct: 1845 ctcttggataatgtcataatcagatcagaacttgaaagatttcgggaaaagcaggctgac 1904

                                                                        
Query: 385  ttggagaataggagctttgttgtgatattcctgtgttttatttttggatgcctagccata 444
            ||||||||||| ||||||| ||| ||||||||| ||||| ||||||||||  |||| || 
Sbjct: 1905 ttggagaatagaagctttgctgtaatattcctgagttttgtttttggatgtttagcgatt 1964

                                                                        
Query: 445  gctaaattgtccataggtatgatattcaatatttgtagattatatgatttcgaaaagttg 504
            |||||  |||| ||||| |||||||| ||||  |||||||||||| |||| ||||| || 
Sbjct: 1965 gctaagctgtctataggcatgatatttaatacctgtagattatataattttgaaaaattc 2024

                                                                        
Query: 505  gatagggtaaaatccggatggcttgtgctgctgctgagcagctgcattgtggcctccatt 564
            |||||||||||||| |||||||||||| ||||| | ||||| |||||| | |||||||||
Sbjct: 2025 gatagggtaaaatctggatggcttgtgttgctgttcagcagttgcattatagcctccatt 2084

                                                            
Query: 565  ttggtgatacagtgatgtatgtactcatctccatataatcgcggctgc 612
            ||| | |||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 2085 ttgataatacagtgatgtaccta-tcaactccatataattgcggctgc 2131
to top
>dbj|AK121648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060D18, full
            insert sequence
          Length = 2204

 Score =  500 bits (252), Expect = e-138
 Identities = 505/588 (85%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
            ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 1572 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 1631

                                                                        
Query: 85   cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
            ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 1632 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 1691

                                                                        
Query: 145  aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
            || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1692 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 1751

                                                                        
Query: 205  ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttgcg 264
            ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||||
Sbjct: 1752 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttgcg 1811

                                                                        
Query: 265  agagatattgaaagtatcctttcatggaagtcagttgcctcctcgcagttagaccaactt 324
            | ||| |||||| | || || ||||||||   |||||| ||||| |||||| |||| || 
Sbjct: 1812 aaagaaattgaagggattctctcatggaaactagttgcttcctcacagttaaaccagcta 1871

                                                                        
Query: 325  gtcctggataatgtcatactcagatctgagtatgagcgatttcgggataagcaggttgac 384
             || |||||||||||||| ||||||| ||   |||  |||||||||| ||||||| ||||
Sbjct: 1872 ctcttggataatgtcataatcagatcagaacttgaaagatttcgggaaaagcaggctgac 1931

                                                                        
Query: 385  ttggagaataggagctttgttgtgatattcctgtgttttatttttggatgcctagccata 444
            ||||||||||| ||||||| ||| ||||||||| ||||| ||||||||||  |||| || 
Sbjct: 1932 ttggagaatagaagctttgctgtaatattcctgagttttgtttttggatgtttagcgatt 1991

                                                                        
Query: 445  gctaaattgtccataggtatgatattcaatatttgtagattatatgatttcgaaaagttg 504
            |||||  |||| ||||| |||||||| ||||  |||||||||||| |||| ||||| || 
Sbjct: 1992 gctaagctgtctataggcatgatatttaatacctgtagattatataattttgaaaaattc 2051

                                                                        
Query: 505  gatagggtaaaatccggatggcttgtgctgctgctgagcagctgcattgtggcctccatt 564
            |||||||||||||| |||||||||||| ||||| | ||||| |||||| | |||||||||
Sbjct: 2052 gatagggtaaaatctggatggcttgtgttgctgttcagcagttgcattatagcctccatt 2111

                                                            
Query: 565  ttggtgatacagtgatgtatgtactcatctccatataatcgcggctgc 612
            ||| | |||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 2112 ttgataatacagtgatgtaccta-tcaactccatataattgcggctgc 2158
to top
>dbj|AK100486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097N16, full
            insert sequence
          Length = 2140

 Score =  500 bits (252), Expect = e-138
 Identities = 505/588 (85%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
            ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 983  gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 1042

                                                                        
Query: 85   cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
            ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 1043 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 1102

                                                                        
Query: 145  aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
            || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1103 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 1162

                                                                        
Query: 205  ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttgcg 264
            ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||||
Sbjct: 1163 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttgcg 1222

                                                                        
Query: 265  agagatattgaaagtatcctttcatggaagtcagttgcctcctcgcagttagaccaactt 324
            | ||| |||||| | || || ||||||||   |||||| ||||| |||||| |||| || 
Sbjct: 1223 aaagaaattgaagggattctctcatggaaactagttgcttcctcacagttaaaccagcta 1282

                                                                        
Query: 325  gtcctggataatgtcatactcagatctgagtatgagcgatttcgggataagcaggttgac 384
             || |||||||||||||| ||||||| ||   |||  |||||||||| ||||||| ||||
Sbjct: 1283 ctcttggataatgtcataatcagatcagaacttgaaagatttcgggaaaagcaggctgac 1342

                                                                        
Query: 385  ttggagaataggagctttgttgtgatattcctgtgttttatttttggatgcctagccata 444
            ||||||||||| ||||||| ||| ||||||||| ||||| ||||||||||  |||| || 
Sbjct: 1343 ttggagaatagaagctttgctgtaatattcctgagttttgtttttggatgtttagcgatt 1402

                                                                        
Query: 445  gctaaattgtccataggtatgatattcaatatttgtagattatatgatttcgaaaagttg 504
            |||||  |||| ||||| |||||||| ||||  |||||||||||| |||| ||||| || 
Sbjct: 1403 gctaagctgtctataggcatgatatttaatacctgtagattatataattttgaaaaattc 1462

                                                                        
Query: 505  gatagggtaaaatccggatggcttgtgctgctgctgagcagctgcattgtggcctccatt 564
            |||||||||||||| |||||||||||| ||||| | ||||| |||||| | |||||||||
Sbjct: 1463 gatagggtaaaatctggatggcttgtgttgctgttcagcagttgcattatagcctccatt 1522

                                                            
Query: 565  ttggtgatacagtgatgtatgtactcatctccatataatcgcggctgc 612
            ||| | |||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 1523 ttgataatacagtgatgtaccta-tcaactccatataattgcggctgc 1569
to top
>dbj|AK073144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020E06, full
            insert sequence
          Length = 2202

 Score =  500 bits (252), Expect = e-138
 Identities = 505/588 (85%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
            ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 1569 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 1628

                                                                        
Query: 85   cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
            ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 1629 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 1688

                                                                        
Query: 145  aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
            || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1689 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 1748

                                                                        
Query: 205  ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttgcg 264
            ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||||
Sbjct: 1749 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttgcg 1808

                                                                        
Query: 265  agagatattgaaagtatcctttcatggaagtcagttgcctcctcgcagttagaccaactt 324
            | ||| |||||| | || || ||||||||   |||||| ||||| |||||| |||| || 
Sbjct: 1809 aaagaaattgaagggattctctcatggaaactagttgcttcctcacagttaaaccagcta 1868

                                                                        
Query: 325  gtcctggataatgtcatactcagatctgagtatgagcgatttcgggataagcaggttgac 384
             || |||||||||||||| ||||||| ||   |||  |||||||||| ||||||| ||||
Sbjct: 1869 ctcttggataatgtcataatcagatcagaacttgaaagatttcgggaaaagcaggctgac 1928

                                                                        
Query: 385  ttggagaataggagctttgttgtgatattcctgtgttttatttttggatgcctagccata 444
            ||||||||||| ||||||| ||| ||||||||| ||||| ||||||||||  |||| || 
Sbjct: 1929 ttggagaatagaagctttgctgtaatattcctgagttttgtttttggatgtttagcgatt 1988

                                                                        
Query: 445  gctaaattgtccataggtatgatattcaatatttgtagattatatgatttcgaaaagttg 504
            |||||  |||| ||||| |||||||| ||||  |||||||||||| |||| ||||| || 
Sbjct: 1989 gctaagctgtctataggcatgatatttaatacctgtagattatataattttgaaaaattc 2048

                                                                        
Query: 505  gatagggtaaaatccggatggcttgtgctgctgctgagcagctgcattgtggcctccatt 564
            |||||||||||||| |||||||||||| ||||| | ||||| |||||| | |||||||||
Sbjct: 2049 gatagggtaaaatctggatggcttgtgttgctgttcagcagttgcattatagcctccatt 2108

                                                            
Query: 565  ttggtgatacagtgatgtatgtactcatctccatataatcgcggctgc 612
            ||| | |||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 2109 ttgataatacagtgatgtaccta-tcaactccatataattgcggctgc 2155
to top
>dbj|AK072910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148N24, full
            insert sequence
          Length = 2800

 Score =  500 bits (252), Expect = e-138
 Identities = 505/588 (85%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
            ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 1529 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 1588

                                                                        
Query: 85   cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
            ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 1589 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 1648

                                                                        
Query: 145  aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
            || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1649 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 1708

                                                                        
Query: 205  ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttgcg 264
            ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||||
Sbjct: 1709 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttgcg 1768

                                                                        
Query: 265  agagatattgaaagtatcctttcatggaagtcagttgcctcctcgcagttagaccaactt 324
            | ||| |||||| | || || ||||||||   |||||| ||||| |||||| |||| || 
Sbjct: 1769 aaagaaattgaagggattctctcatggaaactagttgcttcctcacagttaaaccagcta 1828

                                                                        
Query: 325  gtcctggataatgtcatactcagatctgagtatgagcgatttcgggataagcaggttgac 384
             || |||||||||||||| ||||||| ||   |||  |||||||||| ||||||| ||||
Sbjct: 1829 ctcttggataatgtcataatcagatcagaacttgaaagatttcgggaaaagcaggctgac 1888

                                                                        
Query: 385  ttggagaataggagctttgttgtgatattcctgtgttttatttttggatgcctagccata 444
            ||||||||||| ||||||| ||| ||||||||| ||||| ||||||||||  |||| || 
Sbjct: 1889 ttggagaatagaagctttgctgtaatattcctgagttttgtttttggatgtttagcgatt 1948

                                                                        
Query: 445  gctaaattgtccataggtatgatattcaatatttgtagattatatgatttcgaaaagttg 504
            |||||  |||| ||||| |||||||| ||||  |||||||||||| |||| ||||| || 
Sbjct: 1949 gctaagctgtctataggcatgatatttaatacctgtagattatataattttgaaaaattc 2008

                                                                        
Query: 505  gatagggtaaaatccggatggcttgtgctgctgctgagcagctgcattgtggcctccatt 564
            |||||||||||||| |||||||||||| ||||| | ||||| |||||| | |||||||||
Sbjct: 2009 gatagggtaaaatctggatggcttgtgttgctgttcagcagttgcattatagcctccatt 2068

                                                            
Query: 565  ttggtgatacagtgatgtatgtactcatctccatataatcgcggctgc 612
            ||| | |||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 2069 ttgataatacagtgatgtaccta-tcaactccatataattgcggctgc 2115
to top
>dbj|AK065101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N02, full
            insert sequence
          Length = 2155

 Score =  500 bits (252), Expect = e-138
 Identities = 505/588 (85%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
            ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 1545 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 1604

                                                                        
Query: 85   cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
            ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 1605 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 1664

                                                                        
Query: 145  aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
            || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1665 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 1724

                                                                        
Query: 205  ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttgcg 264
            ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||||
Sbjct: 1725 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttgcg 1784

                                                                        
Query: 265  agagatattgaaagtatcctttcatggaagtcagttgcctcctcgcagttagaccaactt 324
            | ||| |||||| | || || ||||||||   |||||| ||||| |||||| |||| || 
Sbjct: 1785 aaagaaattgaagggattctctcatggaaactagttgcttcctcacagttaaaccagcta 1844

                                                                        
Query: 325  gtcctggataatgtcatactcagatctgagtatgagcgatttcgggataagcaggttgac 384
             || |||||||||||||| ||||||| ||   |||  |||||||||| ||||||| ||||
Sbjct: 1845 ctcttggataatgtcataatcagatcagaacttgaaagatttcgggaaaagcaggctgac 1904

                                                                        
Query: 385  ttggagaataggagctttgttgtgatattcctgtgttttatttttggatgcctagccata 444
            ||||||||||| ||||||| ||| ||||||||| ||||| ||||||||||  |||| || 
Sbjct: 1905 ttggagaatagaagctttgctgtaatattcctgagttttgtttttggatgtttagcgatt 1964

                                                                        
Query: 445  gctaaattgtccataggtatgatattcaatatttgtagattatatgatttcgaaaagttg 504
            |||||  |||| ||||| |||||||| ||||  |||||||||||| |||| ||||| || 
Sbjct: 1965 gctaagctgtctataggcatgatatttaatacctgtagattatataattttgaaaaattc 2024

                                                                        
Query: 505  gatagggtaaaatccggatggcttgtgctgctgctgagcagctgcattgtggcctccatt 564
            |||||||||||||| |||||||||||| ||||| | ||||| |||||| | |||||||||
Sbjct: 2025 gatagggtaaaatctggatggcttgtgttgctgttcagcagttgcattatagcctccatt 2084

                                                            
Query: 565  ttggtgatacagtgatgtatgtactcatctccatataatcgcggctgc 612
            ||| | |||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 2085 ttgataatacagtgatgtaccta-tcaactccatataattgcggctgc 2131
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  281 bits (142), Expect = 2e-72
 Identities = 214/238 (89%)
 Strand = Plus / Minus

                                                                            
Query: 25       gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
                ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 38021533 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 38021474

                                                                            
Query: 85       cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
                ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 38021473 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 38021414

                                                                            
Query: 145      aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
                || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 38021413 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 38021354

                                                                          
Query: 205      ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttg 262
                ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||
Sbjct: 38021353 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttg 38021296



 Score =  204 bits (103), Expect = 3e-49
 Identities = 215/251 (85%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                            
Query: 362      gatttcgggataagcaggttgacttggagaataggagctttgttgtgatattcctgtgtt 421
                |||||||||| ||||||| ||||||||||||||| ||||||| ||| ||||||||| |||
Sbjct: 38020853 gatttcgggaaaagcaggctgacttggagaatagaagctttgctgtaatattcctgagtt 38020794

                                                                            
Query: 422      ttatttttggatgcctagccatagctaaattgtccataggtatgatattcaatatttgta 481
                || ||||||||||  |||| || |||||  |||| ||||| |||||||| ||||  ||||
Sbjct: 38020793 ttgtttttggatgtttagcgattgctaagctgtctataggcatgatatttaatacctgta 38020734

                                                                            
Query: 482      gattatatgatttcgaaaagttggatagggtaaaatccggatggcttgtgctgctgctga 541
                |||||||| |||| ||||| || |||||||||||||| |||||||||||| ||||| | |
Sbjct: 38020733 gattatataattttgaaaaattcgatagggtaaaatctggatggcttgtgttgctgttca 38020674

                                                                            
Query: 542      gcagctgcattgtggcctccattttggtgatacagtgatgtatgtactcatctccatata 601
                |||| |||||| | |||||||||||| | |||||||||||||  || ||| |||||||||
Sbjct: 38020673 gcagttgcattatagcctccattttgataatacagtgatgtaccta-tcaactccatata 38020615

                           
Query: 602      atcgcggctgc 612
                || ||||||||
Sbjct: 38020614 attgcggctgc 38020604
to top
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  281 bits (142), Expect = 2e-72
 Identities = 214/238 (89%)
 Strand = Plus / Minus

                                                                          
Query: 25     gagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgatg 84
              ||||||||| || ||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 102477 gagacaaggccaattcaggctggcaggattcctggagatacagttcttaaggtactaatg 102418

                                                                          
Query: 85     cagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaactc 144
              ||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct: 102417 cagaaggtgcaatctcttgatgtgagcttttctgtcttggagcggtatctagaagaacta 102358

                                                                          
Query: 145    aacagcagatatggacaaatctttaaggattttgattctgatattgataacaaagatgca 204
              || ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 102357 aatagcagatatgggcaaatttttaaggattttgatgctgatattgataccaaagatgca 102298

                                                                        
Query: 205    ctcttggagaagataaaattggagttgaaggagcttcagagcagcaaaaatgactttg 262
              ||||||||||| || ||||||||| ||||| | ||| |||| |||||| |||||||||
Sbjct: 102297 ctcttggagaaaatcaaattggagctgaagcatcttgagagaagcaaagatgactttg 102240



 Score =  204 bits (103), Expect = 3e-49
 Identities = 215/251 (85%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                          
Query: 362    gatttcgggataagcaggttgacttggagaataggagctttgttgtgatattcctgtgtt 421
              |||||||||| ||||||| ||||||||||||||| ||||||| ||| ||||||||| |||
Sbjct: 101797 gatttcgggaaaagcaggctgacttggagaatagaagctttgctgtaatattcctgagtt 101738

                                                                          
Query: 422    ttatttttggatgcctagccatagctaaattgtccataggtatgatattcaatatttgta 481
              || ||||||||||  |||| || |||||  |||| ||||| |||||||| ||||  ||||
Sbjct: 101737 ttgtttttggatgtttagcgattgctaagctgtctataggcatgatatttaatacctgta 101678

                                                                          
Query: 482    gattatatgatttcgaaaagttggatagggtaaaatccggatggcttgtgctgctgctga 541
              |||||||| |||| ||||| || |||||||||||||| |||||||||||| ||||| | |
Sbjct: 101677 gattatataattttgaaaaattcgatagggtaaaatctggatggcttgtgttgctgttca 101618

                                                                          
Query: 542    gcagctgcattgtggcctccattttggtgatacagtgatgtatgtactcatctccatata 601
              |||| |||||| | |||||||||||| | |||||||||||||  || ||| |||||||||
Sbjct: 101617 gcagttgcattatagcctccattttgataatacagtgatgtaccta-tcaactccatata 101559

                         
Query: 602    atcgcggctgc 612
              || ||||||||
Sbjct: 101558 attgcggctgc 101548
to top
>gb|AY109716.1| Zea mays CL6008_1 mRNA sequence
          Length = 709

 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                       
Query: 24  agagacaaggacacttcaggctggcagaattcctggagatacagttcttaagatactgat 83
           ||||||||||||||||||||||||||| |||||||||||||| ||||||||| | || ||
Sbjct: 553 agagacaaggacacttcaggctggcaggattcctggagatactgttcttaaggtgctaat 494

                                                                       
Query: 84  gcagaaagtccaatctcttgatgtgagcttttctgtattggagcggtacctagaggaact 143
           ||||||||| ||||||||||| |||||||| ||||| |||||| ||||||||| ||| ||
Sbjct: 493 gcagaaagttcaatctcttgacgtgagcttctctgtcttggagaggtacctagtggagct 434

                         
Query: 144 caacagcagatatg 157
            |||| ||||||||
Sbjct: 433 gaacaacagatatg 420



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                       
Query: 476 tttgtagattatatgatttcgaaaagttggatagggtaaaatccggatggcttgtgctgc 535
           |||||||||| ||||| || || |||||  |||  |||| |||||| |||||||||||||
Sbjct: 101 tttgtagattctatgactttgagaagttccataatgtaagatccgggtggcttgtgctgc 42

                           
Query: 536 tgctgagcagctgcat 551
           |||| ||||| |||||
Sbjct: 41  tgcttagcagttgcat 26
to top
>emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chromosome 4, complete
              sequence
          Length = 220248

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 472    aatatttgtagattatatgatt 493
              ||||||||||||||||||||||
Sbjct: 203908 aatatttgtagattatatgatt 203887
to top
>gb|AC124469.4| Mus musculus BAC clone RP24-172B22 from chromosome 1, complete sequence
          Length = 162294

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 411    attcctgtgttttatttttgg 431
              |||||||||||||||||||||
Sbjct: 107382 attcctgtgttttatttttgg 107362
to top
>gb|AC121891.2| Mus musculus BAC clone RP24-155I9 from 8, complete sequence
          Length = 165890

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 316    gaccaacttgtcctggataatgtca 340
              |||||| ||||||||||||||||||
Sbjct: 152565 gaccaagttgtcctggataatgtca 152589
to top
>gb|AC117529.2| Homo sapiens chromosome 5 clone RP11-236F16, complete sequence
          Length = 162784

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 474    tatttgtagattatatgattt 494
              |||||||||||||||||||||
Sbjct: 141785 tatttgtagattatatgattt 141805
to top
>gb|AC120440.5| Homo sapiens chromosome 11, clone CTD-2013B7, complete sequence
          Length = 45460

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 133  ctagaggaactcaacagcagatatg 157
            |||||||| ||||||||||||||||
Sbjct: 8831 ctagaggagctcaacagcagatatg 8807
to top
>gb|AC104852.3| Homo sapiens chromosome 8, clone CTD-2571E19, complete sequence
          Length = 135983

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 133   ctagaggaactcaacagcagatatg 157
             |||||||| ||||||||||||||||
Sbjct: 96441 ctagaggagctcaacagcagatatg 96465
to top
>gb|AC110057.3| Homo sapiens chromosome 11, clone CTD1-2361F20, complete sequence
          Length = 168473

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 133   ctagaggaactcaacagcagatatg 157
             |||||||| ||||||||||||||||
Sbjct: 78736 ctagaggagctcaacagcagatatg 78760
to top
>gb|AC067849.6| Homo sapiens chromosome 8, clone RP11-709L14, complete sequence
          Length = 169453

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 133   ctagaggaactcaacagcagatatg 157
             |||||||| ||||||||||||||||
Sbjct: 59505 ctagaggagctcaacagcagatatg 59529
to top
>gb|AC011179.9| Homo sapiens, clone RP11-11N24, complete sequence
          Length = 153472

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 133    ctagaggaactcaacagcagatatg 157
              |||||||| ||||||||||||||||
Sbjct: 143678 ctagaggagctcaacagcagatatg 143654
to top
>gb|AC153137.4| Mus musculus BAC clone RP23-471J16 from chromosome 1, complete sequence
          Length = 201668

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   attcctgtgttttatttttgg 431
             |||||||||||||||||||||
Sbjct: 19230 attcctgtgttttatttttgg 19210
to top
>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence
          Length = 212654

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 316   gaccaacttgtcctggataatgtca 340
             |||||| ||||||||||||||||||
Sbjct: 47990 gaccaagttgtcctggataatgtca 48014
to top
>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence
          Length = 196085

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 450   attgtccataggtatgatatt 470
             |||||||||||||||||||||
Sbjct: 57611 attgtccataggtatgatatt 57591
to top
>gb|AC079376.26| Homo sapiens X BAC RP11-793H5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144431

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   acagcagatatggacaaatct 166
             |||||||||||||||||||||
Sbjct: 15844 acagcagatatggacaaatct 15824
to top
>gb|AC129501.3| Homo sapiens chromosome 11, clone RP11-1095K7, complete sequence
          Length = 179540

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 133    ctagaggaactcaacagcagatatg 157
              |||||||| ||||||||||||||||
Sbjct: 151814 ctagaggagctcaacagcagatatg 151790
to top
>dbj|AP006622.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1276E07, complete
             sequence
          Length = 114001

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 133   ctagaggaactcaacagcagatatg 157
             |||||||| ||||||||||||||||
Sbjct: 47250 ctagaggagctcaacagcagatatg 47226
to top
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 534    gctgctgagcagctgcattgtggcc 558
              ||||||| |||||||||||||||||
Sbjct: 285534 gctgctgtgcagctgcattgtggcc 285558


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 142,339,942
Number of extensions: 8313315
Number of successful extensions: 172889
Number of sequences better than 10.0: 25
Number of HSP's gapped: 172875
Number of HSP's successfully gapped: 28
Length of query: 681
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 659
Effective length of database: 18,508,616,841
Effective search space: 12197178498219
Effective search space used: 12197178498219
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top