| Clone Name | FLbaf67d21 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g33280:12012.t03020:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 5064 Score = 31.3 bits (62), Expect = 4.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 / -3 Query: 443 PMMTVCGDHNNTY*PKHFPPQQASNKISLGAKQINTFKQ 327 P M +C + N PP+QA++ SLG + N K+ Sbjct: 4324 PQMVICPEPNERQYCTRIPPKQANDTTSLGKRAQNISKR 4208
>LOC_Os11g10280:12011.t00920:unspliced-genomic receptor-like protein kinase, putative| Length = 2472 Score = 31.3 bits (62), Expect = 4.7 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 / -3 Query: 356 PN*FCCWLAAVGNASASMCCCDHHRQSSWVL*EILRKYISCSRK 487 P+ C WLA N + + C C SS+++* + Y SC + Sbjct: 2269 PHEVC*WLAQENNQNDNGCLCMRRINSSFLI*FLAVPYQSCKHQ 2138
>LOC_Os01g27170:12001.t02421:unspliced-genomic potassium transporter 3, putative, expressed| Length = 5286 Score = 31.3 bits (62), Expect = 4.7 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 / +2 Query: 389 GNASASMCCCDHHRQSSWVL*EILRKYISCSR 484 G A+ MCCC R ++W R+ +C+R Sbjct: 1961 GGATTGMCCCWRTRAAAWCTAT*ARRRCTCTR 2056
>LOC_Os04g49860:12004.t04500:unspliced-genomic EMB2411, putative, expressed| Length = 10200 Score = 30.9 bits (61), Expect = 6.4 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 / +2 Query: 258 IVLHVSTRVSANKSTTICHF 317 I+LHV T++ N ST +CHF Sbjct: 1079 ILLHVRTKLPKN*STKLCHF 1138
>LOC_Os03g45980:12003.t03968:unspliced-genomic expressed protein| Length = 2794 Score = 30.9 bits (61), Expect = 6.5 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = -1 / +2 Query: 132 KSTALVGRASAAAHRRRPLKFSL 64 KS +LVG +S+A+ RRPL FSL Sbjct: 2 KSGSLVGSSSSASPLRRPLLFSL 70
>LOC_Os10g28340:12010.t02186:unspliced-genomic heat shock factor protein HSF30, putative, expressed| Length = 4075 Score = 30.4 bits (60), Expect = 8.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +1 / +3 Query: 217 ITFPLNSMLKASEELCCMSRRESLLIKAQP 306 I F ++++L ASE LCC+ R + L++ P Sbjct: 3444 ICFSISALLLASELLCCLLNRSN*LVEI*P 3533
>LOC_Os12g03330:12012.t00226:unspliced-genomic hypothetical protein| Length = 327 Score = 24.9 bits (48), Expect(2) = 9.4 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +2 / -2 Query: 377 LAAVGNASASMCCC 418 +AAVG A+ CCC Sbjct: 209 IAAVGAAALGCCCC 168 Score = 21.7 bits (41), Expect(2) = 9.4 Identities = 6/13 (46%), Positives = 6/13 (46%) Frame = +2 / -3 Query: 410 CCCDHHRQSSWVL 448 CCC H W L Sbjct: 121 CCCRHATSRCWSL 83 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 167,494,013 Number of extensions: 2253394 Number of successful extensions: 9508 Number of sequences better than 10.0: 7 Length of query: 167 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 119 Effective length of database: 52,912,542 Effective search space: 6296592498 Effective search space used: 6296592498 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)