ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf70f19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 470 bits (237), Expect = e-129 Identities = 264/272 (97%), Gaps = 2/272 (0%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 3947 cagttgcaggtacaggtaaaggttacttgacgcgagcgcgttgattgttcttttggagtt 4006 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4007 gcctcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 4066 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4067 caaggatggatgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 4126 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4127 tactcttgatgatgatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 4186 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 |||||||||| |||||||||||||||||||| Sbjct: 4187 gccaactctg--tatatatatctcttcttttc 4216 Score = 79.8 bits (40), Expect = 2e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||||||||| |||| ||||||||| ||||||||||||| |||| | | |||| Sbjct: 2564 agttccgcaagcgtgccggattgtgaggactcgttcgactacgtcggttcgtctgcttca 2623 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||||||||||||| Sbjct: 2624 cggaggcattcttcttccaagcgggatctcag 2655
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 470 bits (237), Expect = e-129 Identities = 264/272 (97%), Gaps = 2/272 (0%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 3947 cagttgcaggtacaggtaaaggttacttgacgcgagcgcgttgattgttcttttggagtt 4006 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4007 gcctcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 4066 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4067 caaggatggatgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 4126 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4127 tactcttgatgatgatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 4186 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 |||||||||| |||||||||||||||||||| Sbjct: 4187 gccaactctg--tatatatatctcttcttttc 4216 Score = 430 bits (217), Expect = e-117 Identities = 261/273 (95%), Gaps = 7/273 (2%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 11487 cagttgcaggtacaggtaaaggttacttgacgcgagcgcgttgattgttcatttggagtt 11546 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11547 gctt---cttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 11603 Query: 874 caaggatggacgtcgttcttcttttg-tcgtttgttttcgtccgtagtcggaccctgctc 932 |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 11604 caaggatggacgtcgttcttatttttctcgtttgttttcgtccgtagtcggaccctgctc 11663 Query: 933 ttactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgta 992 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 11664 ttactcttgatgattatgtaatgtactgatgtgactctgatgtaacttgtggcgagtgta 11723 Query: 993 agccaactctgaatatatatatctcttcttttc 1025 |||||||||| | |||||||||||||||||| Sbjct: 11724 agccaactct---tctatatatctcttcttttc 11753 Score = 141 bits (71), Expect = 6e-30 Identities = 87/91 (95%), Gaps = 1/91 (1%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | Sbjct: 10096 agttccgcaagcgtgtcggaa-gtgaggacccgttcgactacgatggtttgccgactcca 10154 Query: 725 ccgagttgttcttcttccaagcgggatctca 755 ||||||||||||||||||||||||||||||| Sbjct: 10155 ccgagttgttcttcttccaagcgggatctca 10185 Score = 79.8 bits (40), Expect = 2e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||||||||| |||| ||||||||| ||||||||||||| |||| | | |||| Sbjct: 2564 agttccgcaagcgtgccggattgtgaggactcgttcgactacgtcggttcgtctgcttca 2623 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||||||||||||| Sbjct: 2624 cggaggcattcttcttccaagcgggatctcag 2655
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 438 bits (221), Expect = e-119 Identities = 242/249 (97%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||| Sbjct: 103025 cagttgcaggtacaggtaaaggttatttgacgtgagcgcgttgattgttcatttgaagtt 102966 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 102965 gcttcttcttcttcatcatcatcgatctaggatgggttccaggccggcagcctgggatag 102906 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102905 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 102846 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102845 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 102786 Query: 994 gccaactct 1002 ||||||||| Sbjct: 102785 gccaactct 102777 Score = 87.7 bits (44), Expect = 7e-14 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||| ||||| |||| ||||||||||||||||||||||| |||| | | |||| Sbjct: 104430 agttccgca-gcgtgccggattgtgaggacccgttcgactacgtcggttcgtctgcttca 104372 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||||||||||||||||| |||||||||||| Sbjct: 104371 cggagttgttcttcttccaggcgggatctcag 104340
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 438 bits (221), Expect = e-119 Identities = 242/249 (97%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 326913 cagttgcaggtacaggtaaaggttacttgatgcgagcgtgttgattgttcatttggagtt 326972 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 326973 gcttcttctccttcttcatcatcgatctaggatgggttccaggccggcagcctgggatag 327032 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 327033 caaggatggacgtcgttcttcttttctcgtttgttttcgtccgtagtcggaccctgctct 327092 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327093 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 327152 Query: 994 gccaactct 1002 ||||||||| Sbjct: 327153 gccaactct 327161 Score = 387 bits (195), Expect = e-104 Identities = 254/272 (93%), Gaps = 10/272 (3%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||||||||| |||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 131316 cagttgcaggtacatgtaaaggtcacttgacgtgagcgcgttgattgttcatttggagtt 131375 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 131376 gctt---cttcttctccttcatcgatctaggatgggttccagggcggcagcctgggatag 131432 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 131433 caaggatggacgtcgttcttcttttctcgtttgttttcttccgtagtcggaccctgctct 131492 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131493 tactcttgatg---atgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 131549 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 |||||||| |||||||||||||||||||| Sbjct: 131550 gccaactc----tatatatatctcttcttttc 131577 Score = 127 bits (64), Expect = 9e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 |||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct: 325508 agtttcgcaagcgtgtcggaatgtgaggacccgttcgactacgttggttcgtctacttca 325567 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||||||||||||||||||| |||||||||| Sbjct: 325568 cggagttgttcttcttccaagtgggatctcag 325599 Score = 73.8 bits (37), Expect = 1e-09 Identities = 77/89 (86%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 668 tccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttctccg 727 ||||||||||||||||| ||||||||||||||||||||||| |||| | |||| | | Sbjct: 129957 tccgcaagcgtgtcgga-tgtgaggacccgttcgactacgtcggttcgtgtgcttcacgg 130015 Query: 728 agttgttcttcttccaagcgggatctcag 756 || |||||||||||||||||||||||| Sbjct: 130016 agacattcttcttccaagcgggatctcag 130044 Score = 65.9 bits (33), Expect = 3e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 668 tccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttctccg 727 ||||||||||||||||| ||||||||||| ||||||||||| |||| | |||| | | Sbjct: 177290 tccgcaagcgtgtcgga-tgtgaggacccattcgactacgtcggttcgtgttcttcacgg 177348 Query: 728 agttgttcttcttccaagcgggatctcag 756 || |||||||||||||||||||||||| Sbjct: 177349 agacattcttcttccaagcgggatctcag 177377
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 438 bits (221), Expect = e-119 Identities = 260/272 (95%), Gaps = 2/272 (0%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||||||| Sbjct: 10307 cagttgcaggtacatgtaaaggttatttgacacgagcgcattgattgttcatttggagtt 10366 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10367 gcttcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 10426 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10427 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 10486 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 10487 tactcttgatgtttatgtaatgtattgatgtgactctgatgtagcttgtggcgagtgtaa 10546 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 ||||| || |||||||||||||| ||||||| Sbjct: 10547 gccaattc--aatatatatatctcatcttttc 10576
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 438 bits (221), Expect = e-119 Identities = 260/272 (95%), Gaps = 2/272 (0%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||||||| Sbjct: 2750 cagttgcaggtacatgtaaaggttatttgacacgagcgcattgattgttcatttggagtt 2809 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 gcttcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 2869 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2870 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 2929 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2930 tactcttgatgtttatgtaatgtattgatgtgactctgatgtagcttgtggcgagtgtaa 2989 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 ||||| || |||||||||||||| ||||||| Sbjct: 2990 gccaattc--aatatatatatctcatcttttc 3019
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 434 bits (219), Expect = e-118 Identities = 259/272 (95%), Gaps = 4/272 (1%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 10826 cagttgcaggtacaggtaaatggtacttcacgtgagcgcgttgattgttcatttggagtt 10885 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct: 10886 gcttcttcttcttcttcttcatcgatctaggatgggttccaggccggcaccctcggatag 10945 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10946 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 11005 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11006 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 11065 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 ||||||||| |||||||||||||||||| Sbjct: 11066 gccaactctt----tatatatctcttcttttc 11093 Score = 71.9 bits (36), Expect = 4e-09 Identities = 79/92 (85%), Gaps = 1/92 (1%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||| |||||||||||||| ||||||||||||||||||||||| |||| | | |||| Sbjct: 9448 agttctgcaagcgtgtcgga-tgtgaggacccgttcgactacgtcggttcgtctgcttca 9506 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| ||| |||||||||||||||||||| Sbjct: 9507 cggaggcattcctcttccaagcgggatctcag 9538
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 430 bits (217), Expect = e-117 Identities = 241/249 (96%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 16623 cagttgcaggtacaggtaaaggttacttgacgcgagcgcgttgattgttcatttggagtt 16564 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16563 gcttcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 16504 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 16503 caaggatggacgtcgttcttcttttgtcgtttgttttcgtctgtagtcggaccctgctct 16444 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||| ||| |||||||||||||||| | |||||||||||||||| |||||||||||| Sbjct: 16443 tactcttcatgtttatgtaatgtactgaagcgactctgatgtagcttttggcgagtgtaa 16384 Query: 994 gccaactct 1002 ||||||||| Sbjct: 16383 gccaactct 16375 Score = 61.9 bits (31), Expect = 4e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 674 agcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttctccgagttgt 733 |||||| |||| ||||||||||||||||||||||| |||| | | |||| | || | Sbjct: 18000 agcgtgccggattgtgaggacccgttcgactacgtcggttcgtcagcttcacgcaggcat 17941 Query: 734 tcttcttccaagcgggatctcag 756 ||||||||||||||||||||||| Sbjct: 17940 tcttcttccaagcgggatctcag 17918
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 428 bits (216), Expect = e-116 Identities = 261/275 (94%), Gaps = 7/275 (2%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 65096 cagttgcaggtacaggctaagattacttgatgcgagcgtgttgattgttcatttggagtt 65037 Query: 814 gcttgttcttcttcttcttc---atcgatctaggatgggttccaggccggcagcctggga 870 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 65036 gcttcttcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctggga 64977 Query: 871 tagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgc 930 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 64976 tagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagacggaccctgc 64917 Query: 931 tcttactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtg 990 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64916 tcttactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtg 64857 Query: 991 taagccaactctgaatatatatatctcttcttttc 1025 |||||||||||| |||||||||||||||||| Sbjct: 64856 taagccaactctt----tatatatctcttcttttc 64826 Score = 79.8 bits (40), Expect = 2e-11 Identities = 80/92 (86%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 |||||||||||||||||||| ||||||||||||||||||||||| |||| | | |||| Sbjct: 66479 agttccgcaagcgtgtcgga-tgtgaggacccgttcgactacgtcggttcgtctgcttca 66421 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||| ||||||||| Sbjct: 66420 cggaggcattcttcttccaagcaggatctcag 66389
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 416 bits (210), Expect = e-113 Identities = 257/272 (94%), Gaps = 8/272 (2%) Strand = Plus / Plus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 3947 cagttgcaggtacaggtaaaggttacttgacgcgagcgcgttgattgttcttttggagtt 4006 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4007 gcctcttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 4066 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 4067 caaggatggacgtcg------ttttctcgtttgttttcgtccgtagtcggaccctgctct 4120 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4121 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 4180 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 ||||| ||| |||||||||||||||||||| Sbjct: 4181 gccaattct--ttatatatatctcttcttttc 4210 Score = 79.8 bits (40), Expect = 2e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||||||||| |||| ||||||||| ||||||||||||| |||| | | |||| Sbjct: 2564 agttccgcaagcgtgccggattgtgaggactcgttcgactacgtcggttcgtctgcttca 2623 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||||||||||||| Sbjct: 2624 cggaggcattcttcttccaagcgggatctcag 2655
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 414 bits (209), Expect = e-112 Identities = 258/272 (94%), Gaps = 3/272 (1%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| Sbjct: 37532 cagttgcaggtacaggtaaaggttacttgacgcgagcgcgctgattgttcattttgagtt 37473 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37472 gcttcttctcctttttcttcatcgatctaggatgggttccaggccggcagcctgggatag 37413 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 ||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||| Sbjct: 37412 caaggatggacgtcgtt-tcattttctcgtttgttttcgtccgtagtcggaccccgctct 37354 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 37353 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggtgagtgtaa 37294 Query: 994 gccaactctgaatatatatatctcttcttttc 1025 |||||||||| |||||||||||||||||||| Sbjct: 37293 gccaactctg--tatatatatctcttcttttc 37264 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 |||||||||||||||||||| ||||||||||||||||||||||| ||| | | |||| Sbjct: 38927 agttccgcaagcgtgtcggattgtgaggacccgttcgactacgtcagttcgtctgcttca 38868 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||||||||||||| Sbjct: 38867 cggaggcattcttcttccaagcgggatctcag 38836
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 410 bits (207), Expect = e-111 Identities = 239/249 (95%), Gaps = 3/249 (1%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||| Sbjct: 68394 cagttgcaggtacacgtaatggttacttgacgcgagcgctttgattgttcatttggagtt 68335 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68334 gctt---cttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 68278 Query: 874 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68277 caaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctct 68218 Query: 934 tactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaa 993 |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| Sbjct: 68217 tactcttgatgattatgtaatgaacttatgtgactctgatgtagcctgtggcgagtgtaa 68158 Query: 994 gccaactct 1002 ||||||||| Sbjct: 68157 gccaactct 68149 Score = 71.9 bits (36), Expect = 4e-09 Identities = 79/92 (85%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||| ||||| |||| ||||||||||||||||||||||| |||| | | |||| Sbjct: 69778 agttccgca-gcgtgccggattgtgaggacccgttcgactacgtcggttcgtctgcttca 69720 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||||||||||||| Sbjct: 69719 cggaggcattcttcttccaagcgggatctcag 69688
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 394 bits (199), Expect = e-106 Identities = 236/247 (95%), Gaps = 1/247 (0%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 ||||||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||||| Sbjct: 3563 cagttgcaggtacaggtaaaggttattcgacgtgagcgcgttgattgttcatctggagtt 3504 Query: 814 gcttgttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatag 873 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3503 gcttcttcttcttcttcttcttcgatctaggatgggttccaggccggcagcctgggatag 3444 Query: 874 caaggatggacgtcgttcttcttttgtcgtttg-ttttcgtccgtagtcggaccctgctc 932 ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| Sbjct: 3443 caaggatggacgtcgttcttcttttgtcgtttgtttttcatccatagtcggaccctgctc 3384 Query: 933 ttactcttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgta 992 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 3383 ttactcttgatgattatgtaatgtactgaggtgactctgatgtagcttgtggcgagtgta 3324 Query: 993 agccaac 999 ||||||| Sbjct: 3323 agccaac 3317 Score = 87.7 bits (44), Expect = 7e-14 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 |||||||||||||||||||| ||||||||||||||||||||||| |||| | | |||| Sbjct: 4949 agttccgcaagcgtgtcgga-tgtgaggacccgttcgactacgtcggttcgtctgcttca 4891 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | ||| |||||||||||||||||||||||| Sbjct: 4890 cggaggcattcttcttccaagcgggatctcag 4859
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 313 bits (158), Expect = 7e-82 Identities = 173/178 (97%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatagcaagg 878 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 2730 ttcttcttcttcttcatcaatctaggatgggttccagaccggcagcctgggatagcaagg 2671 Query: 879 atggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctcttactc 938 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | Sbjct: 2670 atggacgtcgttcttcttttctcggttgttttcgtccgtagtcggaccctgctcttaccc 2611 Query: 939 ttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaagcc 996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2610 ttgatgattatgtaatgtactgatgtgactctgatgtagcttgtggcgagtgtaagcc 2553 Score = 111 bits (56), Expect = 5e-21 Identities = 74/80 (92%) Strand = Plus / Minus Query: 754 cagttgcaggtacaggtaaagattacttgacgcgagcgcgttgattgttcatttggagtt 813 |||||||| ||||| |||||| ||||||||||||||||||| ||||||| |||||||||| Sbjct: 2822 cagttgcaagtacatgtaaaggttacttgacgcgagcgcgtggattgtttatttggagtt 2763 Query: 814 gcttgttcttcttcttcttc 833 |||| ||||||||||||||| Sbjct: 2762 gcttcttcttcttcttcttc 2743
>gb|DQ663707.1| Brachypodium distachyon Sukkula retrotransposon, partial sequence Length = 324 Score = 260 bits (131), Expect = 9e-66 Identities = 140/143 (97%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggacgtcattcttcttttgtcgtttattttcgtccgtag 60 Query: 920 tcggaccctgctcttactcttgatgattatgtaatgtactgatgtgactctgatgtagct 979 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 61 tcggaccctgctcttactcttgatgattatgtgatgtactgatgtgactctgatgtagct 120 Query: 980 tgtggcgagtgtaagccaactct 1002 ||||||||||||||||||||||| Sbjct: 121 tgtggcgagtgtaagccaactct 143
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 228 bits (115), Expect = 3e-56 Identities = 189/211 (89%), Gaps = 7/211 (3%) Strand = Plus / Plus Query: 790 cgcgttgattgttcatttggagttgcttgttcttcttcttcttcatcgatctaggatggg 849 |||| ||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| Sbjct: 2197 cgcgatgattgttcatttggagtttcttcttctt--tcttcttcgtcgatctaggatggg 2254 Query: 850 ttccaggccggcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttt 909 ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 2255 ttccaggtcggcagcctgggatagcaaggatggacgtcg---ttcttttatcgtttgttt 2311 Query: 910 tcgtccgtagtcggaccctgctcttactcttgatgat--tatgtaatgtactgatgtgac 967 |||| |||||||||||||||||||| || || ||| ||||||||||| |||||||| Sbjct: 2312 tcgttcgtagtcggaccctgctcttcttcatggcgattgtatgtaatgtatcgatgtgac 2371 Query: 968 tctgatgtagcttgtggcgagtgtaagccaa 998 |||||||||||||||||||| |||||||||| Sbjct: 2372 tctgatgtagcttgtggcgattgtaagccaa 2402 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 |||| |||||||||||||||||||||||| ||||||| ||||||||||| | | |||| Sbjct: 774 agtttcgcaagcgtgtcggaatgtgaggaaccgttcggctacgttggttcgtctgcttca 833 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | || | ||||||||||||||| ||||||||| Sbjct: 834 cggattcgttcttcttccaagcaggatctcag 865
>gb|DQ663708.1| Brachypodium distachyon Sukkula retrotransposon, partial sequence Length = 325 Score = 204 bits (103), Expect = 5e-49 Identities = 153/166 (92%), Gaps = 4/166 (2%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 ||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||| Sbjct: 1 gcagcctgggatagcaaggatggacgtcgttcttcttttctccttcgttttcgtccatag 60 Query: 920 tcggaccctgctcttactcttgatgattatgtaatgtactgatgtgactctgatgtagct 979 |||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct: 61 tcggaccctgctcttactcttgatgaatatg-caggtactgatgtgactctgatgtagct 119 Query: 980 tgtggcgagtgtaagccaactctgaatatatatatctcttcttttc 1025 ||||||||||||||| ||| ||| || |||||||||||||||||| Sbjct: 120 tgtggcgagtgtaagtcaattct--at-tatatatctcttcttttc 162
>gb|DQ995513.1| Hordeum vulgare clone 604d05_c-69 genomic sequence Length = 20922 Score = 159 bits (80), Expect = 2e-35 Identities = 89/92 (96%) Strand = Plus / Minus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct: 286 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggttcgccgactcca 227 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 |||||||||||||||||||||||||||||||| Sbjct: 226 ccgagttgttcttcttccaagcgggatctcag 195
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 131 bits (66), Expect = 6e-27 Identities = 105/117 (89%), Gaps = 7/117 (5%) Strand = Plus / Plus Query: 818 gttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatagcaag 877 |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 4121 gttcttcttcttcttcttcgatataggatgggttccagg-cggcagcctgggatagcaag 4179 Query: 878 gatggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctctt 934 |||||| ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 4180 gatggatgtc------attttatcgtttgttttcgtccgtagtcggaccctgctctt 4230 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 973 tgtagcttgtggcgagtgtaagccaa 998 |||||||||||||||||||||||||| Sbjct: 4274 tgtagcttgtggcgagtgtaagccaa 4299 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Plus Query: 732 gttcttcttccaagcgggatctcag 756 ||||||||||||||||||||||||| Sbjct: 2763 gttcttcttccaagcgggatctcag 2787
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 97.6 bits (49), Expect = 8e-17 Identities = 100/116 (86%), Gaps = 7/116 (6%) Strand = Plus / Plus Query: 819 ttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatagcaagg 878 ||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 3923 ttcttcttcttcttctttgatccaggatgggttccagg-cggcagcctgggatagcaagg 3981 Query: 879 atggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctctt 934 |||| ||| |||| ||||||||||||||||||||| |||||||||||| Sbjct: 3982 atgggtgtc------attttatcgtttgttttcgtccgtagttagaccctgctctt 4031 Score = 54.0 bits (27), Expect = 0.001 Identities = 63/75 (84%) Strand = Plus / Plus Query: 680 tcggaatgtgaggacccgttcgactacgttggtttgccgacttctccgagttgttcttct 739 ||||| |||||||| |||||||||||||||||| | ||||| | | | |||||||| Sbjct: 2509 tcggagtgtgaggattcgttcgactacgttggttcgtttacttcacggtttcgttcttct 2568 Query: 740 tccaagcgggatctc 754 ||||||||||||||| Sbjct: 2569 tccaagcgggatctc 2583 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 973 tgtagcttgtggcgagtgtaagccaa 998 |||||||||||||||||||||||||| Sbjct: 4075 tgtagcttgtggcgagtgtaagccaa 4100
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 91.7 bits (46), Expect = 5e-15 Identities = 100/117 (85%), Gaps = 7/117 (5%) Strand = Plus / Plus Query: 819 ttcttcttcttcttcatcgatctaggatgggttccaggccggcagcctgggatagcaagg 878 |||||||||||||||||| || |||||||| ||| ||| ||||||||| ||||||||||| Sbjct: 4234 ttcttcttcttcttcatcaatttaggatggattctagg-cggcagcctaggatagcaagg 4292 Query: 879 atggacgtcgttcttcttttgtcgtttgttttcgtccgtagtcggaccctgctctta 935 ||||| ||| |||| | ||||| |||||||||||||||||||||||||||| Sbjct: 4293 atggatgtc------attttattgtttgatttcgtccgtagtcggaccctgctctta 4343 Score = 73.8 bits (37), Expect = 1e-09 Identities = 43/45 (95%) Strand = Plus / Plus Query: 954 tgtactgatgtgactctgatgtagcttgtggcgagtgtaagccaa 998 |||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 4366 tgtattgatgtgactctgatgtagcttgtgacgagtgtaagccaa 4410 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 732 gttcttcttccaagcgggatctcag 756 ||||||||||| ||||||||||||| Sbjct: 2849 gttcttcttccgagcgggatctcag 2873
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 665 agttccgcaagcgtgtcggaatgtgaggacccgttcgactacgttggtttgccgacttct 724 |||| |||||||||||||||||||||||| ||||||| ||||||||||| | | |||| Sbjct: 6003 agtttcgcaagcgtgtcggaatgtgaggaaccgttcggctacgttggttcgtctgcttca 6062 Query: 725 ccgagttgttcttcttccaagcgggatctcag 756 | || | ||||||||||||||| ||||||||| Sbjct: 6063 cggattcgttcttcttccaagcaggatctcag 6094
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 79.8 bits (40), Expect = 2e-11 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 79.8 bits (40), Expect = 2e-11 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| |||||| || ||||||||||||||| |||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt------ttatcgtttgttttcgtctgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 |||| |||||||||||||||||||||||| Sbjct: 110 tgatttagcttgtggcgagtgtaagccaa 138
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 79.8 bits (40), Expect = 2e-11 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 79.8 bits (40), Expect = 2e-11 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 75.8 bits (38), Expect = 3e-10 Identities = 120/145 (82%), Gaps = 13/145 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| || ||| || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgttgtt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctcttactct-tgatgattatgta-----atgtactgatgtgactctgat 973 |||||||||||||| || | |||||||| | || ||||| |||||||| || | Sbjct: 55 ccggaccctgctctt-ctgtatgatgattgtatatattgatgtattgatgtgatattgtt 113 Query: 974 gtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||| Sbjct: 114 gtagcttgtggcgagtgtaagccaa 138
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 71.9 bits (36), Expect = 4e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| || ||| || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgttgtt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 |||||||||||||| Sbjct: 55 ccggaccctgctctt 69 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 973 tgtagcttgtggcgagtgtaagccaa 998 |||||||||||||||||||||||||| Sbjct: 112 tgtagcttgtggcgagtgtaagccaa 137
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 71.9 bits (36), Expect = 4e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| || ||| || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgttgtt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 |||||||||||||| Sbjct: 55 ccggaccctgctctt 69 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 973 tgtagcttgtggcgagtgtaagccaa 998 |||||||||||||||||||||||||| Sbjct: 112 tgtagcttgtggcgagtgtaagccaa 137
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 71.9 bits (36), Expect = 4e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || || ||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcatttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 71.9 bits (36), Expect = 4e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || || ||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcatttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 63.9 bits (32), Expect = 1e-06 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || |||||||||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcgtttgttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||| Sbjct: 55 atggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 63.9 bits (32), Expect = 1e-06 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgttcttcttttgtcgtttgttttcgtccgtag 919 |||||||||||||||||||||||| ||| || || || ||| ||||||||||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcatt------ttatcattttttttcgtccgtag 54 Query: 920 tcggaccctgctctt 934 ||||||||||||||| Sbjct: 55 tcggaccctgctctt 69 Score = 58.0 bits (29), Expect = 7e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 970 tgatgtagcttgtggcgagtgtaagccaa 998 ||||||||||||||||||||||||||||| Sbjct: 110 tgatgtagcttgtggcgagtgtaagccaa 138
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgtt 890 |||||||||||||||||||||||| |||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt 31
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgtt 890 |||||||||||||||||||||||| |||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt 31
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgtt 890 |||||||||||||||||||||||| |||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt 31
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgtt 890 |||||||||||||||||||||||| |||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt 31
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgtt 890 |||||||||||||||||||||||| |||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt 31
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 860 gcagcctgggatagcaaggatggacgtcgtt 890 |||||||||||||||||||||||| |||||| Sbjct: 1 gcagcctgggatagcaaggatggatgtcgtt 31
>emb|BX322643.8| Zebrafish DNA sequence from clone CH211-281E1 in linkage group 21, complete sequence Length = 153972 Score = 48.1 bits (24), Expect = 0.064 Identities = 24/24 (100%) Strand = Plus / Minus Query: 247 cctccctgcttcctttcctctcac 270 |||||||||||||||||||||||| Sbjct: 19436 cctccctgcttcctttcctctcac 19413
>emb|BX649268.11| Zebrafish DNA sequence from clone DKEY-106J22 in linkage group 21, complete sequence Length = 172409 Score = 48.1 bits (24), Expect = 0.064 Identities = 24/24 (100%) Strand = Plus / Minus Query: 247 cctccctgcttcctttcctctcac 270 |||||||||||||||||||||||| Sbjct: 117754 cctccctgcttcctttcctctcac 117731
>emb|CT009588.1| Triticum turgidum Length = 136372 Score = 46.1 bits (23), Expect = 0.25 Identities = 51/59 (86%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 818 gttcttcttcttcttcatcgatctagg-atgggttccaggccggcagcctgggatagca 875 ||||||||||| |||| |||||| || || ||||||||| |||||||||||| ||||| Sbjct: 30205 gttcttcttctgcttcttcgatcaggggataggttccaggtcggcagcctgggctagca 30147
>ref|NM_001035974.1| Arabidopsis thaliana unknown protein (AT1G15750) mRNA, complete cds Length = 4266 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 819 ttcttcttcttcttcatcgatct 841 ||||||||||||||||||||||| Sbjct: 42 ttcttcttcttcttcatcgatct 64
>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence Length = 237590 Score = 46.1 bits (23), Expect = 0.25 Identities = 29/31 (93%) Strand = Plus / Minus Query: 274 ttctctcccccatgctgagctctgtcctctt 304 ||||||||||| | ||||||||||||||||| Sbjct: 130439 ttctctccccctttctgagctctgtcctctt 130409
>gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence Length = 77521 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatct 841 ||||||||||||||||||||||| Sbjct: 33445 ttcttcttcttcttcatcgatct 33423
>ref|NM_102468.1| Arabidopsis thaliana Ran GTPase binding (AT1G27060) mRNA, complete cds Length = 1161 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 815 cttgttcttcttcttcttcatc 836 |||||||||||||||||||||| Sbjct: 49 cttgttcttcttcttcttcatc 28
>gb|AC122168.14| Medicago truncatula clone mth2-4o4, complete sequence Length = 120886 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 812 ttgcttgttcttcttcttcttc 833 |||||||||||||||||||||| Sbjct: 42713 ttgcttgttcttcttcttcttc 42734
>ref|XM_712010.1| Candida albicans SC5314 hypothetical protein (CaO19_5299), mRNA Length = 594 Score = 44.1 bits (22), Expect = 0.99 Identities = 28/30 (93%) Strand = Plus / Minus Query: 804 atttggagttgcttgttcttcttcttcttc 833 |||||||||| ||| ||||||||||||||| Sbjct: 543 atttggagtttcttcttcttcttcttcttc 514
>gb|AC098390.6| Rattus norvegicus 1 BAC CH230-1M24 (Children's Hospital Oakland Research Institute) complete sequence Length = 196477 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 ctctgtcctctttcccttcccc 314 |||||||||||||||||||||| Sbjct: 122404 ctctgtcctctttcccttcccc 122383
>gb|AC125055.3| Mus musculus BAC clone RP23-397L11 from chromosome 7, complete sequence Length = 209066 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Minus Query: 242 ctcctcctccctgcttcctttcctct 267 |||||||||||| ||||||||||||| Sbjct: 23578 ctcctcctcccttcttcctttcctct 23553
>gb|AC157667.11| Mus musculus 6 BAC RP24-86B22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 206878 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 tcctttcctctcactggttctctccc 282 |||||||||||||||| ||||||||| Sbjct: 3613 tcctttcctctcactgattctctccc 3638
>gb|AC125227.6| Mus musculus BAC clone RP23-42I13 from chromosome 7, complete sequence Length = 211209 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Plus Query: 242 ctcctcctccctgcttcctttcctct 267 |||||||||||| ||||||||||||| Sbjct: 17451 ctcctcctcccttcttcctttcctct 17476
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 77634 ttcttctgcttcttcgtcgatcataggatgggttccag 77597
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Plus Query: 814 gcttgttcttcttcttcttcatcgat 839 |||||||||||||| ||||||||||| Sbjct: 53198 gcttgttcttcttcgtcttcatcgat 53223
>emb|AL662882.13| Mouse DNA sequence from clone RP23-187N13 on chromosome 11, complete sequence Length = 222359 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 812 ttgcttgttcttcttcttcttc 833 |||||||||||||||||||||| Sbjct: 83871 ttgcttgttcttcttcttcttc 83892
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence Length = 111566 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 815 cttgttcttcttcttcttcatc 836 |||||||||||||||||||||| Sbjct: 36705 cttgttcttcttcttcttcatc 36684
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 801 ttcatttggagttgcttgttct 822 |||||||||||||||||||||| Sbjct: 116835 ttcatttggagttgcttgttct 116856
>ref|XM_448795.1| Candida glabrata CBS138, CAGL0L00495g partial mRNA Length = 2118 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Minus Query: 814 gcttgttcttcttcttcttcatcgat 839 |||||||||||||| ||||||||||| Sbjct: 2045 gcttgttcttcttcgtcttcatcgat 2020
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 7754 ttcttctgcttcttcgtcgatcataggatgggttccag 7717 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 973 tgtagcttgtggcgagtgtaa 993 ||||||||||||||||||||| Sbjct: 7603 tgtagcttgtggcgagtgtaa 7583
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 7523 ttcttctgcttcttcgtcgatcataggatgggttccag 7486 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 973 tgtagcttgtggcgagtgtaa 993 ||||||||||||||||||||| Sbjct: 7372 tgtagcttgtggcgagtgtaa 7352
>gb|AY747599.1| Triticum aestivum cultivar IL369 line VRN-A1 (VRN-A1) gene, complete cds; and gypsy retrotransposon Sukkula, complete sequence Length = 6730 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 2017 ttcttctgcttcttcgtcgatcataggatgggttccag 1980
>emb|BX649462.9| Mouse DNA sequence from clone RP23-324J22 on chromosome 7, complete sequence Length = 157941 Score = 44.1 bits (22), Expect = 0.99 Identities = 31/34 (91%) Strand = Plus / Minus Query: 247 cctccctgcttcctttcctctcactggttctctc 280 ||||||| |||||||||||||| ||| ||||||| Sbjct: 111620 cctccctccttcctttcctctctctgtttctctc 111587
>gb|AC006531.1|AC006531 Homo sapiens chromosome 16 clone 113K5, complete sequence Length = 167525 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 ctgcttcctttcctctcactgg 273 |||||||||||||||||||||| Sbjct: 128692 ctgcttcctttcctctcactgg 128671
>gb|AC152751.22| Medicago truncatula clone mth2-18n7, complete sequence Length = 117170 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 812 ttgcttgttcttcttcttcttc 833 |||||||||||||||||||||| Sbjct: 24458 ttgcttgttcttcttcttcttc 24437
>gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) gene, complete cds Length = 16209 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 11083 ttcttctgcttcttcgtcgatcataggatgggttccag 11046
>gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) gene, complete cds Length = 15688 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 10562 ttcttctgcttcttcgtcgatcataggatgggttccag 10525
>gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) gene, complete cds Length = 16224 Score = 44.1 bits (22), Expect = 0.99 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatc-taggatgggttccag 855 ||||||| ||||||| |||||| ||||||||||||||| Sbjct: 11098 ttcttctgcttcttcgtcgatcataggatgggttccag 11061
>gb|AC125530.4| Mus musculus BAC clone RP23-387J8 from 6, complete sequence Length = 200068 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Minus Query: 257 tcctttcctctcactggttctctccc 282 |||||||||||||||| ||||||||| Sbjct: 53867 tcctttcctctcactgattctctccc 53842
>gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 139300 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 ccaggctgcctctcctcctccc 252 |||||||||||||||||||||| Sbjct: 111479 ccaggctgcctctcctcctccc 111500
>emb|CT963134.11| M.truncatula DNA sequence from clone MTH2-30E17 on chromosome 3, complete sequence Length = 129281 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 815 cttgttcttcttcttcttcat 835 ||||||||||||||||||||| Sbjct: 2924 cttgttcttcttcttcttcat 2904
>emb|CT834635.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA019L20, full insert sequence Length = 987 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgat 839 ||||||||||||||||||||| Sbjct: 872 ttcttcttcttcttcatcgat 852
>ref|NM_001074856.1| Oryza sativa (japonica cultivar-group) Os11g0634200 (Os11g0634200) mRNA, complete cds Length = 1027 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgat 839 ||||||||||||||||||||| Sbjct: 921 ttcttcttcttcttcatcgat 901
>ref|XR_025506.1| PREDICTED: Pan troglodytes hypothetical LOC452006 (LRP1), mRNA Length = 13634 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 11254 gctgcctctcctcctccctgc 11274
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 890 tcttcttttgtcgtttgtttt 910 ||||||||||||||||||||| Sbjct: 220584 tcttcttttgtcgtttgtttt 220564
>ref|XM_001115596.1| PREDICTED: Macaca mulatta similar to longevity assurance gene 1 isoform 1 (LOC720298), mRNA Length = 2425 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 gctgccccagccgcgccgcac 183 ||||||||||||||||||||| Sbjct: 26 gctgccccagccgcgccgcac 6
>ref|NM_125446.2| Arabidopsis thaliana unknown protein (AT5G60530) mRNA, complete cds Length = 1704 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 63 tgcttgttcttcttcttcttc 43
>ref|XM_632812.1| Dictyostelium discoideum AX4 MCM family protein (mcm9) mRNA, complete cds Length = 3828 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 815 cttgttcttcttcttcttcat 835 ||||||||||||||||||||| Sbjct: 2296 cttgttcttcttcttcttcat 2276
>ref|XM_632763.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0186817) mRNA, complete cds Length = 2220 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 816 ttgttcttcttcttcttcatc 836 ||||||||||||||||||||| Sbjct: 321 ttgttcttcttcttcttcatc 341
>gb|AC154789.2| Mus musculus BAC clone RP24-479C22 from chromosome 17, complete sequence Length = 163182 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 816 ttgttcttcttcttcttcatc 836 ||||||||||||||||||||| Sbjct: 146541 ttgttcttcttcttcttcatc 146561
>gb|AC154842.2| Mus musculus BAC clone RP23-55C11 from chromosome 17, complete sequence Length = 252431 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 816 ttgttcttcttcttcttcatc 836 ||||||||||||||||||||| Sbjct: 29599 ttgttcttcttcttcttcatc 29619
>gb|AY456271.1| Nicotiana attenuata WRKY3 mRNA, complete cds Length = 1525 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 818 gttcttcttcttcttcatcga 838 ||||||||||||||||||||| Sbjct: 623 gttcttcttcttcttcatcga 603
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 980 tgtggcgagtgtaagccaact 1000 ||||||||||||||||||||| Sbjct: 66778 tgtggcgagtgtaagccaact 66798
>gb|AY023628.1| Oryza sativa microsatellite MRG5953 containing (TTC)X8, closest to marker S10074, genomic sequence Length = 224 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 95 tgcttgttcttcttcttcttc 115
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 859 ggcagcctgggatagcaagga 879 ||||||||||||||||||||| Sbjct: 170001 ggcagcctgggatagcaagga 170021
>gb|BC041866.1| Homo sapiens zinc finger, FYVE domain containing 28, mRNA (cDNA clone IMAGE:5271382), complete cds Length = 3828 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ctccctgcttcctttcctctc 268 ||||||||||||||||||||| Sbjct: 1913 ctccctgcttcctttcctctc 1893
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 815 cttgttcttcttcttcttcatcgat 839 |||||||||||||||| |||||||| Sbjct: 64586 cttgttcttcttcttcatcatcgat 64562
>ref|XM_616109.2| PREDICTED: Bos taurus similar to Low-density lipoprotein receptor-related protein 1 precursor (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91) (LOC535991), mRNA Length = 3684 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 1067 gctgcctctcctcctccctgc 1087
>ref|XM_708587.1| Candida albicans SC5314 putative nucleolar FKBP-type peptidylprolyl cis/trans isomerase (CaO19.8632), mRNA Length = 1287 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttcatcg 837 ||||| ||||||||||||||||||| Sbjct: 276 tgcttcttcttcttcttcttcatcg 252
>ref|XM_708542.1| Candida albicans SC5314 putative nucleolar FKBP-type peptidylprolyl cis/trans isomerase (CaO19.1030), mRNA Length = 1281 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttcatcg 837 ||||| ||||||||||||||||||| Sbjct: 276 tgcttcttcttcttcttcttcatcg 252
>gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, complete sequence Length = 218429 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 tcctcctccctgcttcctttc 263 ||||||||||||||||||||| Sbjct: 111460 tcctcctccctgcttcctttc 111480
>gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence Length = 133022 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgat 839 ||||||||||||||||||||| Sbjct: 110222 ttcttcttcttcttcatcgat 110202
>gb|AC101879.8| Mus musculus chromosome 7, clone RP23-378H21, complete sequence Length = 174481 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 tcctcctccctgcttcctttc 263 ||||||||||||||||||||| Sbjct: 23379 tcctcctccctgcttcctttc 23359
>dbj|AK122840.1| Homo sapiens cDNA FLJ16451 fis, clone BRAWH3001918, highly similar to Low-density lipoprotein receptor-related protein 1 precursor Length = 5114 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 1458 gctgcctctcctcctccctgc 1478
>ref|NM_001039838.1| Danio rerio zgc:136626 (zgc:136626), mRNA gb|BC114232.1| Danio rerio zgc:136626, mRNA (cDNA clone MGC:136626 IMAGE:7054847), complete cds Length = 2240 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 615 tccctcctctgcttcctctcgctgt 639 ||||||||||||||||||| ||||| Sbjct: 1505 tccctcctctgcttcctcttgctgt 1481
>gb|BC098883.1| Danio rerio cDNA clone IMAGE:2601228, containing frame-shift errors Length = 4509 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 812 ttgcttgttcttcttcttctt 832 ||||||||||||||||||||| Sbjct: 2000 ttgcttgttcttcttcttctt 1980
>gb|AF397423.1| Homo sapiens SOST gene, 3' UTR, MEOX1 gene, 5' UTR, and SOST/MEOX1 intergenic region Length = 93790 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 cctgtccctcctctgcttcct 631 ||||||||||||||||||||| Sbjct: 11277 cctgtccctcctctgcttcct 11297
>dbj|AK220585.1| Arabidopsis thaliana mRNA for late embryonic abundant protein - like, partial cds, clone: RAFL17-27-G09 Length = 404 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 66 tgcttgttcttcttcttcttc 46
>emb|BX936301.8| Zebrafish DNA sequence from clone CH211-261H10 in linkage group 9, complete sequence Length = 112250 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 812 ttgcttgttcttcttcttctt 832 ||||||||||||||||||||| Sbjct: 28979 ttgcttgttcttcttcttctt 28959
>ref|XM_809360.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511815.160) partial mRNA Length = 2727 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 816 ttgttcttcttcttcttcatc 836 ||||||||||||||||||||| Sbjct: 1667 ttgttcttcttcttcttcatc 1647
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 26196863 tgcttgttcttcttcttcttc 26196843
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 819 ttcttcttcttcttcatcgat 839 ||||||||||||||||||||| Sbjct: 24095204 ttcttcttcttcttcatcgat 24095224
>gb|AC055813.9| Homo sapiens chromosome 17, clone RP11-209M4, complete sequence Length = 80117 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 cctgtccctcctctgcttcct 631 ||||||||||||||||||||| Sbjct: 51504 cctgtccctcctctgcttcct 51484
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 815 cttgttcttcttcttcttcatcgat 839 |||||||||||||||| |||||||| Sbjct: 3186869 cttgttcttcttcttcatcatcgat 3186845
>gb|AC091435.3| Homo sapiens chromosome 5 clone RP11-122C5, complete sequence Length = 145887 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 74385 tgcttgttcttcttcttcttc 74365
>ref|XM_689292.1| PREDICTED: Danio rerio similar to Neurofilament triplet L protein (68 kDa neurofilament protein) (Neurofilament light polypeptide) (NF-L) (LOC566027), mRNA Length = 2009 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 615 tccctcctctgcttcctctcgctgt 639 ||||||||||||||||||| ||||| Sbjct: 1508 tccctcctctgcttcctcttgctgt 1484
>emb|AL158068.18| Human DNA sequence from clone RP11-478C1 on chromosome 4, complete sequence Length = 178338 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ctccctgcttcctttcctctc 268 ||||||||||||||||||||| Sbjct: 64506 ctccctgcttcctttcctctc 64486
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 859 ggcagcctgggatagcaagga 879 ||||||||||||||||||||| Sbjct: 20020 ggcagcctgggatagcaagga 20040
>gb|AC068533.7| Homo sapiens PAC clone RP5-1132H15 from 7, complete sequence Length = 140974 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ctcctcctccctgcttcctttcctc 266 |||||||||||| |||||||||||| Sbjct: 58928 ctcctcctcccttcttcctttcctc 58952
>gb|AY054263.1| Arabidopsis thaliana AT5g60530/muf9_180 mRNA, complete cds Length = 1675 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 63 tgcttgttcttcttcttcttc 43
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 890 tcttcttttgtcgtttgtttt 910 ||||||||||||||||||||| Sbjct: 44606 tcttcttttgtcgtttgtttt 44586
>gb|AY085733.1| Arabidopsis thaliana clone 17483 mRNA, complete sequence Length = 1886 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 817 tgttcttcttcttcttcatcg 837 ||||||||||||||||||||| Sbjct: 606 tgttcttcttcttcttcatcg 626
>emb|X55077.1|HSA2MR H.sapiens mRNA fragment for alpha-2 macroglobulin receptor Length = 1772 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 1436 gctgcctctcctcctccctgc 1456
>emb|BX247888.10| Zebrafish DNA sequence from clone DKEY-10D15 in linkage group 9, complete sequence Length = 223425 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 812 ttgcttgttcttcttcttctt 832 ||||||||||||||||||||| Sbjct: 51297 ttgcttgttcttcttcttctt 51277
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cttcctttcctctcactggtt 275 ||||||||||||||||||||| Sbjct: 2380 cttcctttcctctcactggtt 2360
>gb|AC154383.2| Mus musculus BAC clone RP23-38N16 from chromosome 16, complete sequence Length = 205926 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gtcgggaccaggctgcctctc 244 ||||||||||||||||||||| Sbjct: 110751 gtcgggaccaggctgcctctc 110731
>emb|BX470259.9| Zebrafish DNA sequence from clone CH211-225N18 in linkage group 15, complete sequence Length = 188687 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 tgctgagctctgtcctctttc 306 ||||||||||||||||||||| Sbjct: 26130 tgctgagctctgtcctctttc 26110
>gb|AC137834.9| Homo sapiens 12 BAC RP11-123K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109523 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 87237 gctgcctctcctcctccctgc 87217
>gb|AC078955.25| Homo sapiens 12 BAC RP11-543H12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159577 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 812 ttgcttgttcttcttcttctt 832 ||||||||||||||||||||| Sbjct: 55876 ttgcttgttcttcttcttctt 55856
>dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9 Length = 77298 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 56217 tgcttgttcttcttcttcttc 56237
>dbj|AK066700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073J21, full insert sequence Length = 1028 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgat 839 ||||||||||||||||||||| Sbjct: 922 ttcttcttcttcttcatcgat 902
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 819 ttcttcttcttcttcatcgatctag 843 ||||||||||||||| ||||||||| Sbjct: 71002 ttcttcttcttcttcttcgatctag 70978
>emb|BX005158.8| Zebrafish DNA sequence from clone DKEY-222N6 in linkage group 8, complete sequence Length = 74638 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 615 tccctcctctgcttcctctcgctgt 639 ||||||||||||||||||| ||||| Sbjct: 408 tccctcctctgcttcctcttgctgt 384
>ref|XM_316446.2| Anopheles gambiae str. PEST ENSANGP00000004269 (ENSANGG00000003369), partial mRNA Length = 2175 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 catctgtgcgccgccacccacctcg 53 |||||||||| |||||||||||||| Sbjct: 1119 catctgtgcgacgccacccacctcg 1143
>gb|DQ314873.1| Homo sapiens low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) (LRP1) gene, complete cds Length = 88248 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 78669 gctgcctctcctcctccctgc 78689
>gb|AF058423.1|HSLRPSS53 Homo sapiens lipoprotein receptor-related protein (LRP1), exons 71 through 75 Length = 1544 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 852 gctgcctctcctcctccctgc 872
>emb|AL954310.6| Zebrafish DNA sequence from clone CH211-255G12, complete sequence Length = 156407 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 615 tccctcctctgcttcctctcgctgt 639 ||||||||||||||||||| ||||| Sbjct: 154815 tccctcctctgcttcctcttgctgt 154791
>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete sequence Length = 65196 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 890 tcttcttttgtcgtttgtttt 910 ||||||||||||||||||||| Sbjct: 59170 tcttcttttgtcgtttgtttt 59190
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 813 tgcttgttcttcttcttcttc 833 ||||||||||||||||||||| Sbjct: 87101 tgcttgttcttcttcttcttc 87081
>emb|Z54146.1|HSL129H7B Human DNA sequence from clone LA04NC01-129H7 on chromosome 4, complete sequence Length = 20149 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ctccctgcttcctttcctctc 268 ||||||||||||||||||||| Sbjct: 14203 ctccctgcttcctttcctctc 14183
>ref|NM_002332.1| Homo sapiens low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) (LRP1), mRNA emb|X13916.1|HSLDLRRL Human mRNA for LDL-receptor related protein Length = 14896 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 11724 gctgcctctcctcctccctgc 11744
>gb|U06995.1|HSA2MRLR19 Human alpha-2-macroglobulin receptor/lipoprotein receptor protein (A2MR/LRP) gene, exons 73-75 Length = 600 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gctgcctctcctcctccctgc 255 ||||||||||||||||||||| Sbjct: 80 gctgcctctcctcctccctgc 100
>emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chromosome X, complete sequence Length = 150695 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 801 ttcatttggagttgcttgttcttcttcttcttc 833 |||||||| |||| ||| ||||||||||||||| Sbjct: 139903 ttcatttgaagtttcttcttcttcttcttcttc 139935 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 178,940,702 Number of extensions: 10915588 Number of successful extensions: 873748 Number of sequences better than 10.0: 132 Number of HSP's gapped: 873692 Number of HSP's successfully gapped: 195 Length of query: 1040 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1017 Effective length of database: 18,503,978,556 Effective search space: 18818546191452 Effective search space used: 18818546191452 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
