ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf67e04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009074.1| Triticum aestivum clone wip1c.pk004.i22:fis, full insert mRNA sequence Length = 1601 Score = 2468 bits (1245), Expect = 0.0 Identities = 1478/1555 (95%), Gaps = 3/1555 (0%) Strand = Plus / Plus Query: 46 cctcgccgcacctgcctctccgccgccggctccaaacctaatgtctgacgcccgcgaggc 105 ||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||| Sbjct: 9 cctcgccgcacctgcctctccgccgccggctccaaactttatgtccaacgctcgcgaggc 68 Query: 106 tgcctcctcctcgccgccgtcggaaagggggcggaggaaggcagtggtggtggtcatggg 165 ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 69 tgcctcctcctcgccgccgtccaaaagggggcggaggaaggcggtggtggtggtcatggg 128 Query: 166 cgcgacgggcgccggcaagtcccggcttgccgttgacctggcgggccactttaccggcgt 225 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 129 cgcgacgggcgccggcaagtcccggcttgccgttgacctggcggggcactttgccggcgt 188 Query: 226 cgaggtggtcagcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaa 285 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 cgaggtggtgagcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaa 248 Query: 286 ggtctccctccatgagcagaacggtgttcctcaccatctccttagcatcgtcgatccttc 345 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct: 249 ggtctccctccatgagcagaacggtgttcctcaccatctcttgagcatcgtcgatccttc 308 Query: 346 cgtggagttcacttgccgcgatttccgtgatcatgccttgcctattatagaagatatatt 405 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 ggcggagttcacttgccgcgatttccgtgatcatgccttgcctattatagaagatatatt 368 Query: 406 ggatcatggcggcctgcctgttattgttggcggcacaaacttctatatacaggctcttgt 465 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 369 ggatcgtggcggcctgcctgttattgttggtggcacaaacttctatatacaggctcttgt 428 Query: 466 tagtccattcctttttgaggatatgtcagaagatatgcagggttgcactttgagtgacca 525 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 429 tagtccattcctctttgaggatatgtcagaagatacgcagggttgcactttgagtgacca 488 Query: 526 acttgatgatataggccttgccacggatgatgttagaagtgggtatgaacacttgaagga 585 ||| |||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||| Sbjct: 489 actcgatgatataggccttgccacagatggtgttggaagtgggtatgaacacttaaagga 548 Query: 586 gattgatcctattgcagcacaaaggatccacccaaacaaccatcgaaaaataaaccgtta 645 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 549 gattgatcctattgcggcacaaaggatccacccaaacaaccaccgaaaaataaaacgtta 608 Query: 646 tcttgagttatatgcaaccacaggtgcactaccaagcgatcttttccaaggagaagctgc 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 609 tcttgagttatatgcaaccacaggtgcactaccaagcgatcttttccaaggagaagctgc 668 Query: 706 agaagacaagtggggccggcctactagttccagatttgactgttgtttcctgtgggtaga 765 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct: 669 agaagacaagtggggccggcctactagctccagatttgactgttgtttcctgtgggtgga 728 Query: 766 tgccgagcttcatgttctggataattatgtcaatgaaagagtcgattgcatgattaatgc 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 729 tgccgagcttcatgttctggataattatgtcaatgaaagagtcgattgcatgattaatgc 788 Query: 826 tggcctgcttgatgaagtgcgcaatatatataatccaggtgccgtttatacccaaggtct 885 ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 789 tgggctgctcgatgaagtgtgcaatatatataatccaggtgccgtttatacccaaggtct 848 Query: 886 gcggcaggccattggggttcgtgaatttgatgagtttttcatatcatattttacaaagaa 945 |||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| Sbjct: 849 acggcaggccattggggttcgtgaatttgatgagttttttagattatattttacaaagaa 908 Query: 946 agaacctaataatgagatgaaagctggtatgcttgatctccatgatgataagctgaaaaa 1005 |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 909 agaacc---tgatgagataaaagctggtatgcttgatctccatgatgataagctgaaaag 965 Query: 1006 cttgttggatgaagctgtctcccagctaaaagcaaacacacgaagacttgttcgacgcca 1065 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 966 cttgttggatgaagctgtctctcagctaaaagcaaacacacgaagacttgttcgacgcca 1025 Query: 1066 aagacggaggctacaccggctgaataaagacttcgggtggcatttgcatcacatcgatgc 1125 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1026 aagacggaggctacaccggctgaataaagacttcgggtggaatttgcatcacatcgatgc 1085 Query: 1126 aacagaagcattccaatgtaccactggtgactcgtggcacgtcaaggttataaaaccttg 1185 ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 1086 aacagaagcattccaatgtaccactggtgactcttggaatgtcaaggttataaaaccttg 1145 Query: 1186 cgtagatactgtcaggagattcttgtctaatgatacaagtttggcaagtaaagattgttc 1245 || |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 1146 cgcagatactgtcagaagattcttgtctaacgatacaactttggcaagtaaagattgttc 1205 Query: 1246 aaatgatggtggagggactaggttggcctcaagagagttatggactcaatatgtttgtga 1305 | |||||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1206 gatcgatggtggtggaactaggttggcctcaagagagttatggactcaatatgtttgcga 1265 Query: 1306 ggcctgcgacaaccggatccttcgaggggcacacgagtgggaacaacacaagcaagggcg 1365 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct: 1266 ggcctgcgacaaccgggtccttcgaggggcacacgagtgggaacaacacaagcaaggccg 1325 Query: 1366 aggccaccggaaaagaacgcagcgcttgaagcggaagagtaagatgaagagtacatcgtc 1425 |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| Sbjct: 1326 aggccaccggaaaagaacacagcatttgaagcggaagagtaagatcaagagtacatcgtc 1385 Query: 1426 tgaagcagaagtataactgtatgagcatcagttttagtttcggtgtagatggaacaccat 1485 ||||||||||||||||| | ||| |||||||| |||||||||||| ||||||||||||| Sbjct: 1386 tgaagcagaagtataaccatgtgaacatcagttgtagtttcggtgttgatggaacaccat 1445 Query: 1486 ttagattggttttgagtcttatggaggagactgtggaaggggattgataagggcacggat 1545 |||||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| Sbjct: 1446 ttagattggtttcgagtcttatggaggagactggggaaggggatcgataaggacacggat 1505 Query: 1546 ccaaacactagttctgatccttaaaggcgtgtttgtatgctgcctgacttcatat 1600 ||||||||||||||||||| ||||||| || ||||||||||||||||||| |||| Sbjct: 1506 ccaaacactagttctgatctttaaaggtgtttttgtatgctgcctgacttgatat 1560
>ref|NM_001052055.1| Oryza sativa (japonica cultivar-group) Os01g0968700 (Os01g0968700) mRNA, complete cds Length = 1697 Score = 365 bits (184), Expect = 3e-97 Identities = 327/374 (87%), Gaps = 3/374 (0%) Strand = Plus / Plus Query: 117 cgccgccgtcggaaagggggcggaggaaggcagtggtggtggtcatgggcgcgacgggcg 176 |||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| |||| Sbjct: 174 cgccgccgccggagaaggggctgaggaagg---tggtggtggtgatgggcgcgactggcg 230 Query: 177 ccggcaagtcccggcttgccgttgacctggcgggccactttaccggcgtcgaggtggtca 236 |||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||||||| Sbjct: 231 ccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtca 290 Query: 237 gcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaaggtctccctcc 296 |||||||||||||||| |||||| | || |||||||||||||| ||||||||| |||||| Sbjct: 291 gcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctcc 350 Query: 297 atgagcagaacggtgttcctcaccatctccttagcatcgtcgatccttccgtggagttca 356 | |||||||| || ||||||||||||||||| ||| | | ||||| || |||||||||| Sbjct: 351 acgagcagaaaggcgttcctcaccatctcctgagcgtgattgatccctctgtggagttca 410 Query: 357 cttgccgcgatttccgtgatcatgccttgcctattatagaagatatattggatcatggcg 416 |||||||||||||||| || ||||| |||| |||||||||| ||||||||||| ||||| Sbjct: 411 cttgccgcgatttccgcgaccatgctgtgccgattatagaaggtatattggatcgtggcg 470 Query: 417 gcctgcctgttattgttggcggcacaaacttctatatacaggctcttgttagtccattcc 476 |||| |||||||||||||| || ||||||||||| || |||||||||||||| ||||||| Sbjct: 471 gcctccctgttattgttggtggtacaaacttctacatccaggctcttgttagcccattcc 530 Query: 477 tttttgaggatatg 490 | ||||| |||||| Sbjct: 531 tctttgatgatatg 544 Score = 311 bits (157), Expect = 4e-81 Identities = 309/359 (86%), Gaps = 3/359 (0%) Strand = Plus / Plus Query: 568 gtatgaacacttgaaggagattgatcctattgcagcacaaaggatccacccaaacaacca 627 ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 622 gtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaacca 681 Query: 628 tcgaaaaataaaccgttatcttgagttatatgcaaccacaggtgcactaccaagcgatct 687 |||||||||||| || || |||||||| |||| | |||||||||| ||||| || ||||| Sbjct: 682 tcgaaaaataaaacgctaccttgagttgtatgaatccacaggtgccctacctagtgatct 741 Query: 688 tttccaaggagaagctgcagaagacaagtggggccggcctactagttccagatttgactg 747 ||||||||| |||| |||| |||||||| || |||| || |||||||||||||| Sbjct: 742 tttccaagggcaagccacagag---aagtggggtcgacctagtaactccagatttgactg 798 Query: 748 ttgtttcctgtgggtagatgccgagcttcatgttctggataattatgtcaatgaaagagt 807 ||||||| ||||| ||||||| || ||||||||||||||| ||||||||||||||| || Sbjct: 799 ttgtttcttgtggttagatgctgatcttcatgttctggatcgttatgtcaatgaaagggt 858 Query: 808 cgattgcatgattaatgctggcctgcttgatgaagtgcgcaatatatataatccaggtgc 867 ||| ||||||||| ||| ||||||||| ||||||||| | || |||||| ||| || || Sbjct: 859 cgactgcatgattgatgatggcctgctagatgaagtgtgtaacatatatgatcgagaggc 918 Query: 868 cgtttatacccaaggtctgcggcaggccattggggttcgtgaatttgatgagtttttca 926 | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 919 cacttatacccaagggctgcggcaggccattggtgttcgtgaatttgatgagtttttca 977 Score = 200 bits (101), Expect = 1e-47 Identities = 328/401 (81%), Gaps = 2/401 (0%) Strand = Plus / Plus Query: 982 tctccatgatgataagctgaaaaacttgttggatgaagctgtctcccagctaaaagcaaa 1041 ||||||||||||||| ||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct: 1042 tctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaa 1101 Query: 1042 cacacgaagacttgttcgacgccaaagacggaggctacaccggctgaataaagacttcgg 1101 ||| || |||||||||||||| |||||||| ||||| || ||| |||||||| | || | Sbjct: 1102 cactcgcagacttgttcgacgtcaaagacgaaggctgcatcggttgaataaatattttga 1161 Query: 1102 gtggcatttgcatcacatcgatgcaacagaagcattccaatgtaccactggtgactcgtg 1161 |||| | |||| ||| || |||||||||||||| ||| | || |||||| |||||| || Sbjct: 1162 gtggaacttgcgtcatattgatgcaacagaagctttctatggtgccactgctgactcatg 1221 Query: 1162 gcacgtcaaggttataaaaccttgcgtagatactgtcaggaga-ttcttgtctaatgata 1220 | || | || ||| | ||||||||||| |||| ||| | |||| ||||||||| |||||| Sbjct: 1222 gaacatgaaagttgtgaaaccttgcgtggatattgtta-gagatttcttgtctgatgata 1280 Query: 1221 caagtttggcaagtaaagattgttcaaatgatggtggagggactaggttggcctcaagag 1280 ||| ||||||||| | |||| |||| | || |||| | ||||| || | ||||||| Sbjct: 1281 caattttggcaagcagagatggttctagtgtaactggaagccctaggatgtcttcaagag 1340 Query: 1281 agttatggactcaatatgtttgtgaggcctgcgacaaccggatccttcgaggggcacacg 1340 |||| |||||||||||||||||||||||||| || |||||| | ||||| || | || | Sbjct: 1341 agttgtggactcaatatgtttgtgaggcctgtgataaccgggtacttcggggaacgcatg 1400 Query: 1341 agtgggaacaacacaagcaagggcgaggccaccggaaaaga 1381 ||||||| |||||||||||||| ||| ||||||| |||||| Sbjct: 1401 agtgggagcaacacaagcaaggccgatgccaccgtaaaaga 1441
>dbj|AB239806.1| Oryza sativa (japonica cultivar-group) OsIPT9 gene for eukaryotic tRNA isopentenyltransferase, complete cds Length = 1389 Score = 365 bits (184), Expect = 3e-97 Identities = 327/374 (87%), Gaps = 3/374 (0%) Strand = Plus / Plus Query: 117 cgccgccgtcggaaagggggcggaggaaggcagtggtggtggtcatgggcgcgacgggcg 176 |||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| |||| Sbjct: 77 cgccgccgccggagaaggggctgaggaagg---tggtggtggtgatgggcgcgactggcg 133 Query: 177 ccggcaagtcccggcttgccgttgacctggcgggccactttaccggcgtcgaggtggtca 236 |||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||||||| Sbjct: 134 ccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtca 193 Query: 237 gcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaaggtctccctcc 296 |||||||||||||||| |||||| | || |||||||||||||| ||||||||| |||||| Sbjct: 194 gcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctcc 253 Query: 297 atgagcagaacggtgttcctcaccatctccttagcatcgtcgatccttccgtggagttca 356 | |||||||| || ||||||||||||||||| ||| | | ||||| || |||||||||| Sbjct: 254 acgagcagaaaggcgttcctcaccatctcctgagcgtgattgatccctctgtggagttca 313 Query: 357 cttgccgcgatttccgtgatcatgccttgcctattatagaagatatattggatcatggcg 416 |||||||||||||||| || ||||| |||| |||||||||| ||||||||||| ||||| Sbjct: 314 cttgccgcgatttccgcgaccatgctgtgccgattatagaaggtatattggatcgtggcg 373 Query: 417 gcctgcctgttattgttggcggcacaaacttctatatacaggctcttgttagtccattcc 476 |||| |||||||||||||| || ||||||||||| || |||||||||||||| ||||||| Sbjct: 374 gcctccctgttattgttggtggtacaaacttctacatccaggctcttgttagcccattcc 433 Query: 477 tttttgaggatatg 490 | ||||| |||||| Sbjct: 434 tctttgatgatatg 447 Score = 303 bits (153), Expect = 1e-78 Identities = 308/359 (85%), Gaps = 3/359 (0%) Strand = Plus / Plus Query: 568 gtatgaacacttgaaggagattgatcctattgcagcacaaaggatccacccaaacaacca 627 ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 525 gtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaacca 584 Query: 628 tcgaaaaataaaccgttatcttgagttatatgcaaccacaggtgcactaccaagcgatct 687 |||||||||||| || || |||||||| |||| | |||||||||| ||||| || ||||| Sbjct: 585 tcgaaaaataaaacgctaccttgagttgtatgaatccacaggtgccctacctagtgatct 644 Query: 688 tttccaaggagaagctgcagaagacaagtggggccggcctactagttccagatttgactg 747 ||||||||| |||| |||| |||||||| || |||| || |||||||||||||| Sbjct: 645 tttccaagggcaagccacagag---aagtggggtcgacctagtaactccagatttgactg 701 Query: 748 ttgtttcctgtgggtagatgccgagcttcatgttctggataattatgtcaatgaaagagt 807 ||||||| ||||| ||||||| || ||||||||||||||| ||||||||||||||| || Sbjct: 702 ttgtttcttgtggttagatgctgatcttcatgttctggatcgttatgtcaatgaaagggt 761 Query: 808 cgattgcatgattaatgctggcctgcttgatgaagtgcgcaatatatataatccaggtgc 867 ||| ||||||||| ||| ||||||||| ||||||||| | || |||||| ||| || || Sbjct: 762 cgactgcatgattgatgatggcctgctagatgaagtgtgtaacatatatgatcgagaggc 821 Query: 868 cgtttatacccaaggtctgcggcaggccattggggttcgtgaatttgatgagtttttca 926 | |||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 822 cacttatacccaagggctgcggcaggccattggtgttcatgaatttgatgagtttttca 880 Score = 200 bits (101), Expect = 1e-47 Identities = 328/401 (81%), Gaps = 2/401 (0%) Strand = Plus / Plus Query: 982 tctccatgatgataagctgaaaaacttgttggatgaagctgtctcccagctaaaagcaaa 1041 ||||||||||||||| ||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct: 945 tctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaa 1004 Query: 1042 cacacgaagacttgttcgacgccaaagacggaggctacaccggctgaataaagacttcgg 1101 ||| || |||||||||||||| |||||||| ||||| || ||| |||||||| | || | Sbjct: 1005 cactcgcagacttgttcgacgtcaaagacgaaggctgcatcggttgaataaatattttga 1064 Query: 1102 gtggcatttgcatcacatcgatgcaacagaagcattccaatgtaccactggtgactcgtg 1161 |||| | |||| ||| || |||||||||||||| ||| | || |||||| |||||| || Sbjct: 1065 gtggaacttgcgtcatattgatgcaacagaagctttctatggtgccactgctgactcatg 1124 Query: 1162 gcacgtcaaggttataaaaccttgcgtagatactgtcaggaga-ttcttgtctaatgata 1220 | || | || ||| | ||||||||||| |||| ||| | |||| ||||||||| |||||| Sbjct: 1125 gaacatgaaagttgtgaaaccttgcgtggatattgtta-gagatttcttgtctgatgata 1183 Query: 1221 caagtttggcaagtaaagattgttcaaatgatggtggagggactaggttggcctcaagag 1280 ||| ||||||||| | |||| |||| | || |||| | ||||| || | ||||||| Sbjct: 1184 caattttggcaagcagagatggttctagtgtaactggaagccctaggatgtcttcaagag 1243 Query: 1281 agttatggactcaatatgtttgtgaggcctgcgacaaccggatccttcgaggggcacacg 1340 |||| |||||||||||||||||||||||||| || |||||| | ||||| || | || | Sbjct: 1244 agttgtggactcaatatgtttgtgaggcctgtgataaccgggtacttcggggaacgcatg 1303 Query: 1341 agtgggaacaacacaagcaagggcgaggccaccggaaaaga 1381 ||||||| |||||||||||||| ||| ||||||| |||||| Sbjct: 1304 agtgggagcaacacaagcaaggccgatgccaccgtaaaaga 1344
>dbj|AK066574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070D13, full insert sequence Length = 1699 Score = 365 bits (184), Expect = 3e-97 Identities = 327/374 (87%), Gaps = 3/374 (0%) Strand = Plus / Plus Query: 117 cgccgccgtcggaaagggggcggaggaaggcagtggtggtggtcatgggcgcgacgggcg 176 |||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| |||| Sbjct: 176 cgccgccgccggagaaggggctgaggaagg---tggtggtggtgatgggcgcgactggcg 232 Query: 177 ccggcaagtcccggcttgccgttgacctggcgggccactttaccggcgtcgaggtggtca 236 |||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||||||| Sbjct: 233 ccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtca 292 Query: 237 gcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaaggtctccctcc 296 |||||||||||||||| |||||| | || |||||||||||||| ||||||||| |||||| Sbjct: 293 gcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctcc 352 Query: 297 atgagcagaacggtgttcctcaccatctccttagcatcgtcgatccttccgtggagttca 356 | |||||||| || ||||||||||||||||| ||| | | ||||| || |||||||||| Sbjct: 353 acgagcagaaaggcgttcctcaccatctcctgagcgtgattgatccctctgtggagttca 412 Query: 357 cttgccgcgatttccgtgatcatgccttgcctattatagaagatatattggatcatggcg 416 |||||||||||||||| || ||||| |||| |||||||||| ||||||||||| ||||| Sbjct: 413 cttgccgcgatttccgcgaccatgctgtgccgattatagaaggtatattggatcgtggcg 472 Query: 417 gcctgcctgttattgttggcggcacaaacttctatatacaggctcttgttagtccattcc 476 |||| |||||||||||||| || ||||||||||| || |||||||||||||| ||||||| Sbjct: 473 gcctccctgttattgttggtggtacaaacttctacatccaggctcttgttagcccattcc 532 Query: 477 tttttgaggatatg 490 | ||||| |||||| Sbjct: 533 tctttgatgatatg 546 Score = 303 bits (153), Expect = 1e-78 Identities = 308/359 (85%), Gaps = 3/359 (0%) Strand = Plus / Plus Query: 568 gtatgaacacttgaaggagattgatcctattgcagcacaaaggatccacccaaacaacca 627 ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 624 gtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaacca 683 Query: 628 tcgaaaaataaaccgttatcttgagttatatgcaaccacaggtgcactaccaagcgatct 687 |||||||||||| || || |||||||| |||| | |||||||||| ||||| || ||||| Sbjct: 684 tcgaaaaataaaacgctaccttgagttgtatgaatccacaggtgccctacctagtgatct 743 Query: 688 tttccaaggagaagctgcagaagacaagtggggccggcctactagttccagatttgactg 747 ||||||||| |||| |||| |||||||| || |||| || |||||||||||||| Sbjct: 744 tttccaagggcaagccacagag---aagtggggtcgacctagtaactccagatttgactg 800 Query: 748 ttgtttcctgtgggtagatgccgagcttcatgttctggataattatgtcaatgaaagagt 807 ||||||| ||||| ||||||| || ||||||||||||||| ||||||||||||||| || Sbjct: 801 ttgtttcttgtggttagatgctgatcttcatgttctggatcgttatgtcaatgaaagggt 860 Query: 808 cgattgcatgattaatgctggcctgcttgatgaagtgcgcaatatatataatccaggtgc 867 ||| ||||||||| ||| ||||||||| ||||||||| | || |||||| ||| || || Sbjct: 861 cgactgcatgattgatgatggcctgctagatgaagtgtgtaacatatatgatcgagaggc 920 Query: 868 cgtttatacccaaggtctgcggcaggccattggggttcgtgaatttgatgagtttttca 926 | |||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 921 cacttatacccaagggctgcggcaggccattggtgttcatgaatttgatgagtttttca 979 Score = 200 bits (101), Expect = 1e-47 Identities = 328/401 (81%), Gaps = 2/401 (0%) Strand = Plus / Plus Query: 982 tctccatgatgataagctgaaaaacttgttggatgaagctgtctcccagctaaaagcaaa 1041 ||||||||||||||| ||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct: 1044 tctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaa 1103 Query: 1042 cacacgaagacttgttcgacgccaaagacggaggctacaccggctgaataaagacttcgg 1101 ||| || |||||||||||||| |||||||| ||||| || ||| |||||||| | || | Sbjct: 1104 cactcgcagacttgttcgacgtcaaagacgaaggctgcatcggttgaataaatattttga 1163 Query: 1102 gtggcatttgcatcacatcgatgcaacagaagcattccaatgtaccactggtgactcgtg 1161 |||| | |||| ||| || |||||||||||||| ||| | || |||||| |||||| || Sbjct: 1164 gtggaacttgcgtcatattgatgcaacagaagctttctatggtgccactgctgactcatg 1223 Query: 1162 gcacgtcaaggttataaaaccttgcgtagatactgtcaggaga-ttcttgtctaatgata 1220 | || | || ||| | ||||||||||| |||| ||| | |||| ||||||||| |||||| Sbjct: 1224 gaacatgaaagttgtgaaaccttgcgtggatattgtta-gagatttcttgtctgatgata 1282 Query: 1221 caagtttggcaagtaaagattgttcaaatgatggtggagggactaggttggcctcaagag 1280 ||| ||||||||| | |||| |||| | || |||| | ||||| || | ||||||| Sbjct: 1283 caattttggcaagcagagatggttctagtgtaactggaagccctaggatgtcttcaagag 1342 Query: 1281 agttatggactcaatatgtttgtgaggcctgcgacaaccggatccttcgaggggcacacg 1340 |||| |||||||||||||||||||||||||| || |||||| | ||||| || | || | Sbjct: 1343 agttgtggactcaatatgtttgtgaggcctgtgataaccgggtacttcggggaacgcatg 1402 Query: 1341 agtgggaacaacacaagcaagggcgaggccaccggaaaaga 1381 ||||||| |||||||||||||| ||| ||||||| |||||| Sbjct: 1403 agtgggagcaacacaagcaaggccgatgccaccgtaaaaga 1443
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 210 bits (106), Expect = 1e-50 Identities = 187/214 (87%) Strand = Plus / Plus Query: 713 aagtggggccggcctactagttccagatttgactgttgtttcctgtgggtagatgccgag 772 |||||||| || |||| || ||||||||||||||||||||| ||||| ||||||| || Sbjct: 42717390 aagtggggtcgacctagtaactccagatttgactgttgtttcttgtggttagatgctgat 42717449 Query: 773 cttcatgttctggataattatgtcaatgaaagagtcgattgcatgattaatgctggcctg 832 ||||||||||||||| ||||||||||||||| ||||| ||||||||| ||| ||||||| Sbjct: 42717450 cttcatgttctggatcgttatgtcaatgaaagggtcgactgcatgattgatgatggcctg 42717509 Query: 833 cttgatgaagtgcgcaatatatataatccaggtgccgtttatacccaaggtctgcggcag 892 || ||||||||| | || |||||| ||| || ||| |||||||||||| ||||||||| Sbjct: 42717510 ctagatgaagtgtgtaacatatatgatcgagaggccacttatacccaagggctgcggcag 42717569 Query: 893 gccattggggttcgtgaatttgatgagtttttca 926 |||||||| ||||||||||||||||||||||||| Sbjct: 42717570 gccattggtgttcgtgaatttgatgagtttttca 42717603 Score = 190 bits (96), Expect = 1e-44 Identities = 167/190 (87%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 117 cgccgccgtcggaaagggggcggaggaaggcagtggtggtggtcatgggcgcgacgggcg 176 |||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| |||| Sbjct: 42716045 cgccgccgccggagaaggggctgaggaagg---tggtggtggtgatgggcgcgactggcg 42716101 Query: 177 ccggcaagtcccggcttgccgttgacctggcgggccactttaccggcgtcgaggtggtca 236 |||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||||||| Sbjct: 42716102 ccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtca 42716161 Query: 237 gcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaaggtctccctcc 296 |||||||||||||||| |||||| | || |||||||||||||| ||||||||| |||||| Sbjct: 42716162 gcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctcc 42716221 Query: 297 atgagcagaa 306 | |||||||| Sbjct: 42716222 acgagcagaa 42716231 Score = 85.7 bits (43), Expect = 5e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 568 gtatgaacacttgaaggagattgatcctattgcagcacaaaggatccacccaaacaacca 627 ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 42716930 gtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaacca 42716989 Query: 628 tcgaaaa 634 ||||||| Sbjct: 42716990 tcgaaaa 42716996 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Plus Query: 389 attatagaagatatattggatcatggcggcctgcctgttattgttggcggcacaaacttc 448 |||||||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||| Sbjct: 42716545 attatagaaggtatattggatcgtggcggcctccctgttattgttggtggtacaaacttc 42716604 Query: 449 ta 450 || Sbjct: 42716605 ta 42716606 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 982 tctccatgatgataagctgaaaaacttgttggatgaagctgtctcccagctaaaagcaaa 1041 ||||||||||||||| ||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct: 42717668 tctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaa 42717727 Query: 1042 cacacgaagacttgttcgacg 1062 ||| || |||||||||||||| Sbjct: 42717728 cactcgcagacttgttcgacg 42717748 Score = 69.9 bits (35), Expect = 3e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 311 gttcctcaccatctccttagcatcgtcgatccttccgtggagttcacttgccgcgatttc 370 ||||||||||||||||| ||| | | ||||| || |||||||||||||||||||||||| Sbjct: 42716322 gttcctcaccatctcctgagcgtgattgatccctctgtggagttcacttgccgcgatttc 42716381 Query: 371 cgtgatcatgc 381 || || ||||| Sbjct: 42716382 cgcgaccatgc 42716392 Score = 61.9 bits (31), Expect = 7e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 1205 ttcttgtctaatgatacaagtttggcaagtaaagattgttcaaatgatggtggagggact 1264 ||||||||| ||||||||| ||||||||| | |||| |||| | || |||| | || Sbjct: 42718063 ttcttgtctgatgatacaattttggcaagcagagatggttctagtgtaactggaagccct 42718122 Query: 1265 aggttggcctcaagagagttatggactcaatatgtttgtgagg 1307 ||| || | ||||||||||| |||||||||||||||||||||| Sbjct: 42718123 aggatgtcttcaagagagttgtggactcaatatgtttgtgagg 42718165 Score = 52.0 bits (26), Expect = 0.007 Identities = 44/50 (88%) Strand = Plus / Plus Query: 647 cttgagttatatgcaaccacaggtgcactaccaagcgatcttttccaagg 696 |||||||| |||| | |||||||||| ||||| || |||||||||||||| Sbjct: 42717141 cttgagttgtatgaatccacaggtgccctacctagtgatcttttccaagg 42717190 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Plus Query: 1340 gagtgggaacaacacaagcaagggcgaggccaccggaaaaga 1381 |||||||| |||||||||||||| ||| ||||||| |||||| Sbjct: 42718340 gagtgggagcaacacaagcaaggccgatgccaccgtaaaaga 42718381 Score = 46.1 bits (23), Expect = 0.41 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 aggctcttgttagtccattcctttttgaggatatg 490 ||||||||||||| |||||||| ||||| |||||| Sbjct: 42716708 aggctcttgttagcccattcctctttgatgatatg 42716742
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1656_A11 Length = 148887 Score = 210 bits (106), Expect = 1e-50 Identities = 187/214 (87%) Strand = Plus / Plus Query: 713 aagtggggccggcctactagttccagatttgactgttgtttcctgtgggtagatgccgag 772 |||||||| || |||| || ||||||||||||||||||||| ||||| ||||||| || Sbjct: 50155 aagtggggtcgacctagtaactccagatttgactgttgtttcttgtggttagatgctgat 50214 Query: 773 cttcatgttctggataattatgtcaatgaaagagtcgattgcatgattaatgctggcctg 832 ||||||||||||||| ||||||||||||||| ||||| ||||||||| ||| ||||||| Sbjct: 50215 cttcatgttctggatcgttatgtcaatgaaagggtcgactgcatgattgatgatggcctg 50274 Query: 833 cttgatgaagtgcgcaatatatataatccaggtgccgtttatacccaaggtctgcggcag 892 || ||||||||| | || |||||| ||| || ||| |||||||||||| ||||||||| Sbjct: 50275 ctagatgaagtgtgtaacatatatgatcgagaggccacttatacccaagggctgcggcag 50334 Query: 893 gccattggggttcgtgaatttgatgagtttttca 926 |||||||| ||||||||||||||||||||||||| Sbjct: 50335 gccattggtgttcgtgaatttgatgagtttttca 50368 Score = 190 bits (96), Expect = 1e-44 Identities = 167/190 (87%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 117 cgccgccgtcggaaagggggcggaggaaggcagtggtggtggtcatgggcgcgacgggcg 176 |||||||| |||| | ||||| |||||||| |||||||||| ||||||||||| |||| Sbjct: 48810 cgccgccgccggagaaggggctgaggaagg---tggtggtggtgatgggcgcgactggcg 48866 Query: 177 ccggcaagtcccggcttgccgttgacctggcgggccactttaccggcgtcgaggtggtca 236 |||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||||||| Sbjct: 48867 ccggcaagtcgcggctggccgtcgacctcgcgagccacttcgccggcgtcgaggtggtca 48926 Query: 237 gcgccgactccatgcaggtctaccgcggtctcgatgtcctcactaacaaggtctccctcc 296 |||||||||||||||| |||||| | || |||||||||||||| ||||||||| |||||| Sbjct: 48927 gcgccgactccatgcaagtctacggtgggctcgatgtcctcaccaacaaggtccccctcc 48986 Query: 297 atgagcagaa 306 | |||||||| Sbjct: 48987 acgagcagaa 48996 Score = 85.7 bits (43), Expect = 5e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 568 gtatgaacacttgaaggagattgatcctattgcagcacaaaggatccacccaaacaacca 627 ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 49695 gtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaacca 49754 Query: 628 tcgaaaa 634 ||||||| Sbjct: 49755 tcgaaaa 49761 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Plus Query: 389 attatagaagatatattggatcatggcggcctgcctgttattgttggcggcacaaacttc 448 |||||||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||| Sbjct: 49310 attatagaaggtatattggatcgtggcggcctccctgttattgttggtggtacaaacttc 49369 Query: 449 ta 450 || Sbjct: 49370 ta 49371 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 982 tctccatgatgataagctgaaaaacttgttggatgaagctgtctcccagctaaaagcaaa 1041 ||||||||||||||| ||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct: 50433 tctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaa 50492 Query: 1042 cacacgaagacttgttcgacg 1062 ||| || |||||||||||||| Sbjct: 50493 cactcgcagacttgttcgacg 50513 Score = 69.9 bits (35), Expect = 3e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 311 gttcctcaccatctccttagcatcgtcgatccttccgtggagttcacttgccgcgatttc 370 ||||||||||||||||| ||| | | ||||| || |||||||||||||||||||||||| Sbjct: 49087 gttcctcaccatctcctgagcgtgattgatccctctgtggagttcacttgccgcgatttc 49146 Query: 371 cgtgatcatgc 381 || || ||||| Sbjct: 49147 cgcgaccatgc 49157 Score = 61.9 bits (31), Expect = 7e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 1205 ttcttgtctaatgatacaagtttggcaagtaaagattgttcaaatgatggtggagggact 1264 ||||||||| ||||||||| ||||||||| | |||| |||| | || |||| | || Sbjct: 50828 ttcttgtctgatgatacaattttggcaagcagagatggttctagtgtaactggaagccct 50887 Query: 1265 aggttggcctcaagagagttatggactcaatatgtttgtgagg 1307 ||| || | ||||||||||| |||||||||||||||||||||| Sbjct: 50888 aggatgtcttcaagagagttgtggactcaatatgtttgtgagg 50930 Score = 52.0 bits (26), Expect = 0.007 Identities = 44/50 (88%) Strand = Plus / Plus Query: 647 cttgagttatatgcaaccacaggtgcactaccaagcgatcttttccaagg 696 |||||||| |||| | |||||||||| ||||| || |||||||||||||| Sbjct: 49906 cttgagttgtatgaatccacaggtgccctacctagtgatcttttccaagg 49955 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Plus Query: 1340 gagtgggaacaacacaagcaagggcgaggccaccggaaaaga 1381 |||||||| |||||||||||||| ||| ||||||| |||||| Sbjct: 51105 gagtgggagcaacacaagcaaggccgatgccaccgtaaaaga 51146 Score = 46.1 bits (23), Expect = 0.41 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 aggctcttgttagtccattcctttttgaggatatg 490 ||||||||||||| |||||||| ||||| |||||| Sbjct: 49473 aggctcttgttagcccattcctctttgatgatatg 49507
>dbj|AK058395.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A11, full insert sequence Length = 1566 Score = 200 bits (101), Expect = 1e-47 Identities = 328/401 (81%), Gaps = 2/401 (0%) Strand = Plus / Plus Query: 982 tctccatgatgataagctgaaaaacttgttggatgaagctgtctcccagctaaaagcaaa 1041 ||||||||||||||| ||||| ||| ||||||||||| ||||| || ||||||||||| Sbjct: 409 tctccatgatgataacctgaagggcttattggatgaagcagtctcacaactaaaagcaaa 468 Query: 1042 cacacgaagacttgttcgacgccaaagacggaggctacaccggctgaataaagacttcgg 1101 ||| || |||||||||||||| |||||||| ||||| || ||| |||||||| | || | Sbjct: 469 cactcgcagacttgttcgacgtcaaagacgaaggctgcatcggttgaataaatattttga 528 Query: 1102 gtggcatttgcatcacatcgatgcaacagaagcattccaatgtaccactggtgactcgtg 1161 |||| | |||| ||| || |||||||||||||| ||| | || |||||| |||||| || Sbjct: 529 gtggaacttgcgtcatattgatgcaacagaagctttctatagtgccactgctgactcatg 588 Query: 1162 gcacgtcaaggttataaaaccttgcgtagatactgtcaggaga-ttcttgtctaatgata 1220 | || | || ||| | ||||||||||| |||| ||| | |||| ||||||||| |||||| Sbjct: 589 ggacatgaaagttgtgaaaccttgcgtggatattgtta-gagatttcttgtctgatgata 647 Query: 1221 caagtttggcaagtaaagattgttcaaatgatggtggagggactaggttggcctcaagag 1280 ||| ||||||||| | |||| |||| | || |||| | ||||| || | ||||||| Sbjct: 648 caattttggcaagcagagatggttctagtgtaactggaagccctaggatgtcttcaagag 707 Query: 1281 agttatggactcaatatgtttgtgaggcctgcgacaaccggatccttcgaggggcacacg 1340 |||| |||||||||||||||||||||||||| || |||||| | ||||| || | || | Sbjct: 708 agttgtggactcaatatgtttgtgaggcctgtgataaccgggtacttcggggaacgcatg 767 Query: 1341 agtgggaacaacacaagcaagggcgaggccaccggaaaaga 1381 ||||||| |||||||||||||| ||| ||||||| |||||| Sbjct: 768 agtgggagcaacacaagcaaggccgatgccaccgtaaaaga 808 Score = 182 bits (92), Expect = 3e-42 Identities = 158/180 (87%) Strand = Plus / Plus Query: 311 gttcctcaccatctccttagcatcgtcgatccttccgtggagttcacttgccgcgatttc 370 ||||||||||||||||| ||| | | ||||| || |||||||||||||||||||||||| Sbjct: 9 gttcctcaccatctcctgagcgtgattgatccctctgtggagttcacttgccgcgatttc 68 Query: 371 cgtgatcatgccttgcctattatagaagatatattggatcatggcggcctgcctgttatt 430 || || ||||| |||| |||||||||| ||||||||||| ||||||||| ||||||||| Sbjct: 69 cgcgaccatgctgtgccgattatagaaggtatattggatcgtggcggcctccctgttatt 128 Query: 431 gttggcggcacaaacttctatatacaggctcttgttagtccattcctttttgaggatatg 490 ||||| || ||||||||||| || |||||||||||||| |||||||| ||||| |||||| Sbjct: 129 gttggtggtacaaacttctacatccaggctcttgttagcccattcctctttgatgatatg 188 Score = 137 bits (69), Expect = 1e-28 Identities = 114/129 (88%) Strand = Plus / Plus Query: 568 gtatgaacacttgaaggagattgatcctattgcagcacaaaggatccacccaaacaacca 627 ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||| |||||||| Sbjct: 266 gtatgaacatttgaagaagattgatcctgttgctgcacaaaggatacacccgaacaacca 325 Query: 628 tcgaaaaataaaccgttatcttgagttatatgcaaccacaggtgcactaccaagcgatct 687 |||||||||||| || || |||||||| |||| | |||||||||| ||||| || ||||| Sbjct: 326 tcgaaaaataaaacgctaccttgagttgtatgaatccacaggtgccctacctagtgatct 385 Query: 688 tttccaagg 696 ||||||||| Sbjct: 386 tttccaagg 394
>dbj|AB263748.2| Ipomoea trifida DNA, self-incompatibility (S-) locus, haplotype:S1 Length = 309228 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 418 cctgcctgttattgttggcggcacaaacttctatatacaggctcttgttagtccattcct 477 ||||||||| |||||||| || ||||| | |||||| ||| ||||||||||||||||||| Sbjct: 279056 cctgcctgtcattgttggtggaacaaattactatattcagtctcttgttagtccattcct 278997 Query: 478 t 478 | Sbjct: 278996 t 278996 Score = 46.1 bits (23), Expect = 0.41 Identities = 38/43 (88%) Strand = Plus / Minus Query: 801 aaagagtcgattgcatgattaatgctggcctgcttgatgaagt 843 |||| |||||| ||||||| | |||||||||||||||||||| Sbjct: 277620 aaagggtcgataacatgattgaagctggcctgcttgatgaagt 277578
>gb|AY448016.1|AY448010S7 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig SR7 Length = 55205 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 418 cctgcctgttattgttggcggcacaaacttctatatacaggctcttgttagtccattcct 477 ||||||||| |||||||| || ||||| | |||||| ||| ||||||||||||||||||| Sbjct: 25033 cctgcctgtcattgttggtggaacaaattactatattcagtctcttgttagtccattcct 24974 Query: 478 t 478 | Sbjct: 24973 t 24973 Score = 46.1 bits (23), Expect = 0.41 Identities = 38/43 (88%) Strand = Plus / Minus Query: 801 aaagagtcgattgcatgattaatgctggcctgcttgatgaagt 843 |||| |||||| ||||||| | |||||||||||||||||||| Sbjct: 23597 aaagggtcgataacatgattgaagctggcctgcttgatgaagt 23555
>ref|XM_001054252.1| PREDICTED: Rattus norvegicus tRNA isopentenyltransferase 1 (predicted) (Trit1_predicted), mRNA Length = 2581 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 655 cggcggcgagatcgtcagcgccgactccatgcaggtcta 693
>ref|XM_342905.3| PREDICTED: Rattus norvegicus tRNA isopentenyltransferase 1 (predicted) (Trit1_predicted), mRNA Length = 2581 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 655 cggcggcgagatcgtcagcgccgactccatgcaggtcta 693
>gb|BC019812.1| Mus musculus tRNA isopentenyltransferase 1, mRNA (cDNA clone MGC:30541 IMAGE:5042856), complete cds Length = 2045 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 123 cggcggcgagatcgtcagcgccgactccatgcaggtcta 161
>gb|BC051040.1| Mus musculus tRNA isopentenyltransferase 1, mRNA (cDNA clone IMAGE:4015446), partial cds Length = 2092 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 130 cggcggcgagatcgtcagcgccgactccatgcaggtcta 168
>dbj|AK128921.1| Mus musculus cDNA fis, clone TRACH2025569, highly similar to Homo sapiens tRNA isopentenyltransferase 1 (IPT) Length = 2060 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 153 cggcggcgagatcgtcagcgccgactccatgcaggtcta 191
>ref|NM_025873.1| Mus musculus tRNA isopentenyltransferase 1 (Trit1), mRNA dbj|AK003556.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110007O17 product:TRNA ISOPENTENYLPYROPHOSPHATE TRANSFERASE homolog [Homo sapiens], full insert sequence Length = 2061 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 155 cggcggcgagatcgtcagcgccgactccatgcaggtcta 193
>dbj|AK010176.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310075G14 product:similar to TRNA ISOPENTENYLPYROPHOSPHATE TRANSFERASE [Homo sapiens], full insert sequence Length = 1951 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtcta 258 ||||| |||| | |||||||||||||||||||||||||| Sbjct: 154 cggcggcgagatcgtcagcgccgactccatgcaggtcta 192
>gb|BT009376.1| Triticum aestivum clone wlm96.pk030.e11:fis, full insert mRNA sequence Length = 1588 Score = 52.0 bits (26), Expect = 0.007 Identities = 109/136 (80%), Gaps = 3/136 (2%) Strand = Plus / Plus Query: 158 gtcatgggcgcgacgggcgccggcaagtcccggcttgccgttgacctggcgggccacttt 217 ||||||||||| |||||| ||||||||||||| || ||| | ||||| ||| || ||| Sbjct: 286 gtcatgggcgccacgggcaccggcaagtcccgcctcgccatcgacctcgcgctccgctt- 344 Query: 218 accggcgtcgaggtggtcagcgccgactccatgcaggtctaccgcggtctcgatgtcctc 277 ||||| ||||||| ||| | ||||| ||||||||||||| || ||||| ||| | Sbjct: 345 --cggcggcgaggtgatcaactccgacaagatgcaggtctaccaaggcctcgacgtcgcc 402 Query: 278 actaacaaggtctccc 293 || ||||||||||||| Sbjct: 403 accaacaaggtctccc 418
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggtctaccg 261 ||||| |||||| |||| |||||||||||||||| ||||||| Sbjct: 38751 cggcggcgaggtcgtcaacgccgactccatgcagctctaccg 38792
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 48.1 bits (24), Expect = 0.10 Identities = 24/24 (100%) Strand = Plus / Plus Query: 218 accggcgtcgaggtggtcagcgcc 241 |||||||||||||||||||||||| Sbjct: 3069180 accggcgtcgaggtggtcagcgcc 3069203
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.10 Identities = 33/36 (91%) Strand = Plus / Minus Query: 226 cgaggtggtcagcgccgactccatgcaggtctaccg 261 |||||| |||| |||||||||||||||| ||||||| Sbjct: 3024435 cgaggtcgtcaacgccgactccatgcagctctaccg 3024400
>emb|AL606906.18| Mouse DNA sequence from clone RP23-121J14 on chromosome 4, complete sequence Length = 198772 Score = 48.1 bits (24), Expect = 0.10 Identities = 33/36 (91%) Strand = Plus / Plus Query: 220 cggcgtcgaggtggtcagcgccgactccatgcaggt 255 ||||| |||| | ||||||||||||||||||||||| Sbjct: 158432 cggcggcgagatcgtcagcgccgactccatgcaggt 158467
>ref|XM_417825.2| PREDICTED: Gallus gallus similar to tRNA isopentenylpyrophosphate transferase (LOC419678), mRNA Length = 2040 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggt 255 ||||||||||||||||||||||| Sbjct: 127 gtcagcgccgactccatgcaggt 149
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Minus Query: 239 gccgactccatgcaggtctaccg 261 ||||||||||||||||||||||| Sbjct: 2192543 gccgactccatgcaggtctaccg 2192521
>ref|XM_532548.2| PREDICTED: Canis familiaris similar to tRNA isopentenyltransferase 1, transcript variant 1 (LOC475320), mRNA Length = 1404 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggt 255 ||||||||||||||||||||||| Sbjct: 154 gtcagcgccgactccatgcaggt 176
>ref|XM_851740.1| PREDICTED: Canis familiaris similar to tRNA isopentenyltransferase 1, transcript variant 2 (LOC475320), mRNA Length = 1326 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggt 255 ||||||||||||||||||||||| Sbjct: 154 gtcagcgccgactccatgcaggt 176
>gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome Length = 4990251 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||| ||||||||||||||||||||| Sbjct: 2341015 gtcaacgccgactccatgcaggtcta 2341040
>ref|XM_001171532.1| PREDICTED: Pan troglodytes tRNA isopentenyltransferase 1, transcript variant 1 (TRIT1), mRNA Length = 1624 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 167 gtcagcgctgactccatgcaggtcta 192
>ref|XM_001171636.1| PREDICTED: Pan troglodytes tRNA isopentenyltransferase 1, transcript variant 3 (TRIT1), mRNA Length = 1976 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 167 gtcagcgctgactccatgcaggtcta 192
>ref|XM_001171585.1| PREDICTED: Pan troglodytes tRNA isopentenyltransferase 1, transcript variant 2 (TRIT1), mRNA Length = 2051 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 167 gtcagcgctgactccatgcaggtcta 192
>ref|XM_513347.2| PREDICTED: Pan troglodytes tRNA isopentenyltransferase 1, transcript variant 4 (TRIT1), mRNA Length = 2133 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 171 gtcagcgctgactccatgcaggtcta 196
>dbj|AB181235.2| Streptococcus mitis genes for DexB, AliB-like ORF1, aliB-like ORF2, transcriptional regulator, tyrosine phosphate, chain length regulator, tyrosine kinase, glucosyl-1-phosphate transferase, rhamnosyltransferase, N-acetylgalactosamine transferase, rhamnosyltransferase, N-acetylgalactosamine transferase, galactosyltransferase, polysaccharide polymerase, repeat unit transporter, galactofuranose mutase, galactofuranose transferase, glucose-1-phosphate thymidylyltransferase, dTDP-4-keto-6-deoxyglucose-3,5-epimerase, dTDP-glucose-4,6-dehydratase, dTDP-rhamnose synthase, AliA, complete cds Length = 27383 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1192 tactgtcaggagattcttgtct 1213 |||||||||||||||||||||| Sbjct: 640 tactgtcaggagattcttgtct 619
>ref|NM_001011306.1| Xenopus tropicalis tRNA isopentenyltransferase 1 (trit1), mRNA gb|BC088030.1| Xenopus tropicalis tRNA isopentenyltransferase 1, mRNA (cDNA clone MGC:108285 IMAGE:7021048), complete cds Length = 1689 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctac 259 ||||||| |||||||||||||||||| Sbjct: 122 tcagcgcagactccatgcaggtctac 147
>gb|AY702940.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 4 (TRIT1) mRNA, complete cds Length = 1114 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702939.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 4 (TRIT1) mRNA, complete cds Length = 1223 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702938.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 4 (TRIT1) mRNA, complete cds Length = 1227 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702937.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 4 (TRIT1) mRNA, complete cds Length = 1227 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702936.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 4 (TRIT1) mRNA, complete cds Length = 1231 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702935.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 3 (TRIT1) mRNA, complete cds Length = 1224 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702934.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 2 (TRIT1) mRNA, complete cds Length = 1373 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AY702933.1| Homo sapiens tRNA isopentenylpyrophosphate transferase isoform 1 (TRIT1) mRNA, complete cds Length = 1377 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 97 gtcagcgctgactccatgcaggtcta 122
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence Length = 117358 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 909 aatttgatgagtttttcatatcatat 934 ||||||| |||||||||||||||||| Sbjct: 66776 aatttgaagagtttttcatatcatat 66751
>ref|NM_017646.3| Homo sapiens tRNA isopentenyltransferase 1 (TRIT1), mRNA gb|AY303390.1| Homo sapiens tRNA isopentenyl transferase (MOD5) mRNA, complete cds; nuclear gene for mitochondrial product Length = 2129 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 168 gtcagcgctgactccatgcaggtcta 193
>dbj|AK223478.1| Homo sapiens mRNA for tRNA isopentenyltransferase 1 variant, clone: FCC118E02 Length = 2159 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 167 gtcagcgctgactccatgcaggtcta 192
>gb|AY052768.1| Homo sapiens tRNA isopentenyl transferase mRNA, partial cds Length = 1308 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 136 gtcagcgctgactccatgcaggtcta 161
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 162 tgggcgcgacgggcgccggcaagtcc 187 |||||||||||||| ||||||||||| Sbjct: 274955 tgggcgcgacgggctccggcaagtcc 274930
>gb|AF074918.1|AF074918 Homo sapiens tRNA isopentenylpyrophosphate transferase precursor RNA, complete cds Length = 2216 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 168 gtcagcgctgactccatgcaggtcta 193
>emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in linkage group 7, complete sequence Length = 192070 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1102 gtggcatttgcatcacatcgat 1123 |||||||||||||||||||||| Sbjct: 20027 gtggcatttgcatcacatcgat 20048
>emb|CR614254.1| full-length cDNA clone CS0DI070YB08 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2058 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 148 gtcagcgctgactccatgcaggtcta 173
>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8, complete sequence Length = 209195 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1102 gtggcatttgcatcacatcgat 1123 |||||||||||||||||||||| Sbjct: 114130 gtggcatttgcatcacatcgat 114151
>emb|CR926281.2| Xenopus tropicalis finished cDNA, clone TEgg033m02 Length = 2462 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctac 259 ||||||| |||||||||||||||||| Sbjct: 78 tcagcgcagactccatgcaggtctac 103
>gb|BC107569.1| Homo sapiens tRNA isopentenyltransferase 1, mRNA (cDNA clone MGC:104350 IMAGE:4594069), complete cds Length = 2144 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 233 gtcagcgccgactccatgcaggtcta 258 |||||||| ||||||||||||||||| Sbjct: 173 gtcagcgctgactccatgcaggtcta 198
>ref|NM_001068743.1| Oryza sativa (japonica cultivar-group) Os08g0510700 (Os08g0510700) mRNA, complete cds Length = 2518 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 472 cctcctcctcgccgccgtcgg 452
>ref|NM_001065186.1| Oryza sativa (japonica cultivar-group) Os06g0729800 (Os06g0729800) mRNA, complete cds Length = 1392 Score = 42.1 bits (21), Expect = 6.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctaccgcggtctcga 270 |||||||||||||| | ||||||||||| || ||||| Sbjct: 299 tcagcgccgactccgtccaggtctaccggggcctcga 335
>ref|NM_001061828.1| Oryza sativa (japonica cultivar-group) Os05g0356700 (Os05g0356700) mRNA, complete cds Length = 1550 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 tgcctcctcctcgccgccgtc 126 ||||||||||||||||||||| Sbjct: 594 tgcctcctcctcgccgccgtc 614
>ref|NM_001054099.1| Oryza sativa (japonica cultivar-group) Os02g0644200 (Os02g0644200) mRNA, partial cds Length = 611 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 105 cctcctcctcgccgccgtcgg 85
>ref|XM_516332.2| PREDICTED: Pan troglodytes DNA topoisomerase II, beta isozyme (TOP2B), mRNA Length = 5307 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 2377 atgcttgttctccatgatgataagc 2353
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1449 agcatcagttttagtttcggt 1469 ||||||||||||||||||||| Sbjct: 9762954 agcatcagttttagtttcggt 9762934
>ref|XM_001092092.1| PREDICTED: Macaca mulatta DNA topoisomerase II beta (TOP2B), mRNA Length = 5478 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 2537 atgcttgttctccatgatgataagc 2513
>ref|NM_001068.2| Homo sapiens topoisomerase (DNA) II beta 180kDa (TOP2B), mRNA Length = 5189 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 2338 atgcttgttctccatgatgataagc 2314
>ref|NM_128335.1| Arabidopsis thaliana ATIPT2 (TRNA ISOPENTENYLTRANSFERASE) (ATIPT2) mRNA, complete cds Length = 1622 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1284 tatggactcaatatgtttgtgaggc 1308 ||||||||||||||||||| ||||| Sbjct: 1300 tatggactcaatatgtttgcgaggc 1324
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 tgcctcctcctcgccgccgtc 126 ||||||||||||||||||||| Sbjct: 87100 tgcctcctcctcgccgccgtc 87080
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 cgacgggcgccggcaagtccc 188 ||||||||||||||||||||| Sbjct: 3035679 cgacgggcgccggcaagtccc 3035659
>gb|AF252832.4| Homo sapiens chromosome 8 clone CTD-2017E4 map cen, complete sequence Length = 139288 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1491 ttggttttgagtcttatggaggaga 1515 |||||||||||||| |||||||||| Sbjct: 96892 ttggttttgagtctgatggaggaga 96916
>ref|XM_534241.2| PREDICTED: Canis familiaris similar to DNA topoisomerase II, beta isozyme (LOC477044), mRNA Length = 6874 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 3607 atgcttgttctccatgatgataagc 3583
>dbj|AB239807.1| Oryza sativa (japonica cultivar-group) OsIPT10 gene for prokaryotic tRNA isopentenyltransferase, complete cds Length = 1254 Score = 42.1 bits (21), Expect = 6.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctaccgcggtctcga 270 |||||||||||||| | ||||||||||| || ||||| Sbjct: 161 tcagcgccgactccgtccaggtctaccggggcctcga 197
>gb|AY080847.1| Arabidopsis thaliana putative tRNA isopentenylpyrophosphate transferase (At2g27760) mRNA, complete cds Length = 1624 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1284 tatggactcaatatgtttgtgaggc 1308 ||||||||||||||||||| ||||| Sbjct: 1286 tatggactcaatatgtttgcgaggc 1310
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1571 ggcgtgtttgtatgctgcctg 1591 ||||||||||||||||||||| Sbjct: 1329048 ggcgtgtttgtatgctgcctg 1329028
>dbj|AK221649.1| Arabidopsis thaliana mRNA for tRNA isopentenyl transferase, complete cds, clone: RAFL09-26-L15 Length = 1618 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1284 tatggactcaatatgtttgtgaggc 1308 ||||||||||||||||||| ||||| Sbjct: 1286 tatggactcaatatgtttgcgaggc 1310
>gb|AF109376.2| Arabidopsis thaliana tRNA isopentenyl transferase mRNA, complete cds Length = 1622 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1284 tatggactcaatatgtttgtgaggc 1308 ||||||||||||||||||| ||||| Sbjct: 1300 tatggactcaatatgtttgcgaggc 1324
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 cgacgggcgccggcaagtccc 188 ||||||||||||||||||||| Sbjct: 179880 cgacgggcgccggcaagtccc 179860
>tpg|BK002542.1| TPA_inf: Drosophila melanogaster HDC13492 (HDC13492) gene, complete cds Length = 2342 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1449 agcatcagttttagtttcggt 1469 ||||||||||||||||||||| Sbjct: 1964 agcatcagttttagtttcggt 1944
>emb|CR731319.2|CNS0GR8C Tetraodon nigroviridis full-length cDNA Length = 1122 Score = 42.1 bits (21), Expect = 6.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctaccgcggtctcga 270 |||||||||| ||||||||||| ||||| || ||||| Sbjct: 155 tcagcgccgattccatgcaggtgtaccgaggcctcga 191
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 25321647 cctcctcctcgccgccgtcgg 25321667
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 6.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctaccgcggtctcga 270 |||||||||||||| | ||||||||||| || ||||| Sbjct: 30585234 tcagcgccgactccgtccaggtctaccggggcctcga 30585270
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 tgcctcctcctcgccgccgtc 126 ||||||||||||||||||||| Sbjct: 16762990 tgcctcctcctcgccgccgtc 16762970
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 25928941 cctcctcctcgccgccgtcgg 25928961
>dbj|AB208879.1| Homo sapiens mRNA for DNA topoisomerase II, beta isozyme variant protein Length = 4814 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 1971 atgcttgttctccatgatgataagc 1947
>emb|Z15115.1|HSTOP2P3 H.sapiens TOP2 mRNA for DNA topoisomerase II (partial) Length = 3432 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 568 atgcttgttctccatgatgataagc 544
>gb|AC008794.8| Homo sapiens chromosome 19 clone CTD-2050I18, complete sequence Length = 131972 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 aggctgcctcctcctcgccgc 122 ||||||||||||||||||||| Sbjct: 118521 aggctgcctcctcctcgccgc 118541
>emb|X68060.1|HSTOPIIB H.sapiens topIIb mRNA for topoisomerase IIb Length = 4866 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 2338 atgcttgttctccatgatgataagc 2314
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 cgacgggcgccggcaagtccc 188 ||||||||||||||||||||| Sbjct: 267708 cgacgggcgccggcaagtccc 267688
>gb|AC007669.6|AC007669 Drosophila melanogaster, chromosome 3R, region 88A-88A, BAC clone BACR25B05, complete sequence Length = 181794 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1449 agcatcagttttagtttcggt 1469 ||||||||||||||||||||| Sbjct: 107933 agcatcagttttagtttcggt 107913
>gb|AC155241.2| Mus musculus BAC clone RP24-485P18 from chromosome 12, complete sequence Length = 144320 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 938 acaaagaaagaacctaataat 958 ||||||||||||||||||||| Sbjct: 2426 acaaagaaagaacctaataat 2446
>emb|CR857392.1| Pongo pygmaeus mRNA; cDNA DKFZp469C0215 (from clone DKFZp469C0215) Length = 5216 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 2353 atgcttgttctccatgatgataagc 2329
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 239 gccgactccatgcaggtctaccgcg 263 ||||| ||||||||||||||||||| Sbjct: 7163012 gccgattccatgcaggtctaccgcg 7162988
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0069C14 Length = 150579 Score = 42.1 bits (21), Expect = 6.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 234 tcagcgccgactccatgcaggtctaccgcggtctcga 270 |||||||||||||| | ||||||||||| || ||||| Sbjct: 83797 tcagcgccgactccgtccaggtctaccggggcctcga 83833
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_H11 Length = 143314 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 80282 cctcctcctcgccgccgtcgg 80302
>gb|AC124290.5| Homo sapiens chromosome 8, clone RP11-89M20, complete sequence Length = 198642 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1491 ttggttttgagtcttatggaggaga 1515 |||||||||||||| |||||||||| Sbjct: 137410 ttggttttgagtctgatggaggaga 137386
>dbj|AB062609.1| Arabidopsis thaliana AtIPT2 mRNA for tRNA isopentenyltransferase, complete cds Length = 1401 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1284 tatggactcaatatgtttgtgaggc 1308 ||||||||||||||||||| ||||| Sbjct: 1238 tatggactcaatatgtttgcgaggc 1262
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 96832 cctcctcctcgccgccgtcgg 96852
>gb|AC124265.7| Homo sapiens chromosome 8, clone CTD-2017E4, complete sequence Length = 139288 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1491 ttggttttgagtcttatggaggaga 1515 |||||||||||||| |||||||||| Sbjct: 96891 ttggttttgagtctgatggaggaga 96915
>dbj|AK111133.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D05, full insert sequence Length = 626 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 105 cctcctcctcgccgccgtcgg 85
>dbj|AK111116.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-B09, full insert sequence Length = 732 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 465 cctcctcctcgccgccgtcgg 445
>dbj|AK101254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F20, full insert sequence Length = 2519 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cctcctcctcgccgccgtcgg 128 ||||||||||||||||||||| Sbjct: 473 cctcctcctcgccgccgtcgg 453
>dbj|AK071031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076I22, full insert sequence Length = 1551 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 tgcctcctcctcgccgccgtc 126 ||||||||||||||||||||| Sbjct: 595 tgcctcctcctcgccgccgtc 615
>gb|AF153718.1|AF153718 Onchocerca volvulus dynein light chain 1 protein DLC-1 (dlc-1) mRNA, partial cds Length = 402 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 gatatgtcagaagatatgcag 505 ||||||||||||||||||||| Sbjct: 9 gatatgtcagaagatatgcag 29
>dbj|AP006252.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-771I6, complete sequence Length = 153493 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1491 ttggttttgagtcttatggaggaga 1515 |||||||||||||| |||||||||| Sbjct: 61233 ttggttttgagtctgatggaggaga 61257
>emb|CT027556.11| Mouse DNA sequence from clone RP23-405M23 on chromosome 12, complete sequence Length = 209313 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 938 acaaagaaagaacctaataat 958 ||||||||||||||||||||| Sbjct: 8866 acaaagaaagaacctaataat 8846
>gb|BT001906.1| Arabidopsis thaliana clone C105249 putative tRNA isopentenylpyrophosphate transferase (At2g27760) mRNA, complete cds Length = 1432 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1284 tatggactcaatatgtttgtgaggc 1308 ||||||||||||||||||| ||||| Sbjct: 1238 tatggactcaatatgtttgcgaggc 1262
>gb|AD000002.1|MSGY154 Mycobacterium tuberculosis sequence from clone y154 Length = 40221 Score = 42.1 bits (21), Expect = 6.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cgacgggcgccggcaagtccc 188 ||||||||||||||||||||| Sbjct: 24596 cgacgggcgccggcaagtccc 24616
>gb|M27504.1|HUMTOPIIX Homo sapiens topoisomerase type II (Topo II) mRNA, partial cds Length = 2685 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 974 atgcttgatctccatgatgataagc 998 ||||||| ||||||||||||||||| Sbjct: 1909 atgcttgttctccatgatgataagc 1885
>dbj|AP000082.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 18/19 Length = 100000 Score = 42.1 bits (21), Expect = 6.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1491 ttggttttgagtcttatggaggaga 1515 |||||||||||||| |||||||||| Sbjct: 89849 ttggttttgagtctgatggaggaga 89825 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 300,396,134 Number of extensions: 15685115 Number of successful extensions: 294022 Number of sequences better than 10.0: 102 Number of HSP's gapped: 294021 Number of HSP's successfully gapped: 137 Length of query: 1660 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1637 Effective length of database: 18,503,978,556 Effective search space: 30291012896172 Effective search space used: 30291012896172 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
