ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf67d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os12g33280:12012.t03020:unspliced-genomic retrotransposo... 31 4.7
2LOC_Os11g10280:12011.t00920:unspliced-genomic receptor-like ... 31 4.7
3LOC_Os01g27170:12001.t02421:unspliced-genomic potassium tran... 31 4.7
4LOC_Os04g49860:12004.t04500:unspliced-genomic EMB2411, putat... 31 6.4
5LOC_Os03g45980:12003.t03968:unspliced-genomic expressed protein 31 6.5
6LOC_Os10g28340:12010.t02186:unspliced-genomic heat shock fac... 30 8.9
7LOC_Os12g03330:12012.t00226:unspliced-genomic hypothetical p... 25 9.4

>LOC_Os12g33280:12012.t03020:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 5064
 Score = 31.3 bits (62), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2 / -3

                                                   
Query: 443  PMMTVCGDHNNTY*PKHFPPQQASNKISLGAKQINTFKQ 327
            P M +C + N        PP+QA++  SLG +  N  K+
Sbjct: 4324 PQMVICPEPNERQYCTRIPPKQANDTTSLGKRAQNISKR 4208



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>LOC_Os11g10280:12011.t00920:unspliced-genomic receptor-like protein kinase, putative|
          Length = 2472

 Score = 31.3 bits (62), Expect = 4.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2 / -3

                                                        
Query: 356  PN*FCCWLAAVGNASASMCCCDHHRQSSWVL*EILRKYISCSRK 487
            P+  C WLA   N + + C C     SS+++* +   Y SC  +
Sbjct: 2269 PHEVC*WLAQENNQNDNGCLCMRRINSSFLI*FLAVPYQSCKHQ 2138



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>LOC_Os01g27170:12001.t02421:unspliced-genomic potassium transporter 3, putative, expressed|
          Length = 5286

 Score = 31.3 bits (62), Expect = 4.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2 / +2

                                            
Query: 389  GNASASMCCCDHHRQSSWVL*EILRKYISCSR 484
            G A+  MCCC   R ++W      R+  +C+R
Sbjct: 1961 GGATTGMCCCWRTRAAAWCTAT*ARRRCTCTR 2056



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>LOC_Os04g49860:12004.t04500:unspliced-genomic EMB2411, putative, expressed|
          Length = 10200

 Score = 30.9 bits (61), Expect = 6.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3 / +2

                                
Query: 258  IVLHVSTRVSANKSTTICHF 317
            I+LHV T++  N ST +CHF
Sbjct: 1079 ILLHVRTKLPKN*STKLCHF 1138



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>LOC_Os03g45980:12003.t03968:unspliced-genomic expressed protein|
          Length = 2794

 Score = 30.9 bits (61), Expect = 6.5
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -1 / +2

                                  
Query: 132 KSTALVGRASAAAHRRRPLKFSL 64
           KS +LVG +S+A+  RRPL FSL
Sbjct: 2   KSGSLVGSSSSASPLRRPLLFSL 70



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>LOC_Os10g28340:12010.t02186:unspliced-genomic heat shock factor protein HSF30, putative, expressed|
          Length = 4075

 Score = 30.4 bits (60), Expect = 8.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1 / +3

                                          
Query: 217  ITFPLNSMLKASEELCCMSRRESLLIKAQP 306
            I F ++++L ASE LCC+  R + L++  P
Sbjct: 3444 ICFSISALLLASELLCCLLNRSN*LVEI*P 3533



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>LOC_Os12g03330:12012.t00226:unspliced-genomic hypothetical protein|
          Length = 327

 Score = 24.9 bits (48), Expect(2) = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2 / -2

                         
Query: 377 LAAVGNASASMCCC 418
           +AAVG A+   CCC
Sbjct: 209 IAAVGAAALGCCCC 168



 Score = 21.7 bits (41), Expect(2) = 9.4
 Identities = 6/13 (46%), Positives = 6/13 (46%)
 Frame = +2 / -3

                        
Query: 410 CCCDHHRQSSWVL 448
           CCC H     W L
Sbjct: 121 CCCRHATSRCWSL 83


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 167,494,013
Number of extensions: 2253394
Number of successful extensions: 9508
Number of sequences better than 10.0: 7
Length of query: 167
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 119
Effective length of database: 52,912,542
Effective search space: 6296592498
Effective search space used: 6296592498
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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