| Clone Name | FLbaf64j23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 529 bits (267), Expect = e-147 Identities = 567/667 (85%) Strand = Plus / Plus Query: 131 ctagttgatttaagtccagggcagctgcataagctagccgagttgatccatcgacaagaa 190 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 87 ctagttgatttaagtccagggcagttgcataagctagccgatctgatccatcgacaagaa 146 Query: 191 gtgcagaagtttcaagagctcaagttccagtcatacgcggagcaacaaaagtatctcaaa 250 || |||||| ||||||||||| ||||| | || || || |||||||||||||||||| Sbjct: 147 gtccagaagcttcaagagctcgagttcaactcgtatgcagagcaacaaaagtatctccgt 206 Query: 251 gacgccaaagaggcccgtgataaggtgtaccatatccttggcagtgcacaggacatgatt 310 |||||||| || ||||| ||||||||||| || ||||||| |||||||| ||||||||| Sbjct: 207 gacgccaatgatgcccgcgataaggtgtatcacatccttgacagtgcacgggacatgata 266 Query: 311 atggaggccgaggccgacaaagacgccaccaagcaagatattgctaaggatgtccatggg 370 | ||||||| || || || ||||||||||||||||||| ||||||||| ||| Sbjct: 267 gcacaaaccgaggctgagaaggatgccaccaagcaagatattggcaaggatgtctatgac 326 Query: 371 tactgcacgaaggccatcggaacatccctcaaattcatccgtagttacaacacccgtctc 430 |||||||| ||||||||||||| ||| ||| |||||||||| |||||||||||||||||| Sbjct: 327 tactgcaccaaggccatcggaatatctctccaattcatccggagttacaacacccgtctc 386 Query: 431 acctaccttgataaggtcaagacccacagtgatgatctcatcaagcagctaaagtgtctt 490 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || Sbjct: 387 acctaccttgacaagctcaagacccacagtgatgatctcatcaagcagctaaagttcctc 446 Query: 491 gatccggcaactcaacagaaggaagctcaatgccttgctcttgaggctggcaggtataag 550 ||| || || ||||||||||| || || ||||||| ||||||||||||| ||||||| Sbjct: 447 aatctagccacccaacagaaggaggcccagcgccttgcccttgaggctggcatgtataag 506 Query: 551 aaagctgcgcttgaggatgccgaaaagtttgaacattttataccaaatcaattctcagaa 610 ||||| |||| ||| ||||| |||||||| |||| ||| |||||||||||||||| || Sbjct: 507 aaagccacgctggagaatgccaaaaagtttcaacactttgcaccaaatcaattctcaaaa 566 Query: 611 tggctcaagggtaacaaaatcaagtttcaggatctggtggcagatgataccgccaagcct 670 |||||||||| |||||||||| |||| ||||||| ||| ||| ||| | |||| | Sbjct: 567 tggctcaaggaaaacaaaatcatgtttgaggatcttgtgcaagaaaatatgtcaaagctt 626 Query: 671 ggtttgaggggggcttttaaaaccttggatgatactcaaaagttaaaggcatatgacaat 730 ||||| ||||||||||| |||| ||||||||||| |||||| || ||| |||||||||| Sbjct: 627 ggttttaggggggctttcaaaaacttggatgatatccaaaagctacaggtatatgacaat 686 Query: 731 attattgcgggaagtggacatggaaaccccatggtgacttactcatttgaagatttggga 790 |||||||||| | ||||| ||||| | ||||||||||||||||||||| ||||||| Sbjct: 687 attattgcggaagcgggacaaggaaaatctgtggtgacttactcatttgaagctttggga 746 Query: 791 aaagtcg 797 ||||||| Sbjct: 747 aaagtcg 753 Score = 105 bits (53), Expect = 3e-19 Identities = 92/105 (87%) Strand = Plus / Plus Query: 805 cagtggaactagcaaggtgaatataacagacgggcttagtggttgtcgtgtggctcctat 864 ||||||||||||||||||||| |||||||||||||||| | ||| |||||||| ||||| Sbjct: 1034 cagtggaactagcaaggtgaagataacagacgggcttacagtttgccgtgtggcgcctat 1093 Query: 865 gactgatggtctccaactcgctcgccttgttacgcacaactaccc 909 | || |||||||| |||||||||| || |||| |||||| ||||| Sbjct: 1094 gcctcatggtctcgaactcgctcgtctagttaagcacaattaccc 1138
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218, complete sequence Length = 113213 Score = 50.1 bits (25), Expect = 0.017 Identities = 28/29 (96%) Strand = Plus / Minus Query: 963 ttttgttgttgttgctgccactttgtgca 991 |||||||||||||| |||||||||||||| Sbjct: 94400 ttttgttgttgttgttgccactttgtgca 94372
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Minus Query: 953 tgctgctatcttttgttgttgttgctg 979 ||||||| ||||||||||||||||||| Sbjct: 18956842 tgctgctgtcttttgttgttgttgctg 18956816
>gb|AC008365.4| Drosophila melanogaster clone BACR03N12, complete sequence Length = 166693 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Minus Query: 953 tgctgctatcttttgttgttgttgctg 979 ||||||| ||||||||||||||||||| Sbjct: 716 tgctgctgtcttttgttgttgttgctg 690
>gb|AC008200.5| Drosophila melanogaster clone BACR17P04, complete sequence Length = 163686 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Minus Query: 953 tgctgctatcttttgttgttgttgctg 979 ||||||| ||||||||||||||||||| Sbjct: 99694 tgctgctgtcttttgttgttgttgctg 99668
>emb|Z11840.1|DMHDGHOGD D.melanogaster hedgehog gene DNA Length = 19116 Score = 46.1 bits (23), Expect = 0.26 Identities = 26/27 (96%) Strand = Plus / Plus Query: 953 tgctgctatcttttgttgttgttgctg 979 ||||||| ||||||||||||||||||| Sbjct: 13485 tgctgctgtcttttgttgttgttgctg 13511
>gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, complete sequence Length = 131719 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 959 tatcttttgttgttgttgctgc 980 |||||||||||||||||||||| Sbjct: 26957 tatcttttgttgttgttgctgc 26936
>gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, complete sequence Length = 169244 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 959 tatcttttgttgttgttgctgc 980 |||||||||||||||||||||| Sbjct: 77644 tatcttttgttgttgttgctgc 77665
>emb|CR676820.2|CNS0FL74 Tetraodon nigroviridis full-length cDNA Length = 767 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 961 tcttttgttgttgttgctgcca 982 |||||||||||||||||||||| Sbjct: 397 tcttttgttgttgttgctgcca 376
>emb|CR660102.2|CNS0F8B0 Tetraodon nigroviridis full-length cDNA Length = 721 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 961 tcttttgttgttgttgctgcca 982 |||||||||||||||||||||| Sbjct: 351 tcttttgttgttgttgctgcca 330
>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence Length = 191041 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 958 ctatcttttgttgttgttgctg 979 |||||||||||||||||||||| Sbjct: 121987 ctatcttttgttgttgttgctg 122008
>emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J13 on chromosome 1p13.1-13.3 Contains a novel gene, complete sequence Length = 137490 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 675 tgaggggggcttttaaaaccttggat 700 ||||||||||||||||| |||||||| Sbjct: 80417 tgaggggggcttttaaagccttggat 80442
>emb|AL645469.18| Mouse DNA sequence from clone RP23-340E18 on chromosome 11 Contains the Mylc2a gene for myosin light chain, regulatory A, the Gck gene for glucokinase, a novel gene, the gene for prenylated SNARE protein (Ykt6), the Camk2d gene for calcium/calmodulin-dependent protein kinase II delta and two CpG islands, complete sequence Length = 172356 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 959 tatcttttgttgttgttgctgc 980 |||||||||||||||||||||| Sbjct: 167306 tatcttttgttgttgttgctgc 167285
>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete sequence Length = 190652 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 498 caactcaacagaaggaagctca 519 |||||||||||||||||||||| Sbjct: 133392 caactcaacagaaggaagctca 133371
>ref|XM_639870.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0168974) mRNA, complete cds Length = 1779 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 960 atcttttgttgttgttgctgc 980 ||||||||||||||||||||| Sbjct: 509 atcttttgttgttgttgctgc 489
>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence Length = 148464 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 963 ttttgttgttgttgctgccac 983 ||||||||||||||||||||| Sbjct: 37774 ttttgttgttgttgctgccac 37754
>gb|AC101800.8| Mus musculus chromosome 1, clone RP24-219K10, complete sequence Length = 177147 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 956 tgctatcttttgttgttgttg 976 ||||||||||||||||||||| Sbjct: 72673 tgctatcttttgttgttgttg 72653
>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence Length = 204108 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 497 gcaactcaacagaaggaagct 517 ||||||||||||||||||||| Sbjct: 195846 gcaactcaacagaaggaagct 195826
>gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosome 6, complete sequence Length = 195925 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 578 tttgaacattttataccaaat 598 ||||||||||||||||||||| Sbjct: 29199 tttgaacattttataccaaat 29219
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 960 atcttttgttgttgttgctgc 980 ||||||||||||||||||||| Sbjct: 15606450 atcttttgttgttgttgctgc 15606430
>gb|AC157950.2| Mus musculus BAC clone RP23-128A23 from chromosome 9, complete sequence Length = 202301 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 497 gcaactcaacagaaggaagct 517 ||||||||||||||||||||| Sbjct: 1394 gcaactcaacagaaggaagct 1374
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1045 cataatcttaattatatactt 1065 ||||||||||||||||||||| Sbjct: 1459714 cataatcttaattatatactt 1459694
>gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188768 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 956 tgctatcttttgttgttgttg 976 ||||||||||||||||||||| Sbjct: 95732 tgctatcttttgttgttgttg 95712
>emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on chromosome 1 Contains two novel genes, complete sequence Length = 159399 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 956 tgctatcttttgttgttgttg 976 ||||||||||||||||||||| Sbjct: 16050 tgctatcttttgttgttgttg 16030
>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence Length = 254733 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 960 atcttttgttgttgttgctgc 980 ||||||||||||||||||||| Sbjct: 80089 atcttttgttgttgttgctgc 80109
>gb|AC109912.10| Homo sapiens 3 BAC RP11-640G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 86114 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 959 tatcttttgttgttgttgctg 979 ||||||||||||||||||||| Sbjct: 13741 tatcttttgttgttgttgctg 13721
>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0644G05 Length = 143119 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 960 atcttttgttgttgttgctgc 980 ||||||||||||||||||||| Sbjct: 134010 atcttttgttgttgttgctgc 133990
>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24 Length = 176446 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 960 atcttttgttgttgttgctgc 980 ||||||||||||||||||||| Sbjct: 15137 atcttttgttgttgttgctgc 15117
>gb|AC092855.39| Mus musculus strain C57BL/6J chromosome 3 clone rp23-49o17, complete sequence Length = 249205 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 ccttgctcttgaggctggcag 543 ||||||||||||||||||||| Sbjct: 205409 ccttgctcttgaggctggcag 205389
>emb|Y15435.1|KLPDC1GP Kluyveromyces lactis PDC1 gene, promoter region Length = 1176 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1045 cataatcttaattatatactt 1065 ||||||||||||||||||||| Sbjct: 1054 cataatcttaattatatactt 1074
>emb|AL049830.3|CNS00009 Human chromosome 14 DNA sequence BAC R-829H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214558 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 963 ttttgttgttgttgctgccac 983 ||||||||||||||||||||| Sbjct: 171431 ttttgttgttgttgctgccac 171411
>emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromosome 4, complete sequence Length = 241053 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 caagcagctaaagtgtcttga 492 ||||||||||||||||||||| Sbjct: 232246 caagcagctaaagtgtcttga 232266
>emb|AL645471.8| Mouse DNA sequence from clone RP23-456M3 on chromosome 11, complete sequence Length = 178361 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 ctactctactactgctgctat 961 ||||||||||||||||||||| Sbjct: 18586 ctactctactactgctgctat 18566
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 caagcagctaaagtgtcttga 492 ||||||||||||||||||||| Sbjct: 14571 caagcagctaaagtgtcttga 14591 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 190,168,490 Number of extensions: 10989356 Number of successful extensions: 337545 Number of sequences better than 10.0: 34 Number of HSP's gapped: 337543 Number of HSP's successfully gapped: 37 Length of query: 1084 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1061 Effective length of database: 18,503,978,556 Effective search space: 19632721247916 Effective search space used: 19632721247916 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)