ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf67e17 |
|---|---|
| Clone Library Name | barley_pub |
>Q12252:PHM7_YEAST Phosphate metabolism protein 7 - Saccharomyces cerevisiae (Baker's| yeast) Length = 991 Score = 49.7 bits (117), Expect = 3e-05 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Frame = +2 Query: 2 AAFVFFKTRYAAL----IVSKILQTSNPMKWVTSLAPERNDMYWSNLWLPYKQLWIRRIA 169 A F+ F+T+ A V IL N K + +PE D+ W ++ L K+ RR Sbjct: 329 ACFIQFETQLEAQRCYQSVEAILGKKNFGKRLIGYSPE--DVNWGSMRLSSKERHSRRAV 386 Query: 170 TLLGSVVFMFIFLVPVTFIQGLTQLEQLQQRLPFLKGLLK-GKIMTQLVTGYLPSVILQI 346 V+ + + PV + ++ + L ++PFL+ + + ++TG LP++ L + Sbjct: 387 ANTIMVLLIIFWAFPVAVVGIISNVNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVV 446 Query: 347 FLYTVPPTMMLFATLEGPISHSE 415 + VPP +++ L G ++ E Sbjct: 447 LMSLVPPFIVMLGKLSGCVTRQE 469
>Q06538:YL241_YEAST Uncharacterized membrane protein YLR241W - Saccharomyces cerevisiae| (Baker's yeast) Length = 782 Score = 47.8 bits (112), Expect = 1e-04 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Frame = +2 Query: 80 WVTSLAPERNDMYWSNLWLPYKQLWIRRIATLLGSVVFMFIFLVPVTFIQGLTQLEQLQQ 259 ++T LAP +D+ W ++ L K + +T + + ++PV+++ L L+ L + Sbjct: 409 FITRLAPAPHDIKWDHVCLSRKDRLTKVYSTTVFIGLSSLFLVIPVSYLATLLNLKTLSK 468 Query: 260 RLPFLKGLLKG-KIMTQLVTGYLPSVILQIFLYTVPPTMMLFATLEGPISHSERKKSACC 436 P + LLK + +VTG LP+ + + + +P + +G +S+SE + S Sbjct: 469 FWPSVGQLLKDHQWAANIVTGLLPTYLFTLLNFGIPYFYEYLTSYQGLVSYSEEEISLVS 528 Query: 437 K 439 K Sbjct: 529 K 529
>Q09766:YA7D_SCHPO Uncharacterized membrane protein C24H6.13 - Schizosaccharomyces| pombe (Fission yeast) Length = 871 Score = 46.6 bits (109), Expect = 3e-04 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 20 KTRYAALIVSKILQTSNPMKWVTSLAPERNDMYWSNLWLP-YKQLWIRRIATLLGSVVFM 196 +T Y A + SK + + + +APE D+ WSNL L Y + + I+ + +++ + Sbjct: 330 QTAYQAFLYSKKFRKYRFGRALVGIAPE--DIVWSNLDLSMYTRRGKKTISNTILTLMII 387 Query: 197 FIFLVPVTFIQGLTQLEQLQQRLPFLKGL--LKGKIMTQLVTGYLPSVILQIFLYTVPPT 370 F + PV + ++ + L +++ FLK + + K++ ++TG LPSV L I + VPP Sbjct: 388 F-WAFPVAVVGCISNVNYLIEKVHFLKFIDHMPPKLLG-IITGILPSVALSILMSLVPPF 445 Query: 371 MMLFATLEGPISHSE 415 + G ++ E Sbjct: 446 IKFLGKFGGALTVQE 460 Score = 32.3 bits (72), Expect = 5.6 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 5/193 (2%) Frame = +3 Query: 462 LARAIPLQATFFTTYVLTSGWASLSSEVMQLFGLIWNFVRKYIL----RMKEDSDCILSF 629 LA +P + F+ +Y L G + ++Q+ L+ + V I R K + LS Sbjct: 505 LASNLPKASNFYISYFLLQGLSIPGGALLQIVTLLLSKVLGRIFDNTPRKKWNRWNQLSA 564 Query: 630 P-YHTELPKVLLFGLLGFTCSVXXXXXXXXXXXXXXXXXXVYRNQFINVYCTRYDTGGLY 806 P + T P L + S+ Y I V D G Sbjct: 565 PSWGTVYPVYSLLVTIMICYSIIAPIIIGFAAVAFVLIYFAYSYNLIYVLGHNADAKGRN 624 Query: 807 WPIAYNATIFSLVLTQIICLGVFGLKESPVAAGFTVPLIILTLLFNQYCRMRLLPLFGTF 986 +P A L L ++ +G+F L ++ A + T+ + Y + + LPL Sbjct: 625 YPRALFQVFVGLYLAEVCLIGLFVLAKNWGATVLEAVFLGFTVACHLYFKYKFLPLMDAV 684 Query: 987 PAQVLIDMDREDE 1025 P + + E Sbjct: 685 PISAIESVSERPE 697
>Q03516:RSN1_YEAST Uncharacterized protein RSN1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 953 Score = 46.2 bits (108), Expect = 4e-04 Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 5/207 (2%) Frame = +3 Query: 462 LARAIPLQATFFTTYVLTSGWASLSSEVMQLFGLIWNFVRKYIL----RMKEDSDCILS- 626 LA +P + FF +YV+ G + S ++Q+ LI +V L R K + C LS Sbjct: 518 LASNLPKASNFFMSYVILQGLSISSGALLQIVPLILFYVLGAFLDGTVRKKWNRFCGLSS 577 Query: 627 FPYHTELPKVLLFGLLGFTCSVXXXXXXXXXXXXXXXXXXVYRNQFINVYCTRYDTGGLY 806 + T P ++ F+ S+ Y VY D G+Y Sbjct: 578 MQWGTAFPVYTNLAVITFSYSIISPLILLFAAVAFFLLYIAYLYNLTYVYQESPDARGIY 637 Query: 807 WPIAYNATIFSLVLTQIICLGVFGLKESPVAAGFTVPLIILTLLFNQYCRMRLLPLFGTF 986 +P A TI + + QI LG+F + + V I +T+L + + L Sbjct: 638 YPRALFQTIVGIYIGQICLLGLFAVGKGWGPIVLQVIGICVTVLIHLHLSAAFDHLSKVI 697 Query: 987 PAQVLIDMDREDEQSGRMEEIHEGLHS 1067 P + +D + + + I++G+ S Sbjct: 698 PVDTMKPLDGVSD-TPSFKNIYKGIES 723
>Q09809:YAB9_SCHPO Uncharacterized membrane protein C2G11.09 - Schizosaccharomyces| pombe (Fission yeast) Length = 796 Score = 44.7 bits (104), Expect = 0.001 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%) Frame = +2 Query: 5 AFVFFKTRYAALIVSKI-LQTSNPMKWVTSLAPERNDMYWSNL----WLPYKQLWIRRIA 169 AF+ F++ A IV++ + + + M LAP ND+ W N W + Q W + Sbjct: 390 AFITFESMATAQIVAQTHIDSKSLMGLHIELAPAANDIQWHNTYIGRWHKFFQGWFITLV 449 Query: 170 TLLGSVVFMFIFLVPVTFIQGLTQLEQLQQRLPFLKGLLKG-KIMTQLVTGYLPSVILQI 346 T + + ++ VPV I L+ +++ P L +++ + L+ +LP+++ + Sbjct: 450 TFM----IILLWTVPVGAIAVFINLDTIRRLWPELGRMIEDLPFLNSLLRTFLPTLVYSL 505 Query: 347 FLYTVPPTMMLFATLEGPISHSERK 421 F+ P ++++G S +E + Sbjct: 506 FISISPFLFRWLSSMQGLSSRAEEE 530
>Q8CBX0:TM63C_MOUSE Transmembrane protein 63C - Mus musculus (Mouse)| Length = 802 Score = 41.2 bits (95), Expect = 0.012 Identities = 30/113 (26%), Positives = 50/113 (44%) Frame = +2 Query: 80 WVTSLAPERNDMYWSNLWLPYKQLWIRRIATLLGSVVFMFIFLVPVTFIQGLTQLEQLQQ 259 W + AP D+ W +L + W R IA + + F+F FL I + + + Sbjct: 381 WRVAHAPHPKDIIWKHLSIRRFSWWTRFIA-INTFLFFLFFFLTTPAIIINTIDIYNVTR 439 Query: 260 RLPFLKGLLKGKIMTQLVTGYLPSVILQIFLYTVPPTMMLFATLEGPISHSER 418 + K+ + +VT + PSV+L F T+P + L A LE + S + Sbjct: 440 PIE--------KLQSPIVTQFFPSVLLWAFTVTMPLLVYLSAFLEAHWTRSSQ 484
>Q07798:SPO75_YEAST Sporulation-specific protein 75 - Saccharomyces cerevisiae (Baker's| yeast) Length = 868 Score = 38.9 bits (89), Expect = 0.060 Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Frame = +2 Query: 8 FVFFKTRYAALIVSKILQTSNPMKWV-TSLAPERNDMYWSNLWLPYKQLWIRRIATLLGS 184 F+ FK+ + ++ ++L P + + + P ND+ W N+ L LW + + Sbjct: 421 FITFKSTLLSNVIGELLSYRLPTQNLKVIIGPNVNDIIWRNI-LDSSPLW-KSAKYFSAN 478 Query: 185 VVFMFI---FLVPVTFIQGLTQLEQLQQRLPFLKGL-LKGKIMTQLVTGYLPSVILQIFL 352 ++ +F+ +++PV F+ ++Q+ + +PF K + + + ++ +P V L I + Sbjct: 479 ILRIFVIIGWILPVAFLGLISQIPNISSLIPFTKIIHFQSPFIREVAKNLIPIVTLIIII 538 Query: 353 YTVPPTMMLFATLEG 397 VP + L G Sbjct: 539 EIVPYFFRWLSYLRG 553
>Q9P1W3:TM63C_HUMAN Transmembrane protein 63C - Homo sapiens (Human)| Length = 806 Score = 37.0 bits (84), Expect = 0.23 Identities = 26/113 (23%), Positives = 47/113 (41%) Frame = +2 Query: 80 WVTSLAPERNDMYWSNLWLPYKQLWIRRIATLLGSVVFMFIFLVPVTFIQGLTQLEQLQQ 259 W ++AP D+ W +L + + W R + + F+F FL I + + + Sbjct: 383 WRVTMAPHPKDIIWKHLSV-RRFFWWARFIAINTFLFFLFFFLTTPAIIMNTIDMYNVTR 441 Query: 260 RLPFLKGLLKGKIMTQLVTGYLPSVILQIFLYTVPPTMMLFATLEGPISHSER 418 + K+ +VT + PSV+L F +P + A LE + S + Sbjct: 442 PIE--------KLQNPIVTQFFPSVMLWGFTVILPLIVYFSAFLEAHWTRSSQ 486
>Q496Z4:TMC4_RAT Transmembrane channel-like protein 4 - Rattus norvegicus (Rat)| Length = 698 Score = 34.7 bits (78), Expect = 1.1 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +2 Query: 299 MTQLVTGYLPSVILQIFLYTVPPTMMLFATLEGPISHSER 418 + +L+ YLPS+ + +F + +PP A+LEG +HS + Sbjct: 373 LLKLLVNYLPSIFISVFNFVLPPAFTFIASLEG-YTHSRQ 411
>Q5T3F8:TM63B_HUMAN Transmembrane protein 63B - Homo sapiens (Human)| Length = 832 Score = 34.3 bits (77), Expect = 1.5 Identities = 30/131 (22%), Positives = 54/131 (41%) Frame = +2 Query: 47 SKILQTSNPMKWVTSLAPERNDMYWSNLWLPYKQLWIRRIATLLGSVVFMFIFLVPVTFI 226 S+ L SN W S AP+ ++YW +L + W+R + + + +F P I Sbjct: 399 SESLHISN---WTVSYAPDPQNIYWEHLSIRGFIWWLRCLVINVVLFILLFFLTTPAIII 455 Query: 227 QGLTQLEQLQQRLPFLKGLLKGKIMTQLVTGYLPSVILQIFLYTVPPTMMLFATLEGPIS 406 T +++ P L I+TQ + P+++L F +P + A E + Sbjct: 456 ---TTMDKFNVTKPV--EYLNNPIITQ----FFPTLLLWCFSALLPTIVYYSAFFEAHWT 506 Query: 407 HSERKKSACCK 439 S ++ K Sbjct: 507 RSGENRTTMHK 517
>Q2S3T5:SYC_SALRD Cysteinyl-tRNA synthetase - Salinibacter ruber (strain DSM 13855)| Length = 516 Score = 33.9 bits (76), Expect = 1.9 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = +3 Query: 990 AQVLIDMDREDEQSGRMEEIHEGLHSAYCQSTDTESADDISLERVPAISTTD 1145 A + D D DE GR+ I++ A C +T +A +L+ V AI TD Sbjct: 365 AALAADADGPDELGGRLRPIYDRTLEAMCDDLNTPAATAAALDGVKAIEQTD 416
>Q7TQ65:TMC4_MOUSE Transmembrane channel-like protein 4 - Mus musculus (Mouse)| Length = 694 Score = 33.5 bits (75), Expect = 2.5 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +2 Query: 281 LLKGKIMTQLVTGYLPSVILQIFLYTVPPTMMLFATLEG 397 L++ + +L+ YLPS+ + +F + +PP A+LEG Sbjct: 363 LVRQTPLFKLLVDYLPSIFISLFNFVLPPVFKFIASLEG 401
>Q3TWI9:TM63B_MOUSE Transmembrane protein 63B - Mus musculus (Mouse)| Length = 832 Score = 33.5 bits (75), Expect = 2.5 Identities = 29/131 (22%), Positives = 54/131 (41%) Frame = +2 Query: 47 SKILQTSNPMKWVTSLAPERNDMYWSNLWLPYKQLWIRRIATLLGSVVFMFIFLVPVTFI 226 S+ L SN W + AP+ ++YW +L + W+R + + + +F P I Sbjct: 399 SEALHISN---WTVTYAPDPQNIYWEHLSIRGFIWWLRCLVINVVLFILLFFLTTPAIII 455 Query: 227 QGLTQLEQLQQRLPFLKGLLKGKIMTQLVTGYLPSVILQIFLYTVPPTMMLFATLEGPIS 406 T +++ P L I+TQ + P+++L F +P + A E + Sbjct: 456 ---TTMDKFNVTKPV--EYLNNPIITQ----FFPTLLLWCFSALLPTIVYYSAFFEAHWT 506 Query: 407 HSERKKSACCK 439 S ++ K Sbjct: 507 RSGENRTTMHK 517
>Q1T7B8:CENPO_CHICK Centromere protein O - Gallus gallus (Chicken)| Length = 325 Score = 33.1 bits (74), Expect = 3.3 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 369 VGGTVYKN-ICKITLGRYPVTSWVMIFPFNNPFRKGSLCCS 250 + GT+ +N +C + + Y V+S FPFN G LCCS Sbjct: 237 IDGTLQRNSLCNLLVFNYTVSSNSKTFPFNVRLLYGDLCCS 277
>Q7Z404:TMC4_HUMAN Transmembrane channel-like protein 4 - Homo sapiens (Human)| Length = 706 Score = 31.6 bits (70), Expect = 9.6 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Frame = +2 Query: 146 QLWIRRIATLLGSVVFMFIFLVPVTFIQGLT---QLEQLQQRLPFLKGLLKGKIMTQLVT 316 ++W+ R+ L V + V + G T Q L Q LP LK L Sbjct: 337 RVWLVRVLLNLLVVALLGAAFYGVYWATGCTVELQEMPLVQELPLLK----------LGV 386 Query: 317 GYLPSVILQIFLYTVPPTMMLFATLEG 397 YLPS+ + + +PP L A LEG Sbjct: 387 NYLPSIFIAGVNFVLPPVFKLIAPLEG 413
>Q9ZHD2:SILC_SALTY Probable outer membrane lipoprotein silC precursor - Salmonella| typhimurium Length = 461 Score = 31.6 bits (70), Expect = 9.6 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 25/82 (30%) Frame = +3 Query: 414 KGRKAPAVKPKDIPMELARAIPLQ----------------------ATFFTTYVLTSGWA 527 KG K + P +P L+ I LQ A FF + LTSG + Sbjct: 257 KGIKGGEIAPVKLPPNLSSQILLQRPDIMEAEYQLKAADANIGAARAAFFPSITLTSGLS 316 Query: 528 SLSSEVMQLF---GLIWNFVRK 584 S S+E+ LF +WNF+ K Sbjct: 317 SSSTELSSLFTSGSGMWNFIPK 338 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 284,843,387 Number of extensions: 6416547 Number of successful extensions: 15959 Number of sequences better than 10.0: 16 Number of HSP's gapped: 15945 Number of HSP's successfully gapped: 17 Length of query: 522 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 404 Effective length of database: 68,319,629 Effective search space: 27601130116 Effective search space used: 27601130116 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
