ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf70j04 |
|---|---|
| Clone Library Name | barley_pub |
>Q5R7Q1:TMM42_PONPY Transmembrane protein 42 - Pongo pygmaeus (Orangutan)| Length = 159 Score = 37.4 bits (85), Expect = 0.066 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +1 Query: 223 NVTMWGCYVNSLK-ALSSLQATVTNFAANFISSGLAGYFLFQEPLPSKWFAGASLIILGV 399 N MW + L ++SS A+VT +N +SS GY L+ E W+ G LI+ G+ Sbjct: 81 NSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGL 140 Query: 400 FILSK 414 ++ + Sbjct: 141 TLIHR 145
>Q69YG0:TMM42_HUMAN Transmembrane protein 42 - Homo sapiens (Human)| Length = 159 Score = 37.4 bits (85), Expect = 0.066 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +1 Query: 223 NVTMWGCYVNSLK-ALSSLQATVTNFAANFISSGLAGYFLFQEPLPSKWFAGASLIILGV 399 N MW + L ++SS A+VT +N +SS GY L+ E W+ G LI+ G+ Sbjct: 81 NSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGL 140 Query: 400 FILSK 414 ++ + Sbjct: 141 TLIHR 145
>Q9CR22:TMM42_MOUSE Transmembrane protein 42 - Mus musculus (Mouse)| Length = 157 Score = 36.6 bits (83), Expect = 0.11 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +1 Query: 223 NVTMWGCYVNSLK-ALSSLQATVTNFAANFISSGLAGYFLFQEPLPSKWFAGASLIILGV 399 N MW + L ++SS A+VT +N + S + GY L+ E W+ G LI+ G+ Sbjct: 81 NSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSAILGYLLYGECQEILWWGGVFLILCGL 140 Query: 400 FILSK 414 ++ + Sbjct: 141 TLIHR 145
>Q65JB2:EBRB_BACLD Multidrug resistance protein ebrB - Bacillus licheniformis (strain| DSM 13 / ATCC 14580) Length = 119 Score = 36.6 bits (83), Expect = 0.11 Identities = 22/58 (37%), Positives = 28/58 (48%) Frame = +1 Query: 253 SLKALSSLQATVTNFAANFISSGLAGYFLFQEPLPSKWFAGASLIILGVFILSKSSIE 426 SLK L A T + G+F+FQEP K G +LII GVF+L+ E Sbjct: 50 SLKTLPLSAAYATWAGTGTALTAAIGHFIFQEPFNLKTLIGLTLIIGGVFLLNSKRTE 107
>Q03173:ENAH_MOUSE Protein enabled homolog - Mus musculus (Mouse)| Length = 802 Score = 32.7 bits (73), Expect = 1.6 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +2 Query: 116 ADTPGPSRRASTPRSPLYQPSSLPPCCSNTAW 211 A P P + S P SP+ PSS PP + AW Sbjct: 341 ATVPRPLNKNSRPSSPVNTPSSQPPAAKSCAW 372
>Q56072:EAMA_SALTY Probable amino acid metabolite efflux pump - Salmonella typhimurium| Length = 299 Score = 32.7 bits (73), Expect = 1.6 Identities = 24/78 (30%), Positives = 37/78 (47%) Frame = +1 Query: 190 MLLKYGMVILFNVTMWGCYVNSLKALSSLQATVTNFAANFISSGLAGYFLFQEPLPSKWF 369 +LL YG+ I F + + L + V A F + G F+F E L K Sbjct: 60 LLLGYGLTISFGQFAFLFCAIKFGMPAGLASLVLQAQAFFTMA--LGAFVFSERLQRKQL 117 Query: 370 AGASLIILGVFILSKSSI 423 AG +L I+GV +L ++S+ Sbjct: 118 AGIALAIIGVLVLIEASL 135
>Q65GD8:RNH3_BACLD Ribonuclease HIII - Bacillus licheniformis (strain DSM 13 / ATCC| 14580) Length = 313 Score = 31.2 bits (69), Expect = 4.7 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +2 Query: 86 ERDELRWRAEADTPGPSRRASTPRSP-LYQP 175 E++ RW A+A+TP P + AS P +YQP Sbjct: 59 EKEAERWTADAETPAPKKPASKKSIPSVYQP 89
>O29973:Y266_ARCFU Uncharacterized transporter AF_0266 - Archaeoglobus fulgidus| Length = 276 Score = 31.2 bits (69), Expect = 4.7 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +1 Query: 310 ISSGLAGYFLFQEPLPSKWFAGASLIILGVFIL 408 + S LAG L EPL + AG+ L++LG++I+ Sbjct: 240 VVSLLAGNILLAEPLTLRTVAGSGLVLLGIYIV 272
>P14182:LICB_HAEIN Protein licB - Haemophilus influenzae| Length = 292 Score = 31.2 bits (69), Expect = 4.7 Identities = 19/74 (25%), Positives = 34/74 (45%) Frame = +1 Query: 211 VILFNVTMWGCYVNSLKALSSLQATVTNFAANFISSGLAGYFLFQEPLPSKWFAGASLII 390 VI+F + CY ++ L ++A N + + GL GY L+++P+ L+ Sbjct: 220 VIIFGALSYCCYYQAIYLLKPIKAMALNITYSVWAIGL-GYLLYKQPIKPITLLLTLLLS 278 Query: 391 LGVFILSKSSIEEK 432 GV + E+K Sbjct: 279 AGVIVTLYYKGEQK 292
>Q4ZNV9:HISX_PSEU2 Histidinol dehydrogenase - Pseudomonas syringae pv. syringae| (strain B728a) Length = 448 Score = 30.4 bits (67), Expect = 8.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 267 VVPPGNCHQLRRQLHLVGSCRVFPVSGTSAF*VVCRCQFDHSW 395 VV PGN + + H+ G + ++G S VVC Q D W Sbjct: 215 VVGPGNIYVATAKRHVFGQVGIDMIAGPSEILVVCDGQTDPDW 257
>Q87WV5:HISX_PSESM Histidinol dehydrogenase - Pseudomonas syringae pv. tomato| Length = 448 Score = 30.4 bits (67), Expect = 8.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 267 VVPPGNCHQLRRQLHLVGSCRVFPVSGTSAF*VVCRCQFDHSW 395 VV PGN + + H+ G + ++G S VVC Q D W Sbjct: 215 VVGPGNIYVATAKRHVFGQVGIDMIAGPSEILVVCDGQTDPDW 257
>Q3KHZ2:HISX_PSEPF Histidinol dehydrogenase - Pseudomonas fluorescens (strain PfO-1)| Length = 441 Score = 30.4 bits (67), Expect = 8.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 267 VVPPGNCHQLRRQLHLVGSCRVFPVSGTSAF*VVCRCQFDHSW 395 VV PGN + + H+ G + ++G S VVC Q D W Sbjct: 215 VVGPGNIYVATAKRHVFGQVGIDMIAGPSEILVVCDGQTDPDW 257
>Q4KI73:HISX_PSEF5 Histidinol dehydrogenase - Pseudomonas fluorescens (strain Pf-5 /| ATCC BAA-477) Length = 442 Score = 30.4 bits (67), Expect = 8.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 267 VVPPGNCHQLRRQLHLVGSCRVFPVSGTSAF*VVCRCQFDHSW 395 VV PGN + + H+ G + ++G S VVC Q D W Sbjct: 215 VVGPGNIYVATAKRHVFGQVGIDMIAGPSEILVVCDGQTDPDW 257
>Q48EC9:HISX_PSE14 Histidinol dehydrogenase - Pseudomonas syringae pv. phaseolicola| (strain 1448A / Race 6) Length = 448 Score = 30.4 bits (67), Expect = 8.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 267 VVPPGNCHQLRRQLHLVGSCRVFPVSGTSAF*VVCRCQFDHSW 395 VV PGN + + H+ G + ++G S VVC Q D W Sbjct: 215 VVGPGNIYVATAKRHVFGQVGIDMIAGPSEILVVCDGQTDPDW 257 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 138,359,377 Number of extensions: 3069999 Number of successful extensions: 6866 Number of sequences better than 10.0: 14 Number of HSP's gapped: 6859 Number of HSP's successfully gapped: 14 Length of query: 259 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 148 Effective length of database: 70,239,694 Effective search space: 10395474712 Effective search space used: 10395474712 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
