ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf67h08 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os08g42380:12008.t03967:unspliced-genomic mitochondrial import inner membrane translocase subunit Tim8,| putative, expressed Length = 1078 Score = 133 bits (286), Expect = 7e-31 Identities = 53/64 (82%), Positives = 61/64 (95%) Frame = +3 / +2 Query: 117 LEQEKQRMMMSEMVTKLTNVCWDKCITGTPGSKFSSGETTCLTNCAQRYLDMSMIIAKRF 296 L+QE+Q+ M+SEMV KLT+VCWDKCIT TPGSKFSSGETTCLTNCAQR+LDMS+IIAKRF Sbjct: 887 LQQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVIIAKRF 1066 Query: 297 QMQ* 308 +MQ* Sbjct: 1067 EMQ* 1078 Score = 83.5 bits (176), Expect = 1e-15 Identities = 39/62 (62%), Positives = 46/62 (74%) Frame = +2 / +1 Query: 122 AREAKDDDE*DGNQADECVLGQMHHRHPRKQVQLR*NYLPDQLRSEVSGHEYDNCEEVSD 301 AR A+ + E DG QA + VLGQ+HH+H RKQVQLR N LPDQLRSEV HE D+ + V D Sbjct: 892 ARAAEGNGERDGRQAHKRVLGQVHHQHSRKQVQLRGNDLPDQLRSEVP*HERDHRQTV*D 1071 Query: 302 AV 307 AV Sbjct: 1072 AV 1077 Score = 83.1 bits (175), Expect = 1e-15 Identities = 38/45 (84%), Positives = 39/45 (86%) Frame = -1 / -2 Query: 307 YCI*NLFAIIILMSRYL*AQLVRQVVSPELNLLPGVPVMHLSQHT 173 YCI N A+I LMSR L*AQLVRQVVSPELNLLPGV VMHLSQHT Sbjct: 1077 YCISNRLAMITLMSRNL*AQLVRQVVSPELNLLPGVLVMHLSQHT 943 Score = 79.9 bits (168), Expect = 1e-14 Identities = 32/45 (71%), Positives = 35/45 (77%) Frame = -3 / -1 Query: 308 LLHLKPLRNYHTHVQIPLSAIGQAGSFTGAELASWGAGDAFVPAH 174 LLHLKP + H HV+ PLSA+GQA F GAELASW AGDA VPAH Sbjct: 1078 LLHLKPFGDDHAHVKEPLSAVGQASRFPGAELASWSAGDALVPAH 944 Score = 62.9 bits (131), Expect = 2e-09 Identities = 27/42 (64%), Positives = 31/42 (73%) Frame = -2 / -3 Query: 306 TASETSSQLSYSCPDTSERNWSGR*FHRS*TCFLGCR*CICP 181 TAS+T + S SC TSER+WSG+ F RS*TCFL C *C CP Sbjct: 1076 TASQTVWR*SRSCQGTSERSWSGKSFPRS*TCFLECW*CTCP 951 Score = 35.4 bits (71), Expect = 0.30 Identities = 23/54 (42%), Positives = 25/54 (46%) Frame = +1 / +3 Query: 145 *VRW*PS*RMCAGTNXXXXXXXXXXXXVKLPA*PIALRGIWT*V**LRRGFRCS 306 * RW S + CAGT+ K A*P ALRG T* * G RCS Sbjct: 915 *ARWSASSQACAGTSASPALQEASSAPGKRLA*PTALRGSLT*A*SSPNGLRCS 1076
>LOC_Os11g03710:12011.t00262:unspliced-genomic mitochondrial import inner membrane translocase subunit Tim8,| putative, expressed Length = 1942 Score = 92.7 bits (196), Expect = 2e-18 Identities = 32/59 (54%), Positives = 48/59 (81%) Frame = +3 / +2 Query: 117 LEQEKQRMMMSEMVTKLTNVCWDKCITGTPGSKFSSGETTCLTNCAQRYLDMSMIIAKR 293 L++EK++ M +E V KLT+VCWDKCITG+ GS FS+ E +CL+NCA+R+ ++ M+I +R Sbjct: 1511 LQEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQR 1687 Score = 37.7 bits (76), Expect = 0.062 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = -3 / -1 Query: 290 LRNYHTHVQIPLSAIGQAGSFTGAELASWGAGDAFVPAHIRQ 165 L + H + A+GQ F AE AS DAFVPA+I Q Sbjct: 1684 LHDEHLQFEKAFRAVGQTRGFAVAEAASNAPSDAFVPANISQ 1559 Score = 35.4 bits (71), Expect = 0.30 Identities = 19/35 (54%), Positives = 21/35 (60%) Frame = -1 / -2 Query: 277 ILMSRYL*AQLVRQVVSPELNLLPGVPVMHLSQHT 173 I S+ AQL R S L LLP +PVMHLSQ T Sbjct: 1671 IFSSKKRFAQLDRHEASLLLKLLPMLPVMHLSQQT 1567 Score = 34.1 bits (68), Expect = 0.78 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +2 / +1 Query: 161 QADECVLGQMHHRHPRKQVQLR*NYLPDQLR 253 +AD C+LGQMHH KQ+Q + + + QLR Sbjct: 1555 EAD*CLLGQMHHWEHWKQLQQQRSLVSVQLR 1647
>LOC_Os12g03460:12012.t00239:unspliced-genomic mitochondrial import inner membrane translocase subunit Tim8,| putative Length = 2051 Score = 91.8 bits (194), Expect = 3e-18 Identities = 32/59 (54%), Positives = 48/59 (81%) Frame = +3 / +2 Query: 117 LEQEKQRMMMSEMVTKLTNVCWDKCITGTPGSKFSSGETTCLTNCAQRYLDMSMIIAKR 293 L++EK++ M +E V KLT+VCWDKCITG+ GS FS+ E +CL+NCA+R+L++ M+ +R Sbjct: 1601 LQEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLTMQR 1777 Score = 37.3 bits (75), Expect = 0.085 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -3 / -2 Query: 290 LRNYHTHVQIPLSAIGQAGSFTGAELASWGAGDAFVPAHIRQ 165 L H + A+GQ F AE AS DAFVPA+I Q Sbjct: 1774 LHGEHLQFEKAFCAVGQTRGFAVAEAASNAPSDAFVPANISQ 1649 Score = 37.3 bits (75), Expect = 0.085 Identities = 20/37 (54%), Positives = 22/37 (59%) Frame = -1 / -3 Query: 283 IIILMSRYL*AQLVRQVVSPELNLLPGVPVMHLSQHT 173 + I SR AQL R S L LLP +PVMHLSQ T Sbjct: 1767 VSIFSSRKRFAQLDRHEASLLLKLLPMLPVMHLSQQT 1657 Score = 36.3 bits (73), Expect = 0.16 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = +2 / +1 Query: 161 QADECVLGQMHHRHPRKQVQLR*NYLPDQLRSEVSGHE 274 +AD C+LGQMHH KQ+Q + + + QLR +S E Sbjct: 1645 EAD*CLLGQMHHWEHWKQLQQQRSLVSVQLRKTLSRTE 1758
>LOC_Os01g21034:12001.t01840:unspliced-genomic pectinesterase-2 precursor, putative, expressed| Length = 9328 Score = 39.6 bits (80), Expect = 0.017 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +2 / -1 Query: 59 RTSESARGSHGHLPRASPVPGAREAKDDDE*DGNQADECVLGQMHHRHPR 208 R S + R G PRA+P PGA + G C Q+HH H + Sbjct: 8545 RRSCTGRTPTGRRPRAAPPPGASTGRPSSRSSGRGPGSCCPPQLHHNHAK 8396
>LOC_Os02g45820:12002.t04169:unspliced-genomic mitochondrial import inner membrane translocase subunit Tim13,| putative, expressed Length = 2516 Score = 35.9 bits (72), Expect = 0.22 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +3 / +2 Query: 204 PGSKFSSGETTCLTNCAQRYLDMSMIIAK 290 PGS S E++C++ C RY++ + I+++ Sbjct: 2066 PGSSLSGSESSCISRCVDRYIEATGIVSR 2152
>LOC_Os04g12900:12004.t01112:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2206 Score = 29.5 bits (58), Expect(2) = 0.49 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 / +1 Query: 321 SWRRPTASETSSQLSYSCPDTSERNWSGR* 232 SWRR AS + C T +NWS R* Sbjct: 250 SWRRCWASSMGWRTPTMCSSTLSKNWSRR* 339 Score = 25.8 bits (50), Expect(2) = 0.49 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 / +2 Query: 76 RRLARP*NPKPLLVFAWTRRRTTG 5 RRLARP +P + A + RT G Sbjct: 542 RRLARPCHPSTWMTIACNQTRTMG 613
>LOC_Os12g10310:12012.t00908:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 4511 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 2857 SAICSEKLVSTIVALLSKDSPVS 2789
>LOC_Os11g10500:12011.t00940:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 6212 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 4609 SAICSEKLVSTIVALLSKDSPVS 4541
>LOC_Os08g28040:12008.t02561:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 3093 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 2543 SAICSEKLVSTIVALLSKDSPVS 2475
>LOC_Os08g26690:12008.t02433:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 4123 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 2517 SAICSEKLVSTIVALLSKDSPVS 2449
>LOC_Os07g34300:12007.t03106:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 2581 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -1 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 925 SAICSEKLVSTIVALLSKDSPVS 857
>LOC_Os04g49220:12004.t04438:unspliced-genomic tim10/DDP family zinc finger containing protein| Length = 5344 Score = 34.5 bits (69), Expect = 0.56 Identities = 9/29 (31%), Positives = 20/29 (68%) Frame = +3 / +1 Query: 204 PGSKFSSGETTCLTNCAQRYLDMSMIIAK 290 PG+ S E++C++ C RY++ + I+++ Sbjct: 2710 PGTSLSGSESSCISRCVDRYIEATGIVSR 2796
>LOC_Os04g14960:12004.t01313:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass, expressed| Length = 2084 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 1909 SAICSEKLVSTIVALLSKDSPVS 1841
>LOC_Os04g13550:12004.t01174:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 5384 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -3 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 4254 SAICSEKLVSTIVALLSKDSPVS 4186
>LOC_Os03g25100:12003.t02202:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 4472 Score = 34.5 bits (69), Expect = 0.56 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS +V LLS DSP+S Sbjct: 3262 SAICSEKLVSTIVALLSKDSPVS 3194
>LOC_Os04g33600:12004.t03036:unspliced-genomic catalytic/ hydrolase, putative, expressed| Length = 5120 Score = 34.5 bits (69), Expect = 0.57 Identities = 16/56 (28%), Positives = 23/56 (41%) Frame = -2 / +2 Query: 399 TVKTRHCWHVKRKLRVWKVFDDATGCSWRRPTASETSSQLSYSCPDTSERNWSGR* 232 T + W V+R+ W T CSW + S S + SC S + +G * Sbjct: 3776 TPRATQTWQVQRRASPWTSRSSPTTCSWAPSSTSWASPWAARSCGAASNTSHTGN* 3943
>LOC_Os01g24220:12001.t02144:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 2364 Score = 34.1 bits (68), Expect = 0.77 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E LVS ++ LLS DSP+S Sbjct: 710 SAICSEKLVSTIIALLSKDSPVS 642
>LOC_Os07g28910:12007.t02581:unspliced-genomic LSD1 zinc finger family protein, expressed| Length = 4717 Score = 33.6 bits (67), Expect = 1.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 / -2 Query: 278 DNCEEVSDAVGRLQLQPVASSKTFQTLSFLFTCQQWR 388 D EE+ ++GRL + P + + +S L+ CQ WR Sbjct: 960 DGDEELKISLGRLLVSPPPRACDYGDMSLLYCCQGWR 850
>LOC_Os03g22600:12003.t02010:unspliced-genomic transposon protein, putative, Mutator sub-class, expressed| Length = 2697 Score = 33.6 bits (67), Expect = 1.1 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -2 / +1 Query: 390 TRHCWHVKRKLRVWKVFDDATGCSWRRPTASETSSQLSYSCPDTSERNWSGR 235 +R W +R+ + +GCS RP+ +SS S P R WS R Sbjct: 1351 SRRRWRRRRRASAGPTWRSGSGCSSTRPSWRTSSSPPGPSPPRRRRRRWSTR 1506
>LOC_Os11g02010:12011.t00096:unspliced-genomic expressed protein| Length = 1443 Score = 26.7 bits (52), Expect(2) = 1.2 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = +2 / +2 Query: 191 HHRHPRKQVQLR 226 HHRHPR+++ LR Sbjct: 545 HHRHPRRRLLLR 580 Score = 24.0 bits (46), Expect(2) = 1.2 Identities = 8/12 (66%), Positives = 10/12 (83%) Frame = +2 / +1 Query: 92 HLPRASPVPGAR 127 H+ RASP PG+R Sbjct: 424 HICRASPAPGSR 459
>LOC_Os06g38400:12006.t03535:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 5605 Score = 33.1 bits (66), Expect = 1.5 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -3 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+S +V LLS DSP+S Sbjct: 4319 SAICSEKLMSTIVALLSKDSPVS 4251
>LOC_Os05g25110:12005.t02167:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 4203 Score = 33.1 bits (66), Expect = 1.5 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -3 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+S +V LLS DSP+S Sbjct: 2551 SAICSEKLMSTIVALLSKDSPVS 2483
>LOC_Os01g42920:12001.t03809:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 2661 Score = 33.1 bits (66), Expect = 1.5 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+S +V LLS DSP+S Sbjct: 1472 SAICSEKLMSTIVALLSKDSPVS 1404
>LOC_Os01g01320:12001.t00031:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3214 Score = 33.1 bits (66), Expect = 1.5 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -3 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+S +V LLS DSP+S Sbjct: 1727 SAICSEKLMSTIVALLSKDSPVS 1659
>LOC_Os09g12920:12009.t01082:unspliced-genomic hypothetical protein| Length = 471 Score = 33.1 bits (66), Expect = 1.5 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +2 / -1 Query: 17 PPCPSKNQKGFRVLRTSESARGSHGHLPRASPVPGAREAK 136 P P +NQ+ R++ + A S H P A P P +REAK Sbjct: 129 PLPPVRNQRRRRLIVSPMGAASSSPHPPEALPQPVSREAK 10
>LOC_Os02g12170:12002.t01015:unspliced-genomic hypothetical protein| Length = 1281 Score = 27.6 bits (54), Expect(2) = 1.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 / -2 Query: 298 RCSRASPTAAGCVIKNFPNSELP 366 RC A+ T GC + NF N+ +P Sbjct: 758 RCPIANYTILGCPVANFANNFIP 690 Score = 24.9 bits (48), Expect(2) = 1.8 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +2 / -1 Query: 86 HGHLPRASPVPGAREAKDDD 145 +GHLP+ + P R +DD Sbjct: 1152 NGHLPKGNSPPPRRRTTEDD 1093
>LOC_Os08g25750:12008.t02342:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 3072 Score = 32.7 bits (65), Expect = 2.0 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+S +V LLS DSP+S Sbjct: 1418 STICSEKLMSAIVALLSKDSPVS 1350
>LOC_Os04g29800:12004.t02667:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass, expressed| Length = 3683 Score = 32.7 bits (65), Expect = 2.0 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPI 503 S IC E LVS +V LLS DSP+ Sbjct: 2500 SAICSEKLVSTIVALLSKDSPV 2435
>LOC_Os04g02310:12004.t00125:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 6547 Score = 32.7 bits (65), Expect = 2.0 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC + LVS +V LLS DSP+S Sbjct: 3117 SAICSKKLVSTIVALLSKDSPVS 3049
>LOC_Os04g46660:12004.t04195:unspliced-genomic cyclin-dependent protein kinase, putative, expressed| Length = 1284 Score = 32.7 bits (65), Expect = 2.0 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 / +1 Query: 363 KLRVWKVFDDATGCSWRRPTASETSSQLSYSCPDTS 256 + R W F AT C+ RPT S S Q S S P +S Sbjct: 661 RTRTWTGFAAATACASCRPTPSGCSPQPSSSPPSSS 768
>LOC_Os01g61470:12001.t05526:unspliced-genomic RING-H2 finger protein ATL3C, putative| Length = 570 Score = 32.7 bits (65), Expect = 2.0 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 / -1 Query: 41 KGFRVLRTSESARGSHGHLPRASPVPGAREAKDDDE*DGNQADECVLGQMHHRH 202 +G R +R E+ G GH R + V A + E DG++ADE + RH Sbjct: 258 RGRRSVRRGEAGAGGGGHRRRVAAVAVAVARPAEVEGDGDEADEDEEERHEERH 97
>LOC_Os11g39750:12011.t03517:unspliced-genomic hypothetical protein| Length = 564 Score = 32.2 bits (64), Expect = 2.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 / +2 Query: 357 RVWKVFDDATGCSWRRPTASET 292 R W+ TG WRRPTAS T Sbjct: 242 RGWRTRSRRTGTRWRRPTASRT 307
>LOC_Os04g31430:12004.t02825:unspliced-genomic expressed protein| Length = 506 Score = 32.2 bits (64), Expect = 2.8 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 / -1 Query: 330 TGCSWRRPTASETSSQLSYSCPDTSERNWSG 238 +G + R + QL +SCP + R+WSG Sbjct: 137 SGAAARAAMPTSVQQQLPFSCPHAAARSWSG 45
>LOC_Os11g31060:12011.t02706:unspliced-genomic BAG domain containing protein, expressed| Length = 1617 Score = 31.8 bits (63), Expect = 3.8 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 / -1 Query: 56 LRTSESARGSHGHLPRASPVPGAR 127 LR S+ R HGH PR +P GAR Sbjct: 348 LRPSKLHRDGHGHRPRPAPPRGAR 277
>LOC_Os07g25540:12007.t02251:unspliced-genomic disulfide oxidoreductase/ monooxygenase/ oxidoreductase, putative,| expressed Length = 2296 Score = 31.8 bits (63), Expect = 3.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 / +2 Query: 327 GCSWRRPTASETSSQLSYSCPDTSER 250 GC WRR AS + S+S P S R Sbjct: 59 GCRWRRACASAACRRCSWSAPTASRR 136
>LOC_Os06g39970:12006.t03694:unspliced-genomic CESA11 - cellulose synthase| Length = 3210 Score = 31.8 bits (63), Expect = 3.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -2 / +2 Query: 351 WKVFDDATGCSWRRPTASETSSQLSYSCPDTSERNWSG 238 W+ F D++G SWRR T S S + R SG Sbjct: 3035 WRTFRDSSGGSWRRETGRRRPSPCSGRWSSSPWRRCSG 3148
>LOC_Os01g01410:12001.t00040:unspliced-genomic leucine-rich repeat receptor protein kinase EXS precursor,| putative, expressed Length = 3897 Score = 31.8 bits (63), Expect = 3.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 / +2 Query: 339 DDATGCSWRRPTASETSSQLSYSCPDTS 256 +D WRRP+++ +SS S SCP S Sbjct: 62 EDTDRRPWRRPSSASSSSSSSSSCPPPS 145
>LOC_Os03g04100:12003.t00291:unspliced-genomic expressed protein| Length = 5161 Score = 31.3 bits (62), Expect = 5.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 / -3 Query: 99 PELAQFLEQEKQRMMMSEMVTKLTNVCWDKCI 194 P+ F ++KQR + +VTKL + W CI Sbjct: 2246 PQTIVFFSRQKQRTVNLFLVTKLVKIQWRLCI 2151
>LOC_Os12g19910:12012.t01834:unspliced-genomic hypothetical protein| Length = 1945 Score = 31.3 bits (62), Expect = 5.3 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 / +2 Query: 95 LPRASPVPGAREAKDDDE*DGN 160 LP A P PG +A D+D DGN Sbjct: 1052 LPHAGPQPGPDDAADEDPDDGN 1117
>LOC_Os04g39420:12004.t03512:unspliced-genomic 6-phosphofructokinase 2, putative, expressed| Length = 2377 Score = 31.3 bits (62), Expect = 5.3 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -2 / +2 Query: 399 TVKTRHCWHVKRKLRVW 349 T+ T HCWH++R + W Sbjct: 1919 TICTVHCWHIRRSMGSW 1969
>LOC_Os04g59494:12004.t05406:unspliced-genomic transportin-2, putative, expressed| Length = 13425 Score = 30.4 bits (60), Expect(2) = 5.5 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 / -1 Query: 176 VLGQMHHRHPRKQVQLR*NYLPDQL 250 V Q HH HP + V+LR ++ P QL Sbjct: 12723 VRSQPHHLHPHRLVRLRRHHTPRQL 12649 Score = 23.5 bits (45), Expect(2) = 5.5 Identities = 9/24 (37%), Positives = 11/24 (45%) Frame = +3 / -3 Query: 234 TCLTNCAQRYLDMSMIIAKRFQMQ 305 TC CA Y M + KR +Q Sbjct: 2236 TC*PECANMYTPPQMHVVKRISIQ 2165
>LOC_Os04g36720:12004.t03293:unspliced-genomic ferric reductase-like transmembrane component, putative, expressed| Length = 4345 Score = 30.9 bits (61), Expect = 7.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 / -2 Query: 150 EMVTKLTNVCWDKCITGTPGSKFSSGETTCLTNCA 254 E++ LTN WD +T S+ S ET L NCA Sbjct: 3195 ELLYALTNGGWDSWVTKAWMSRCSLSETDELMNCA 3091
>LOC_Os05g49320:12005.t04365:unspliced-genomic 50S ribosomal protein L12-1, chloroplast precursor, putative,| expressed Length = 745 Score = 30.9 bits (61), Expect = 7.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 / +1 Query: 327 GCSWRRPTASETSSQLSYSCPDTSER 250 G WRRP AS T+S+ + +CP R Sbjct: 223 GSPWRRPGASWTTSRSASACPRPRSR 300
>LOC_Os03g34210:12003.t03009:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 3661 Score = 30.9 bits (61), Expect = 7.2 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1 / +1 Query: 478 SYCRLILRSVSWFHFKSKKKK 540 S C L LRS+SWF K K KK Sbjct: 1558 SPCNLALRSMSWFLLKKK*KK 1620
>LOC_Os02g54720:12002.t05050:unspliced-genomic expressed protein| Length = 3332 Score = 30.9 bits (61), Expect = 7.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 / +2 Query: 5 SGSSPPCPSKNQKGFRVLRTSESARGSH 88 SG+S PCPS+ + R S S RG H Sbjct: 1103 SGTSRPCPSRRDRRRRRRHRSASRRGLH 1186
>LOC_Os01g29580:12001.t02644:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3145 Score = 27.2 bits (53), Expect(2) = 9.4 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +1 / +2 Query: 244 PIALRGIWT*V**LRRGFRCSRASPTAAGC 333 P RG W V G RCS +P A GC Sbjct: 626 PRGSRGPWCSVTTFIAGSRCSSGAPGAPGC 715 Score = 24.0 bits (46), Expect(2) = 9.4 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = +2 / +2 Query: 8 GSSPPCPSKNQKGFR 52 GS+PP P+K FR Sbjct: 488 GSTPPSPTKRASDFR 532
>LOC_Os09g02630:12009.t00162:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 5753 Score = 30.4 bits (60), Expect = 9.8 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+S +V L S DSP+S Sbjct: 4684 SAICSEKLMSTIVALQSKDSPVS 4616
>LOC_Os01g71220:12001.t06418:unspliced-genomic RING zinc finger protein, putative, expressed| Length = 4866 Score = 30.4 bits (60), Expect = 9.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 / -1 Query: 138 MMMSEMVTKLTNVCWDKCITGTP 206 M+M MVT + + CW +C TP Sbjct: 3129 MVMMVMVTMMVHGCWTRCFRTTP 3061
>LOC_Os01g23470:12001.t02073:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 2442 Score = 30.4 bits (60), Expect = 9.8 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 / -2 Query: 438 SCICGEPLVSFLVKLLSFDSPIS 506 S IC E L+ +V LLS DSP+S Sbjct: 1910 SAICSEKLMLTIVALLSKDSPVS 1842
>LOC_Os01g19290:12001.t01719:unspliced-genomic nodulin-like protein, putative, expressed| Length = 3500 Score = 30.4 bits (60), Expect = 9.8 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -3 / -3 Query: 287 RNYHTHVQIPLSAIGQAGSFTGAELASWGAGDAFVPAHIRQ 165 R HT+V++PL +G+ G G + + G D A +++ Sbjct: 402 RYRHTYVRVPLEVVGEGGEEDGGDDVAVGDEDVGAHAGVQR 280
>LOC_Os06g25900:12006.t02397:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4257 Score = 30.4 bits (60), Expect = 9.9 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 / +1 Query: 95 LPRASPVPGAREAKDDDE*DGN 160 LP A P PG +A D+D DGN Sbjct: 676 LPPAGPQPGPDDAADEDPNDGN 741
>LOC_Os04g12980:12004.t01119:unspliced-genomic indole-3-acetate beta-glucosyltransferase, putative, expressed| Length = 2659 Score = 30.4 bits (60), Expect = 9.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 / +2 Query: 321 SWRRPTASETSSQLSYSCPDTSERNWSGR* 232 SWRR AS T + +C +NWS R* Sbjct: 665 SWRRCWASSTGWRTPTTCSSILSKNWSRR* 754
>LOC_Os02g56360:12002.t05209:unspliced-genomic expressed protein| Length = 3970 Score = 30.4 bits (60), Expect = 9.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +2 / -1 Query: 278 DNCEEVSDAVGRLQLQPVASSKTFQTLSFLFTCQQWR 388 D EE+ ++G L + P + + +S L+ CQ WR Sbjct: 493 DGDEELKISLGGLLVSPPPRACDYGDMSLLYCCQGWR 383
>LOC_Os01g41400:12001.t03660:unspliced-genomic amino acid permease, putative, expressed| Length = 1889 Score = 30.4 bits (60), Expect = 9.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = -2 / +2 Query: 348 KVFDDATGCSWRRPTASETSSQLSYSCPDTSERNWSGR 235 K + CSWR P++S + +C TS R S R Sbjct: 488 KCMGSSCSCSWRLPSSSRRRGSRT*ACLPTSRRLGSSR 601
>LOC_Os01g32720:12001.t02844:unspliced-genomic expressed protein| Length = 11192 Score = 30.4 bits (60), Expect = 9.9 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 / +2 Query: 436 LTKRLRHKIKYFHC*NSPLLAC 371 LT + +H I ++HC N L+AC Sbjct: 401 LTNKYQHNIVWYHCININLMAC 466
>LOC_Os01g31580:12001.t02740:unspliced-genomic expressed protein| Length = 8679 Score = 30.4 bits (60), Expect = 9.9 Identities = 14/60 (23%), Positives = 28/60 (46%) Frame = +2 / +3 Query: 44 GFRVLRTSESARGSHGHLPRASPVPGAREAKDDDE*DGNQADECVLGQMHHRHPRKQVQL 223 G + E + GH+ S + DD + D ++ D+ ++ +M H P+K+V + Sbjct: 654 GASIREEDEVEDDADGHIRTESEDDDDDDEDDDSDDDHHEHDDVLVEEMVHGQPQKRVMM 833 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 195,238,981 Number of extensions: 2859053 Number of successful extensions: 13316 Number of sequences better than 10.0: 56 Length of query: 180 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 132 Effective length of database: 52,912,542 Effective search space: 6984455544 Effective search space used: 6984455544 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
