ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf62d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001060423.1| Oryza sativa (japonica cultivar-group) Os04g0617900 (Os04g0617900) mRNA, partial cds Length = 970 Score = 117 bits (59), Expect = 8e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 419 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 478 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 479 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 538 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| |||| | ||||||||||||| ||||||| || ||||| Sbjct: 539 ggatccaccccgcccatcctcgacgacgtcctcgccaaggcgttcatgattgataaggat 598 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 599 caggtcgactggatccaggccaa 621 Score = 52.0 bits (26), Expect = 0.004 Identities = 47/54 (87%) Strand = Plus / Plus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||| ||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 153 gcctcgtgctctggcctctgacccgagccagctccaagatttctgcgttgctga 206 Score = 50.1 bits (25), Expect = 0.016 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 328 agctaccggggctgaacacgctggccatctcgctggcgcgcatcgacttcgggcccaacg 387 |||| ||||| || |||||||| | ||||||| | || ||||||||||| | ||||||| Sbjct: 216 agctgccgggcctcaacacgctcggcatctcgttcgcccgcatcgactttgcccccaacg 275 Query: 388 gcgggcagaacccgccgcacacgcaccctcg 418 | ||| |||||||||||||| |||||||| Sbjct: 276 g---gcaaaacccgccgcacacccaccctcg 303
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 117 bits (59), Expect = 8e-23 Identities = 167/203 (82%) Strand = Plus / Minus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 31427816 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 31427757 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 31427756 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 31427697 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| |||| | ||||||||||||| ||||||| || ||||| Sbjct: 31427696 ggatccaccccgcccatcctcgacgacgtcctcgccaaggcgttcatgattgataaggat 31427637 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 31427636 caggtcgactggatccaggccaa 31427614 Score = 61.9 bits (31), Expect = 4e-06 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 286 tgaacgctcagggctcggcggttacgccggtgacggtgcggcagctaccggggctgaaca 345 ||||||| |||||||| ||||| || || ||||||||| |||| ||||| || |||| Sbjct: 31428061 tgaacgcacagggctccgcggtaacccctgtgacggtgaacgagctgccgggcctcaaca 31428002 Query: 346 cgctggccatctcgctggcgcgcatcgacttcgggcccaacggcgggcagaacccgccgc 405 |||| | ||||||| | || ||||||||||| | |||||||| ||| |||||||||| Sbjct: 31428001 cgctcggcatctcgttcgcccgcatcgactttgcccccaacgg---gcaaaacccgccgc 31427945 Query: 406 acacgcaccctcg 418 |||| |||||||| Sbjct: 31427944 acacccaccctcg 31427932 Score = 52.0 bits (26), Expect = 0.004 Identities = 47/54 (87%) Strand = Plus / Minus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||| ||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 31428955 gcctcgtgctctggcctctgacccgagccagctccaagatttctgcgttgctga 31428902 Score = 44.1 bits (22), Expect = 1.0 Identities = 46/54 (85%) Strand = Plus / Minus Query: 204 gtgaatgggttcgtgtgtaagaacatgaagatggtgacggcgaacgatttcttc 257 |||||||| |||||||| |||||| ||| ||||||||||||||| |||||| Sbjct: 31428149 gtgaatggtttcgtgtgcaagaacccaaagcaggtgacggcgaacgacttcttc 31428096 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 809 cggcggcggtggcggctactatcct 833 ||||||||| ||||||||||||||| Sbjct: 20645087 cggcggcggcggcggctactatcct 20645063
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 117 bits (59), Expect = 8e-23 Identities = 167/203 (82%) Strand = Plus / Minus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 124624 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 124565 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 124564 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 124505 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| |||| | ||||||||||||| ||||||| || ||||| Sbjct: 124504 ggatccaccccgcccatcctcgacgacgtcctcgccaaggcgttcatgattgataaggat 124445 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 124444 caggtcgactggatccaggccaa 124422 Score = 61.9 bits (31), Expect = 4e-06 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 286 tgaacgctcagggctcggcggttacgccggtgacggtgcggcagctaccggggctgaaca 345 ||||||| |||||||| ||||| || || ||||||||| |||| ||||| || |||| Sbjct: 124869 tgaacgcacagggctccgcggtaacccctgtgacggtgaacgagctgccgggcctcaaca 124810 Query: 346 cgctggccatctcgctggcgcgcatcgacttcgggcccaacggcgggcagaacccgccgc 405 |||| | ||||||| | || ||||||||||| | |||||||| ||| |||||||||| Sbjct: 124809 cgctcggcatctcgttcgcccgcatcgactttgcccccaacgg---gcaaaacccgccgc 124753 Query: 406 acacgcaccctcg 418 |||| |||||||| Sbjct: 124752 acacccaccctcg 124740 Score = 52.0 bits (26), Expect = 0.004 Identities = 47/54 (87%) Strand = Plus / Minus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||| ||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 125763 gcctcgtgctctggcctctgacccgagccagctccaagatttctgcgttgctga 125710 Score = 44.1 bits (22), Expect = 1.0 Identities = 46/54 (85%) Strand = Plus / Minus Query: 204 gtgaatgggttcgtgtgtaagaacatgaagatggtgacggcgaacgatttcttc 257 |||||||| |||||||| |||||| ||| ||||||||||||||| |||||| Sbjct: 124957 gtgaatggtttcgtgtgcaagaacccaaagcaggtgacggcgaacgacttcttc 124904
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 117 bits (59), Expect = 8e-23 Identities = 167/203 (82%) Strand = Plus / Minus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 5499 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 5440 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 5439 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 5380 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| |||| | ||||||||||||| ||||||| || ||||| Sbjct: 5379 ggatccaccccgcccatcctcgacgacgtcctcgccaaggcgttcatgattgataaggat 5320 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 5319 caggtcgactggatccaggccaa 5297 Score = 61.9 bits (31), Expect = 4e-06 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 286 tgaacgctcagggctcggcggttacgccggtgacggtgcggcagctaccggggctgaaca 345 ||||||| |||||||| ||||| || || ||||||||| |||| ||||| || |||| Sbjct: 5744 tgaacgcacagggctccgcggtaacccctgtgacggtgaacgagctgccgggcctcaaca 5685 Query: 346 cgctggccatctcgctggcgcgcatcgacttcgggcccaacggcgggcagaacccgccgc 405 |||| | ||||||| | || ||||||||||| | |||||||| ||| |||||||||| Sbjct: 5684 cgctcggcatctcgttcgcccgcatcgactttgcccccaacgg---gcaaaacccgccgc 5628 Query: 406 acacgcaccctcg 418 |||| |||||||| Sbjct: 5627 acacccaccctcg 5615 Score = 52.0 bits (26), Expect = 0.004 Identities = 47/54 (87%) Strand = Plus / Minus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||| ||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 6638 gcctcgtgctctggcctctgacccgagccagctccaagatttctgcgttgctga 6585 Score = 44.1 bits (22), Expect = 1.0 Identities = 46/54 (85%) Strand = Plus / Minus Query: 204 gtgaatgggttcgtgtgtaagaacatgaagatggtgacggcgaacgatttcttc 257 |||||||| |||||||| |||||| ||| ||||||||||||||| |||||| Sbjct: 5832 gtgaatggtttcgtgtgcaagaacccaaagcaggtgacggcgaacgacttcttc 5779
>dbj|AK109057.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E11, full insert sequence Length = 974 Score = 117 bits (59), Expect = 8e-23 Identities = 167/203 (82%) Strand = Plus / Plus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 419 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 478 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 479 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 538 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| |||| | ||||||||||||| ||||||| || ||||| Sbjct: 539 ggatccaccccgcccatcctcgacgacgtcctcgccaaggcgttcatgattgataaggat 598 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 599 caggtcgactggatccaggccaa 621 Score = 52.0 bits (26), Expect = 0.004 Identities = 47/54 (87%) Strand = Plus / Plus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||| ||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 153 gcctcgtgctctggcctctgacccgagccagctccaagatttctgcgttgctga 206 Score = 50.1 bits (25), Expect = 0.016 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 328 agctaccggggctgaacacgctggccatctcgctggcgcgcatcgacttcgggcccaacg 387 |||| ||||| || |||||||| | ||||||| | || ||||||||||| | ||||||| Sbjct: 216 agctgccgggcctcaacacgctcggcatctcgttcgcccgcatcgactttgcccccaacg 275 Query: 388 gcgggcagaacccgccgcacacgcaccctcg 418 | ||| |||||||||||||| |||||||| Sbjct: 276 g---gcaaaacccgccgcacacccaccctcg 303
>emb|CT830684.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125J19, full insert sequence Length = 1090 Score = 109 bits (55), Expect = 2e-20 Identities = 166/203 (81%) Strand = Plus / Plus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 562 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 621 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 622 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 681 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| ||| | ||||||||||||| ||||||| || ||||| Sbjct: 682 ggatccaccccgcccatcctcgatgacgtcctcgccaaggcgttcatgattgataaggat 741 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 742 caggtcgactggatccaggccaa 764 Score = 69.9 bits (35), Expect = 2e-08 Identities = 104/127 (81%) Strand = Plus / Plus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctgatctaat 190 |||||||||||| ||||| ||||| ||||||||||| || ||||| |||||||| | | Sbjct: 156 gcctcgtgttctggcctctgacccgagccagctccaagatttctgcgttgctgacaaact 215 Query: 191 gaaccctgtgattgtgaatgggttcgtgtgtaagaacatgaagatggtgacggcgaacga 250 | ||||| | |||||||| |||||||| |||||| |||| ||||||||||||||| Sbjct: 216 cagtgctgtgttcgtgaatggtttcgtgtgcaagaacccgaagcaggtgacggcgaacga 275 Query: 251 tttcttc 257 |||||| Sbjct: 276 cttcttc 282 Score = 61.9 bits (31), Expect = 4e-06 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 286 tgaacgctcagggctcggcggttacgccggtgacggtgcggcagctaccggggctgaaca 345 ||||||| |||||||| ||||| || || ||||||||| |||| ||||| || |||| Sbjct: 317 tgaacgcacagggctccgcggtaacccctgtgacggtgaacgagctgccgggcctcaaca 376 Query: 346 cgctggccatctcgctggcgcgcatcgacttcgggcccaacggcgggcagaacccgccgc 405 |||| | ||||||| | || ||||||||||| | |||||||| ||| |||||||||| Sbjct: 377 cgctcggcatctcgttcgcccgcatcgactttgcccccaacgg---gcaaaacccgccgc 433 Query: 406 acacgcaccctcg 418 |||| |||||||| Sbjct: 434 acacccaccctcg 446
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 109 bits (55), Expect = 2e-20 Identities = 166/203 (81%) Strand = Plus / Minus Query: 534 ttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaaggtgcctgccgtg 593 ||||| ||||||||||| ||||||||||||||| | || || ||| || || ||||| Sbjct: 47751 ttcgtcttcccgcagggtctcatccacttccagctcaataatggcgccgtcccggccgtc 47692 Query: 594 gccatcgccgcgctcagcagccaggacgctggcgtgatcaccatcgccaacgccgtcttc 653 |||||||||||||||||||||||| || |||| ||||||||||| || || ||||| || Sbjct: 47691 gccatcgccgcgctcagcagccagaaccctggggtgatcaccattgctaatgccgtgttt 47632 Query: 654 gggtctacgccgcccatcagcgacctcatcctcgccaaggccttcatgaccgagaaggac 713 || || || ||||||||| ||| | ||||||||||||| ||||||| || ||||| Sbjct: 47631 ggatccaccccgcccatcctcgatgacgtcctcgccaaggcgttcatgattgataaggat 47572 Query: 714 accgtcgactggatccaggccaa 736 |||||||||||||||||||| Sbjct: 47571 caggtcgactggatccaggccaa 47549 Score = 61.9 bits (31), Expect = 4e-06 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 286 tgaacgctcagggctcggcggttacgccggtgacggtgcggcagctaccggggctgaaca 345 ||||||| |||||||| ||||| || || ||||||||| |||| ||||| || |||| Sbjct: 47996 tgaacgcacagggctccgcggtaacccctgtgacggtgaacgagctgccgggcctcaaca 47937 Query: 346 cgctggccatctcgctggcgcgcatcgacttcgggcccaacggcgggcagaacccgccgc 405 |||| | ||||||| | || ||||||||||| | |||||||| ||| |||||||||| Sbjct: 47936 cgctcggcatctcgttcgcccgcatcgactttgcccccaacgg---gcaaaacccgccgc 47880 Query: 406 acacgcaccctcg 418 |||| |||||||| Sbjct: 47879 acacccaccctcg 47867 Score = 60.0 bits (30), Expect = 2e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 131 gcctcgtgttctcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||||||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 48890 gcctcgtgttctggcctctgacccgagccagctccaagatttctgcgttgctga 48837 Score = 52.0 bits (26), Expect = 0.004 Identities = 47/54 (87%) Strand = Plus / Minus Query: 204 gtgaatgggttcgtgtgtaagaacatgaagatggtgacggcgaacgatttcttc 257 |||||||| |||||||| |||||| |||| ||||||||||||||| |||||| Sbjct: 48084 gtgaatggtttcgtgtgcaagaacccgaagcaggtgacggcgaacgacttcttc 48031
>ref|NM_001067694.1| Oryza sativa (japonica cultivar-group) Os08g0189400 (Os08g0189400) mRNA, complete cds Length = 675 Score = 61.9 bits (31), Expect = 4e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| |||||||||||||||||||| Sbjct: 442 gtgttcgtgttccctcaggggctcatccacttcca 476
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 61.9 bits (31), Expect = 4e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| |||||||||||||||||||| Sbjct: 5228142 gtgttcgtgttccctcaggggctcatccacttcca 5228176 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| ||||||||||||||||||| Sbjct: 5254552 gtgttcgtgttccccgaggggctcatccacttcca 5254586 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccag 566 ||||| |||||||| |||||||||||||||||||| Sbjct: 5202714 gtgtttgtgttccctgaggggctcatccacttccag 5202749 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 5223027 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 5223069 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Minus Query: 532 tgttcgtgttcccgcaggggctcatccacttccag 566 ||||||||||||||||||| || ||||||||||| Sbjct: 22546317 tgttcgtgttcccgcagggcctgctccacttccag 22546283 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 caggacttctgtgttgctgat 185 ||||||||||||||||||||| Sbjct: 5232815 caggacttctgtgttgctgat 5232835
>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1099H05 Length = 186036 Score = 61.9 bits (31), Expect = 4e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| |||||||||||||||||||| Sbjct: 96498 gtgttcgtgttccctcaggggctcatccacttcca 96532 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| ||||||||||||||||||| Sbjct: 122908 gtgttcgtgttccccgaggggctcatccacttcca 122942 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccag 566 ||||| |||||||| |||||||||||||||||||| Sbjct: 71070 gtgtttgtgttccctgaggggctcatccacttccag 71105 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 91383 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 91425 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 caggacttctgtgttgctgat 185 ||||||||||||||||||||| Sbjct: 101171 caggacttctgtgttgctgat 101191
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 61.9 bits (31), Expect = 4e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| |||||||||||||||||||| Sbjct: 19730 gtgttcgtgttccctcaggggctcatccacttcca 19764 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| ||||||||||||||||||| Sbjct: 46140 gtgttcgtgttccccgaggggctcatccacttcca 46174 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 14615 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 14657 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 caggacttctgtgttgctgat 185 ||||||||||||||||||||| Sbjct: 24403 caggacttctgtgttgctgat 24423
>emb|CT833432.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN007O02, full insert sequence Length = 1034 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 703 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 752
>emb|CT833431.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA036I14, full insert sequence Length = 1113 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 583 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 632
>ref|NM_001051951.1| Oryza sativa (japonica cultivar-group) Os01g0952000 (Os01g0952000) mRNA, complete cds Length = 1118 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 585 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 634
>ref|NM_001051950.1| Oryza sativa (japonica cultivar-group) Os01g0951900 (Os01g0951900) mRNA, complete cds Length = 1043 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 534 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 485
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 41907747 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 41907796 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Minus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 10166563 cagaacccgccgcacacgcacccgcgcg 10166536
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 9824 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 9873
>dbj|AK099691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073E02, full insert sequence Length = 1045 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 512 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 561
>dbj|AK060864.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G07, full insert sequence Length = 1118 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 585 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 634
>gb|AF072695.1|AF072695 Oryza sativa germin-like protein 8 (GER8) mRNA, partial cds Length = 631 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccaggtgaacaacggcaa 580 |||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 70 gtgttcgtcttcccgcgggggctcgtccacttccagaagaacaacggcaa 119
>ref|NM_001067698.1| Oryza sativa (japonica cultivar-group) Os08g0189900 (Os08g0189900) mRNA, complete cds Length = 867 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| ||||||||||||||||||| Sbjct: 467 gtgttcgtgttccccgaggggctcatccacttcca 501
>gb|AF141879.1|AF141879 Oryza sativa germin-like protein 2 precursor (RGLP2) mRNA, complete cds Length = 900 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttcca 565 |||||||||||||| ||||||||||||||||||| Sbjct: 467 gtgttcgtgttccccgaggggctcatccacttcca 501
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Minus Query: 796 gcggcaacagcaccggcggcggtggcggc 824 |||||||||||||||||||||| |||||| Sbjct: 21472029 gcggcaacagcaccggcggcggcggcggc 21472001
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Minus Query: 796 gcggcaacagcaccggcggcggtggcggc 824 |||||||||||||||||||||| |||||| Sbjct: 33639 gcggcaacagcaccggcggcggcggcggc 33611
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Minus Query: 796 gcggcaacagcaccggcggcggtggcggc 824 |||||||||||||||||||||| |||||| Sbjct: 89134 gcggcaacagcaccggcggcggcggcggc 89106
>dbj|AK109692.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E07, full insert sequence Length = 1670 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggcggc 824 |||||||||||||||||||||| |||||| Sbjct: 1109 gcggcaacagcaccggcggcggcggcggc 1137
>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence Length = 108651 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Plus Query: 396 aacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||||| Sbjct: 77378 aacccgccgcacacgcaccctcgcg 77402
>emb|CT830210.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124J05, full insert sequence Length = 1203 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 603 cagaacccgccgcacacgcacccgcgcg 630
>emb|CT830209.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121G19, full insert sequence Length = 1573 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 1033 cagaacccgccgcacacgcacccgcgcg 1060
>emb|CT830208.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108I17, full insert sequence Length = 1052 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 511 cagaacccgccgcacacgcacccgcgcg 538
>ref|NM_001067691.1| Oryza sativa (japonica cultivar-group) Os08g0189100 (Os08g0189100) mRNA, complete cds Length = 855 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccag 566 ||||| |||||||| |||||||||||||||||||| Sbjct: 475 gtgtttgtgttccctgaggggctcatccacttccag 510
>ref|NM_001049305.1| Oryza sativa (japonica cultivar-group) Os01g0284500 (Os01g0284500) mRNA, complete cds Length = 925 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 384 cagaacccgccgcacacgcacccgcgcg 411
>gb|AY650369.1| Macaca fascicularis dishevelled 1 mRNA, partial cds Length = 1986 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 629 gatcaccatcgccaacgccgtcttcggg 656 |||||||||||||||||||||| ||||| Sbjct: 1263 gatcaccatcgccaacgccgtcatcggg 1290
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Minus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 114032 cagaacccgccgcacacgcacccgcgcg 114005
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Minus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 31877 cagaacccgccgcacacgcacccgcgcg 31850
>dbj|AK062862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-B05, full insert sequence Length = 858 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccag 566 ||||| |||||||| |||||||||||||||||||| Sbjct: 527 gtgtttgtgttccctgaggggctcatccacttccag 562
>dbj|AK061164.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-A06, full insert sequence Length = 925 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 384 cagaacccgccgcacacgcacccgcgcg 411
>gb|AF032974.1|AF032974 Oryza sativa germin-like protein 4 (GER4) mRNA, complete cds Length = 908 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 366 cagaacccgccgcacacgcacccgcgcg 393
>gb|AF032973.1|AF032973 Oryza sativa germin-like protein 3 (GER3) mRNA, partial cds Length = 708 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 531 gtgttcgtgttcccgcaggggctcatccacttccag 566 ||||| |||||||| |||||||||||||||||||| Sbjct: 331 gtgtttgtgttccctgaggggctcatccacttccag 366
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Minus Query: 393 cagaacccgccgcacacgcaccctcgcg 420 ||||||||||||||||||||||| |||| Sbjct: 91162 cagaacccgccgcacacgcacccgcgcg 91135
>emb|CT836016.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031J17, full insert sequence Length = 938 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Plus Query: 532 tgttcgtgttcccgcaggggctcatccacttccag 566 ||||||||||||||||||| || ||||||||||| Sbjct: 469 tgttcgtgttcccgcagggcctgctccacttccag 503
>emb|CT833488.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN090L20, full insert sequence Length = 871 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 307 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 349
>ref|NM_001067693.1| Oryza sativa (japonica cultivar-group) Os08g0189300 (Os08g0189300) mRNA, complete cds Length = 893 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 315 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 357
>ref|NM_001053409.1| Oryza sativa (japonica cultivar-group) Os02g0491600 (Os02g0491600) mRNA, complete cds Length = 651 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 142 tcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||||| || ||||| |||||||||||||| || ||||| Sbjct: 59 tcgcctccgatcccagccaactccaggacttctgcgtcgctga 101
>ref|XM_001091753.1| PREDICTED: Macaca mulatta SEC63-like protein, transcript variant 1 (SEC63), mRNA Length = 2378 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 794 cggcggcaacagcaccggcggcggtggcggc 824 |||||||| ||||| |||||||||||||||| Sbjct: 73 cggcggcagcagcagcggcggcggtggcggc 103
>ref|XM_001091991.1| PREDICTED: Macaca mulatta SEC63-like protein, transcript variant 2 (SEC63), mRNA Length = 3778 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 794 cggcggcaacagcaccggcggcggtggcggc 824 |||||||| ||||| |||||||||||||||| Sbjct: 73 cggcggcagcagcagcggcggcggtggcggc 103
>ref|XM_001092110.1| PREDICTED: Macaca mulatta SEC63-like protein, transcript variant 3 (SEC63), mRNA Length = 3809 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 794 cggcggcaacagcaccggcggcggtggcggc 824 |||||||| ||||| |||||||||||||||| Sbjct: 73 cggcggcagcagcagcggcggcggtggcggc 103
>ref|XM_001092234.1| PREDICTED: Macaca mulatta SEC63-like protein, transcript variant 4 (SEC63), mRNA Length = 3908 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 794 cggcggcaacagcaccggcggcggtggcggc 824 |||||||| ||||| |||||||||||||||| Sbjct: 73 cggcggcagcagcagcggcggcggtggcggc 103
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 359 gctggcgcgcatcgacttcgggc 381 ||||||||||||||||||||||| Sbjct: 2574450 gctggcgcgcatcgacttcgggc 2574428
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Minus Query: 142 tcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||||| || ||||| |||||||||||||| || ||||| Sbjct: 17265721 tcgcctccgatcccagccaactccaggacttctgcgtcgctga 17265679
>dbj|AB177645.1| Physcomitrella patens subsp. patens PpGLP3b gene for germin-like protein, complete cds Length = 2549 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Plus Query: 591 gtggccatcgccgcgctcagcagccag 617 ||||||||||| ||||||||||||||| Sbjct: 1940 gtggccatcgcggcgctcagcagccag 1966
>dbj|AB177349.1| Physcomitrella patens subsp. patens PpGLP3a mRNA for germin-like protein, complete cds, clone:pphb1d21 Length = 1255 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Plus Query: 591 gtggccatcgccgcgctcagcagccag 617 ||||||||||| ||||||||||||||| Sbjct: 712 gtggccatcgcggcgctcagcagccag 738
>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0690E03 Length = 139924 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Minus Query: 532 tgttcgtgttcccgcaggggctcatccacttccag 566 ||||||||||||||||||| || ||||||||||| Sbjct: 19818 tgttcgtgttcccgcagggcctgctccacttccag 19784
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Minus Query: 142 tcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||||| || ||||| |||||||||||||| || ||||| Sbjct: 38404 tcgcctccgatcccagccaactccaggacttctgcgtcgctga 38362
>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0048K16 Length = 159891 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Minus Query: 142 tcgcctccgacccaagccagctccaggacttctgtgttgctga 184 |||||||||| || ||||| |||||||||||||| || ||||| Sbjct: 136488 tcgcctccgatcccagccaactccaggacttctgcgtcgctga 136446
>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0493A04 Length = 149367 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Minus Query: 532 tgttcgtgttcccgcaggggctcatccacttccag 566 ||||||||||||||||||| || ||||||||||| Sbjct: 141245 tgttcgtgttcccgcagggcctgctccacttccag 141211
>dbj|AK059338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B02, full insert sequence Length = 893 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 315 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 357
>gb|AF032971.1|AF032971 Oryza sativa germin-like protein 1 (GER1) mRNA, complete cds Length = 869 Score = 46.1 bits (23), Expect = 0.26 Identities = 38/43 (88%) Strand = Plus / Plus Query: 333 ccggggctgaacacgctggccatctcgctggcgcgcatcgact 375 |||||||| ||||| || | |||||||||||| |||||||||| Sbjct: 289 ccggggctcaacaccctcggcatctcgctggcccgcatcgact 331
>ref|NM_001074836.1| Oryza sativa (japonica cultivar-group) Os11g0623700 (Os11g0623700) mRNA, partial cds Length = 1112 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggcggct 825 |||||||||||| ||||||||| ||||||| Sbjct: 420 gcggcaacagcagcggcggcggcggcggct 449
>gb|DQ647622.1| Hordeum vulgare subsp. vulgare germin-like protein 4c (GLP4c) mRNA, complete cds Length = 914 Score = 44.1 bits (22), Expect = 1.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 144 gcctccgacccaagccagctccaggacttctgtgttgc 181 ||||||||||| ||| |||||||||||| |||||||| Sbjct: 115 gcctccgaccctggcccgctccaggacttttgtgttgc 152 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 588 gccgtggccatcgccgcgctcagcagccag 617 ||||| ||||| |||||||||||||||||| Sbjct: 565 gccgttgccattgccgcgctcagcagccag 594
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 93 ctgcttgctgtggtggtactcgtggt 118 |||||||||||||||||| ||||||| Sbjct: 3068373 ctgcttgctgtggtggtattcgtggt 3068348
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggc 821 |||||||||||| ||||||||||||| Sbjct: 31640 gcggcaacagcagcggcggcggtggc 31665
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggcggct 825 |||||||||||| ||||||||| ||||||| Sbjct: 119998 gcggcaacagcagcggcggcggcggcggct 120027
>gb|DQ020098.1| Zea mays cultivar W22 inbred aberrant pollen transmission 1 (apt1) mRNA, complete cds Length = 8635 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 gcagctgctggtggggttcgtc 470 |||||||||||||||||||||| Sbjct: 480 gcagctgctggtggggttcgtc 501
>gb|DQ020097.1| Zea mays cultivar B73 inbred aberrant pollen transmission 1 (apt1) gene, complete cds Length = 26897 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 gcagctgctggtggggttcgtc 470 |||||||||||||||||||||| Sbjct: 2820 gcagctgctggtggggttcgtc 2841
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggcggct 825 |||||||||||| ||||||||| ||||||| Sbjct: 23529312 gcggcaacagcagcggcggcggcggcggct 23529341
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggc 821 |||||||||||| ||||||||||||| Sbjct: 29105416 gcggcaacagcagcggcggcggtggc 29105441
>emb|AJ237942.1|TAE237942 Triticum aestivum mRNA for germin-like protein 2a Length = 930 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 584 gcctgccgtggccatcgccgcgctcagcagccag 617 ||||||||| || || |||||||||||||||||| Sbjct: 559 gcctgccgttgcaattgccgcgctcagcagccag 592
>dbj|AK063799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F06, full insert sequence Length = 1112 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 796 gcggcaacagcaccggcggcggtggcggct 825 |||||||||||| ||||||||| ||||||| Sbjct: 420 gcggcaacagcagcggcggcggcggcggct 449
>dbj|AB036797.1| Barbula unguiculata BuGLP mRNA for germin-like protein, complete cds Length = 927 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 533 gttcgtgttcccgcaggggctcatccacttccag 566 |||||||||||| |||| ||||||||||||||| Sbjct: 531 gttcgtgttccccaagggcctcatccacttccag 564 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 cggggctgaacacgctggccatctc 358 |||||||||||||||||| |||||| Sbjct: 350 cggggctgaacacgctgggcatctc 374
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 685 tcgccaaggccttcatgaccga 706 |||||||||||||||||||||| Sbjct: 2360072 tcgccaaggccttcatgaccga 2360051
>dbj|AB028454.1| Barbula unguiculata mRNA for germin-like protein, partial cds Length = 742 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 533 gttcgtgttcccgcaggggctcatccacttccag 566 |||||||||||| |||| ||||||||||||||| Sbjct: 346 gttcgtgttccccaagggcctcatccacttccag 379 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 cggggctgaacacgctggccatctc 358 |||||||||||||||||| |||||| Sbjct: 165 cggggctgaacacgctgggcatctc 189
>emb|CT835081.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074C02, full insert sequence Length = 674 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 809 cggcggcggtggcggctactatcct 833 ||||||||| ||||||||||||||| Sbjct: 425 cggcggcggcggcggctactatcct 401
>dbj|AK243135.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100030N12, full insert sequence Length = 979 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 caggacttctgtgttgctgat 185 ||||||||||||||||||||| Sbjct: 167 caggacttctgtgttgctgat 187
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 800 caacagcaccggcggcggtggcggc 824 |||||||| |||||||||||||||| Sbjct: 3596274 caacagcagcggcggcggtggcggc 3596250
>ref|NM_001067695.1| Oryza sativa (japonica cultivar-group) Os08g0189500 (Os08g0189500) mRNA, complete cds Length = 678 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 caggacttctgtgttgctgat 185 ||||||||||||||||||||| Sbjct: 88 caggacttctgtgttgctgat 108
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 800 caacagcaccggcggcggtggcggc 824 |||||||| |||||||||||||||| Sbjct: 2036881 caacagcagcggcggcggtggcggc 2036905
>ref|XR_012363.1| PREDICTED: Macaca mulatta similar to spectrin beta isoform a (LOC711142), mRNA Length = 7521 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 799 gcaacagcaccggcggcggtggcgg 823 ||||||| ||||||||||||||||| Sbjct: 488 gcaacagtaccggcggcggtggcgg 464
>ref|XM_362970.1| Magnaporthe grisea 70-15 predicted protein (MG08467.4) partial mRNA Length = 1236 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 803 cagcaccggcggcggtggcgg 823 ||||||||||||||||||||| Sbjct: 672 cagcaccggcggcggtggcgg 692
>ref|XM_976138.1| PREDICTED: Mus musculus phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150, transcript variant 4 (Pik3r4), mRNA Length = 3639 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 953 gtgtttgtggatcgaggggta 973 ||||||||||||||||||||| Sbjct: 3490 gtgtttgtggatcgaggggta 3510
>ref|XM_898651.2| PREDICTED: Mus musculus phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150, transcript variant 4 (Pik3r4), mRNA Length = 3639 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 953 gtgtttgtggatcgaggggta 973 ||||||||||||||||||||| Sbjct: 3490 gtgtttgtggatcgaggggta 3510
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 ggcgacgtgttcgtgttcccg 545 ||||||||||||||||||||| Sbjct: 1072202 ggcgacgtgttcgtgttcccg 1072222
>gb|BC063151.1| Rattus norvegicus cDNA clone IMAGE:6887264, containing frame-shift errors Length = 1557 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 796 gcggcaacagcaccggcggcggtgg 820 |||||||||||| |||||||||||| Sbjct: 55 gcggcaacagcagcggcggcggtgg 31
>dbj|AK042953.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730043A05 product:hypothetical Serine/Threonine protein kinase/Eukaryotic protein kinase/HEAT repeat profile containing protein, full insert sequence Length = 3614 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 953 gtgtttgtggatcgaggggta 973 ||||||||||||||||||||| Sbjct: 3478 gtgtttgtggatcgaggggta 3498
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 gccatcgccgcgctcagcagc 614 ||||||||||||||||||||| Sbjct: 5081146 gccatcgccgcgctcagcagc 5081126
>gb|AE012084.1| Xanthomonas axonopodis pv. citri str. 306, section 462 of 469 of the complete genome Length = 10300 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 gccatcgccgcgctcagcagc 614 ||||||||||||||||||||| Sbjct: 6712 gccatcgccgcgctcagcagc 6692
>emb|AL512368.9| Human DNA sequence from clone RP11-387L5 on chromosome 6, complete sequence Length = 147619 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 gctagttcactagtgaagcta 52 ||||||||||||||||||||| Sbjct: 5435 gctagttcactagtgaagcta 5455
>gb|AC093527.2| Homo sapiens chromosome 5 clone RP11-252A23, complete sequence Length = 191035 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 880 ataggtaaagaaaaataacaagcca 904 |||||||||||||||||||| |||| Sbjct: 53254 ataggtaaagaaaaataacatgcca 53278
>gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, complete sequence Length = 204567 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 agtgaagctaggaaagaaaaa 63 ||||||||||||||||||||| Sbjct: 161418 agtgaagctaggaaagaaaaa 161438
>gb|AC157514.2| Mus musculus BAC clone RP24-281C16 from chromosome 9, complete sequence Length = 191880 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 953 gtgtttgtggatcgaggggta 973 ||||||||||||||||||||| Sbjct: 102862 gtgtttgtggatcgaggggta 102842
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 808 ccggcggcggtggcggctact 828 ||||||||||||||||||||| Sbjct: 77222 ccggcggcggtggcggctact 77242
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 809 cggcggcggtggcggctactatcct 833 ||||||||| ||||||||||||||| Sbjct: 79521 cggcggcggcggcggctactatcct 79497
>gb|AF330231.1|AF330231 Chlamydomonas reinhardtii putative serine/threonine kinase (ACV4) gene, partial cds; and RNA stability factor MCA1 (MCA1) gene, complete cds Length = 12073 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 794 cggcggcaacagcaccggcggcggtggcg 822 |||||||| ||||| |||||||||||||| Sbjct: 5288 cggcggcagcagcagcggcggcggtggcg 5260
>gb|AC025761.5|AC025761 Homo sapiens chromosome 5 clone CTB-109C23, complete sequence Length = 112944 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 880 ataggtaaagaaaaataacaagcca 904 |||||||||||||||||||| |||| Sbjct: 40481 ataggtaaagaaaaataacatgcca 40457
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 634 ccatcgccaacgccgtcttcg 654 ||||||||||||||||||||| Sbjct: 3572729 ccatcgccaacgccgtcttcg 3572709
>gb|AC120547.8| Mus musculus chromosome 8, clone RP23-243L19, complete sequence Length = 170147 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 agtgaagctaggaaagaaaaa 63 ||||||||||||||||||||| Sbjct: 158262 agtgaagctaggaaagaaaaa 158242
>ref|NM_133589.2| Rattus norvegicus protein phosphatase 6, catalytic subunit (Ppp6c), mRNA gb|BC078747.1| Rattus norvegicus protein phosphatase 6, catalytic subunit, mRNA (cDNA clone MGC:93213 IMAGE:7131278), complete cds Length = 1867 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 796 gcggcaacagcaccggcggcggtgg 820 |||||||||||| |||||||||||| Sbjct: 81 gcggcaacagcagcggcggcggtgg 57
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cgctggccatctcgctggcgc 366 ||||||||||||||||||||| Sbjct: 2501494 cgctggccatctcgctggcgc 2501514
>gb|U70376.2|U70376 Streptomyces flavopersicus spectinomycin biosynthesis gene cluster, complete sequence Length = 29606 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 776 cggcggctacatgccgcccgg 796 ||||||||||||||||||||| Sbjct: 27793 cggcggctacatgccgcccgg 27813 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 156,060,860 Number of extensions: 8637549 Number of successful extensions: 191348 Number of sequences better than 10.0: 99 Number of HSP's gapped: 191325 Number of HSP's successfully gapped: 135 Length of query: 1059 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1036 Effective length of database: 18,503,978,556 Effective search space: 19170121784016 Effective search space used: 19170121784016 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
