ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf64j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 529 e-147
2dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone... 50 0.017
3gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete s... 46 0.26
4gb|AC008365.4| Drosophila melanogaster clone BACR03N12, complete... 46 0.26
5gb|AC008200.5| Drosophila melanogaster clone BACR17P04, complete... 46 0.26
6emb|Z11840.1|DMHDGHOGD D.melanogaster hedgehog gene DNA 46 0.26
7gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, com... 44 1.0
8gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, com... 44 1.0
9emb|CR676820.2|CNS0FL74 Tetraodon nigroviridis full-length cDNA 44 1.0
10emb|CR660102.2|CNS0F8B0 Tetraodon nigroviridis full-length cDNA 44 1.0
11gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, comple... 44 1.0
12emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J... 44 1.0
13emb|AL645469.18| Mouse DNA sequence from clone RP23-340E18 on ch... 44 1.0
14emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on ch... 44 1.0
15ref|XM_639870.1| Dictyostelium discoideum AX4 hypothetical prote... 42 4.1
16gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H2... 42 4.1
17gb|AC101800.8| Mus musculus chromosome 1, clone RP24-219K10, com... 42 4.1
18gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, co... 42 4.1
19gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosom... 42 4.1
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.1
21gb|AC157950.2| Mus musculus BAC clone RP23-128A23 from chromosom... 42 4.1
22emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 4.1
23gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Canc... 42 4.1
24emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on ch... 42 4.1
25gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047... 42 4.1
26gb|AC109912.10| Homo sapiens 3 BAC RP11-640G21 (Roswell Park Can... 42 4.1
27dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.1
28dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic D... 42 4.1
29gb|AC092855.39| Mus musculus strain C57BL/6J chromosome 3 clone ... 42 4.1
30emb|Y15435.1|KLPDC1GP Kluyveromyces lactis PDC1 gene, promoter r... 42 4.1
31emb|AL049830.3|CNS00009 Human chromosome 14 DNA sequence BAC R-8... 42 4.1
32emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromo... 42 4.1
33emb|AL645471.8| Mouse DNA sequence from clone RP23-456M3 on chro... 42 4.1
34emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 42 4.1

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334
 Score =  529 bits (267), Expect = e-147
 Identities = 567/667 (85%)
 Strand = Plus / Plus

                                                                       
Query: 131 ctagttgatttaagtccagggcagctgcataagctagccgagttgatccatcgacaagaa 190
           |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||
Sbjct: 87  ctagttgatttaagtccagggcagttgcataagctagccgatctgatccatcgacaagaa 146

                                                                       
Query: 191 gtgcagaagtttcaagagctcaagttccagtcatacgcggagcaacaaaagtatctcaaa 250
           || |||||| ||||||||||| ||||| | || || || ||||||||||||||||||   
Sbjct: 147 gtccagaagcttcaagagctcgagttcaactcgtatgcagagcaacaaaagtatctccgt 206

                                                                       
Query: 251 gacgccaaagaggcccgtgataaggtgtaccatatccttggcagtgcacaggacatgatt 310
           |||||||| || ||||| ||||||||||| || ||||||| |||||||| ||||||||| 
Sbjct: 207 gacgccaatgatgcccgcgataaggtgtatcacatccttgacagtgcacgggacatgata 266

                                                                       
Query: 311 atggaggccgaggccgacaaagacgccaccaagcaagatattgctaaggatgtccatggg 370
               |  ||||||| || || || |||||||||||||||||||  ||||||||| |||  
Sbjct: 267 gcacaaaccgaggctgagaaggatgccaccaagcaagatattggcaaggatgtctatgac 326

                                                                       
Query: 371 tactgcacgaaggccatcggaacatccctcaaattcatccgtagttacaacacccgtctc 430
           |||||||| ||||||||||||| ||| ||| |||||||||| ||||||||||||||||||
Sbjct: 327 tactgcaccaaggccatcggaatatctctccaattcatccggagttacaacacccgtctc 386

                                                                       
Query: 431 acctaccttgataaggtcaagacccacagtgatgatctcatcaagcagctaaagtgtctt 490
           ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  || 
Sbjct: 387 acctaccttgacaagctcaagacccacagtgatgatctcatcaagcagctaaagttcctc 446

                                                                       
Query: 491 gatccggcaactcaacagaaggaagctcaatgccttgctcttgaggctggcaggtataag 550
            |||  || || ||||||||||| || ||  ||||||| ||||||||||||| |||||||
Sbjct: 447 aatctagccacccaacagaaggaggcccagcgccttgcccttgaggctggcatgtataag 506

                                                                       
Query: 551 aaagctgcgcttgaggatgccgaaaagtttgaacattttataccaaatcaattctcagaa 610
           |||||  |||| ||| ||||| |||||||| |||| |||  |||||||||||||||| ||
Sbjct: 507 aaagccacgctggagaatgccaaaaagtttcaacactttgcaccaaatcaattctcaaaa 566

                                                                       
Query: 611 tggctcaagggtaacaaaatcaagtttcaggatctggtggcagatgataccgccaagcct 670
           ||||||||||  |||||||||| |||| ||||||| |||  |||  |||   | |||| |
Sbjct: 567 tggctcaaggaaaacaaaatcatgtttgaggatcttgtgcaagaaaatatgtcaaagctt 626

                                                                       
Query: 671 ggtttgaggggggcttttaaaaccttggatgatactcaaaagttaaaggcatatgacaat 730
           ||||| ||||||||||| |||| |||||||||||  |||||| || ||| ||||||||||
Sbjct: 627 ggttttaggggggctttcaaaaacttggatgatatccaaaagctacaggtatatgacaat 686

                                                                       
Query: 731 attattgcgggaagtggacatggaaaccccatggtgacttactcatttgaagatttggga 790
           |||||||||| |   ||||| |||||  |  ||||||||||||||||||||| |||||||
Sbjct: 687 attattgcggaagcgggacaaggaaaatctgtggtgacttactcatttgaagctttggga 746

                  
Query: 791 aaagtcg 797
           |||||||
Sbjct: 747 aaagtcg 753



 Score =  105 bits (53), Expect = 3e-19
 Identities = 92/105 (87%)
 Strand = Plus / Plus

                                                                        
Query: 805  cagtggaactagcaaggtgaatataacagacgggcttagtggttgtcgtgtggctcctat 864
            ||||||||||||||||||||| ||||||||||||||||  | ||| |||||||| |||||
Sbjct: 1034 cagtggaactagcaaggtgaagataacagacgggcttacagtttgccgtgtggcgcctat 1093

                                                         
Query: 865  gactgatggtctccaactcgctcgccttgttacgcacaactaccc 909
            | || |||||||| |||||||||| || |||| |||||| |||||
Sbjct: 1094 gcctcatggtctcgaactcgctcgtctagttaagcacaattaccc 1138



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>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 50.1 bits (25), Expect = 0.017
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 963   ttttgttgttgttgctgccactttgtgca 991
             |||||||||||||| ||||||||||||||
Sbjct: 94400 ttttgttgttgttgttgccactttgtgca 94372



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>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence
          Length = 27905053

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 953      tgctgctatcttttgttgttgttgctg 979
                ||||||| |||||||||||||||||||
Sbjct: 18956842 tgctgctgtcttttgttgttgttgctg 18956816



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>gb|AC008365.4| Drosophila melanogaster clone BACR03N12, complete sequence
          Length = 166693

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 953 tgctgctatcttttgttgttgttgctg 979
           ||||||| |||||||||||||||||||
Sbjct: 716 tgctgctgtcttttgttgttgttgctg 690



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>gb|AC008200.5| Drosophila melanogaster clone BACR17P04, complete sequence
          Length = 163686

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 953   tgctgctatcttttgttgttgttgctg 979
             ||||||| |||||||||||||||||||
Sbjct: 99694 tgctgctgtcttttgttgttgttgctg 99668



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>emb|Z11840.1|DMHDGHOGD D.melanogaster hedgehog gene DNA
          Length = 19116

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 953   tgctgctatcttttgttgttgttgctg 979
             ||||||| |||||||||||||||||||
Sbjct: 13485 tgctgctgtcttttgttgttgttgctg 13511



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>gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, complete sequence
          Length = 131719

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 959   tatcttttgttgttgttgctgc 980
             ||||||||||||||||||||||
Sbjct: 26957 tatcttttgttgttgttgctgc 26936



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>gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, complete sequence
          Length = 169244

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 959   tatcttttgttgttgttgctgc 980
             ||||||||||||||||||||||
Sbjct: 77644 tatcttttgttgttgttgctgc 77665



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>emb|CR676820.2|CNS0FL74 Tetraodon nigroviridis full-length cDNA
          Length = 767

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 961 tcttttgttgttgttgctgcca 982
           ||||||||||||||||||||||
Sbjct: 397 tcttttgttgttgttgctgcca 376



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>emb|CR660102.2|CNS0F8B0 Tetraodon nigroviridis full-length cDNA
          Length = 721

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 961 tcttttgttgttgttgctgcca 982
           ||||||||||||||||||||||
Sbjct: 351 tcttttgttgttgttgctgcca 330



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>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence
          Length = 191041

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 958    ctatcttttgttgttgttgctg 979
              ||||||||||||||||||||||
Sbjct: 121987 ctatcttttgttgttgttgctg 122008



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>emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J13 on chromosome 1p13.1-13.3
             Contains a novel gene, complete sequence
          Length = 137490

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 675   tgaggggggcttttaaaaccttggat 700
             ||||||||||||||||| ||||||||
Sbjct: 80417 tgaggggggcttttaaagccttggat 80442



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>emb|AL645469.18| Mouse DNA sequence from clone RP23-340E18 on chromosome 11 Contains the
              Mylc2a gene for myosin light chain, regulatory A, the Gck
              gene for glucokinase, a novel gene, the gene for prenylated
              SNARE protein (Ykt6), the Camk2d gene for
              calcium/calmodulin-dependent protein kinase II delta and
              two CpG islands, complete sequence
          Length = 172356

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 959    tatcttttgttgttgttgctgc 980
              ||||||||||||||||||||||
Sbjct: 167306 tatcttttgttgttgttgctgc 167285



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>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete
              sequence
          Length = 190652

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 498    caactcaacagaaggaagctca 519
              ||||||||||||||||||||||
Sbjct: 133392 caactcaacagaaggaagctca 133371



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>ref|XM_639870.1| Dictyostelium discoideum AX4 hypothetical protein
           (DDBDRAFT_0168974) mRNA, complete cds
          Length = 1779

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 960 atcttttgttgttgttgctgc 980
           |||||||||||||||||||||
Sbjct: 509 atcttttgttgttgttgctgc 489



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>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence
          Length = 148464

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 963   ttttgttgttgttgctgccac 983
             |||||||||||||||||||||
Sbjct: 37774 ttttgttgttgttgctgccac 37754



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>gb|AC101800.8| Mus musculus chromosome 1, clone RP24-219K10, complete sequence
          Length = 177147

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 956   tgctatcttttgttgttgttg 976
             |||||||||||||||||||||
Sbjct: 72673 tgctatcttttgttgttgttg 72653



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>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 497    gcaactcaacagaaggaagct 517
              |||||||||||||||||||||
Sbjct: 195846 gcaactcaacagaaggaagct 195826



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>gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosome 6, complete sequence
          Length = 195925

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 578   tttgaacattttataccaaat 598
             |||||||||||||||||||||
Sbjct: 29199 tttgaacattttataccaaat 29219



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 960      atcttttgttgttgttgctgc 980
                |||||||||||||||||||||
Sbjct: 15606450 atcttttgttgttgttgctgc 15606430



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>gb|AC157950.2| Mus musculus BAC clone RP23-128A23 from chromosome 9, complete
            sequence
          Length = 202301

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 497  gcaactcaacagaaggaagct 517
            |||||||||||||||||||||
Sbjct: 1394 gcaactcaacagaaggaagct 1374



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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 1045    cataatcttaattatatactt 1065
               |||||||||||||||||||||
Sbjct: 1459714 cataatcttaattatatactt 1459694



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>gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 188768

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 956   tgctatcttttgttgttgttg 976
             |||||||||||||||||||||
Sbjct: 95732 tgctatcttttgttgttgttg 95712



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>emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on chromosome 1 Contains two
             novel genes, complete sequence
          Length = 159399

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 956   tgctatcttttgttgttgttg 976
             |||||||||||||||||||||
Sbjct: 16050 tgctatcttttgttgttgttg 16030



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>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4,
             complete sequence
          Length = 254733

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 960   atcttttgttgttgttgctgc 980
             |||||||||||||||||||||
Sbjct: 80089 atcttttgttgttgttgctgc 80109



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>gb|AC109912.10| Homo sapiens 3 BAC RP11-640G21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86114

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 959   tatcttttgttgttgttgctg 979
             |||||||||||||||||||||
Sbjct: 13741 tatcttttgttgttgttgctg 13721



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>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0644G05
          Length = 143119

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 960    atcttttgttgttgttgctgc 980
              |||||||||||||||||||||
Sbjct: 134010 atcttttgttgttgttgctgc 133990



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>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0035A24
          Length = 176446

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 960   atcttttgttgttgttgctgc 980
             |||||||||||||||||||||
Sbjct: 15137 atcttttgttgttgttgctgc 15117



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>gb|AC092855.39| Mus musculus strain C57BL/6J chromosome 3 clone rp23-49o17, complete
              sequence
          Length = 249205

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 523    ccttgctcttgaggctggcag 543
              |||||||||||||||||||||
Sbjct: 205409 ccttgctcttgaggctggcag 205389



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>emb|Y15435.1|KLPDC1GP Kluyveromyces lactis PDC1 gene, promoter region
          Length = 1176

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1045 cataatcttaattatatactt 1065
            |||||||||||||||||||||
Sbjct: 1054 cataatcttaattatatactt 1074



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>emb|AL049830.3|CNS00009 Human chromosome 14 DNA sequence BAC R-829H16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 214558

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 963    ttttgttgttgttgctgccac 983
              |||||||||||||||||||||
Sbjct: 171431 ttttgttgttgttgctgccac 171411



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>emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromosome 4, complete sequence
          Length = 241053

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 472    caagcagctaaagtgtcttga 492
              |||||||||||||||||||||
Sbjct: 232246 caagcagctaaagtgtcttga 232266



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>emb|AL645471.8| Mouse DNA sequence from clone RP23-456M3 on chromosome 11, complete
             sequence
          Length = 178361

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 941   ctactctactactgctgctat 961
             |||||||||||||||||||||
Sbjct: 18586 ctactctactactgctgctat 18566



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>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
             sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 472   caagcagctaaagtgtcttga 492
             |||||||||||||||||||||
Sbjct: 14571 caagcagctaaagtgtcttga 14591


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 190,168,490
Number of extensions: 10989356
Number of successful extensions: 337545
Number of sequences better than 10.0: 34
Number of HSP's gapped: 337543
Number of HSP's successfully gapped: 37
Length of query: 1084
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1061
Effective length of database: 18,503,978,556
Effective search space: 19632721247916
Effective search space used: 19632721247916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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