ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf70g18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P20721:CYSPL_SOLLC Low-temperature-induced cysteine proteinase p... 34 0.83
2Q827G1:GLPK2_STRAW Glycerol kinase 2 - Streptomyces avermitilis 31 5.4
3Q9QYY8:SPAST_MOUSE Spastin - Mus musculus (Mouse) 31 7.1
4Q63003:5E5_RAT 5E5 antigen - Rattus norvegicus (Rat) 26 7.3

>P20721:CYSPL_SOLLC Low-temperature-induced cysteine proteinase precursor - Solanum|
           lycopersicum (Tomato) (Lycopersicon esculentum)
          Length = 346
 Score = 33.9 bits (76), Expect = 0.83
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 183 PPRPTGAPRSPAKPSPDVGGFFSCRVGSPFLAGLCFLRRVLCW 55
           PP+P  +P SP KP  +   +  C VG+     L F R    W
Sbjct: 239 PPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSW 281



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>Q827G1:GLPK2_STRAW Glycerol kinase 2 - Streptomyces avermitilis|
          Length = 507

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = -3

Query: 556 SWKA-ETGKARPRPAGVRKTILVPEGLMTISEMVTQMSSSLLLTPVMLCIRPR-STTAVT 383
           SW+  E   A  + +GVR T L  +G MT + ++ Q  + +L  PV   IRPR S T   
Sbjct: 389 SWQTREVVDAMYQDSGVRITTLKVDGGMTKNNLLMQHQADVLGVPV---IRPRVSETTCL 445

Query: 382 SGAYQTCLPMASKVW 338
             AY   L  A+ VW
Sbjct: 446 GAAYAAGL--ATGVW 458



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>Q9QYY8:SPAST_MOUSE Spastin - Mus musculus (Mouse)|
          Length = 614

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -1

Query: 195 SPCAPPRPTGAPRSPAKPSPDVGG---FFSCRVGSPFLAGLCFLRRVLCWRRSVAAFMC 28
           +P  PP P   P   A P+P  G           SP + G   LR + C    + A++C
Sbjct: 19  APARPPPPAAVPAPAAGPAPAAGSPPKRNPSSFSSPLVVGFALLRLLACHLGLLFAWLC 77



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>Q63003:5E5_RAT 5E5 antigen - Rattus norvegicus (Rat)|
          Length = 825

 Score = 25.8 bits (55), Expect(2) = 7.3
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = -1

Query: 192 PCAPPRPT--GAPRSPAKPSP 136
           P APP P   GAPR P  P P
Sbjct: 157 PRAPPEPPDPGAPRPPPDPGP 177



 Score = 23.5 bits (49), Expect(2) = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 127 GFLLLPGWFSFPCWALFLATRSLLEEIGGC 38
           G L LPG    P + + ++T  LL   GGC
Sbjct: 176 GPLPLPGSQEKPTFVVQVSTEQLLMSTGGC 205


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 127,873,266
Number of extensions: 2665252
Number of successful extensions: 12183
Number of sequences better than 10.0: 4
Number of HSP's gapped: 12136
Number of HSP's successfully gapped: 5
Length of query: 282
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 170
Effective length of database: 69,965,399
Effective search space: 11894117830
Effective search space used: 11894117830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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