ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62c22 |
|---|---|
| Clone Library Name | barley_pub |
>P21561:YGY3_HALSQ Hypothetical 50.6 kDa protein in the 5'region of gyrA and gyrB -| Haloferax sp. (strain Aa 2.2) Length = 437 Score = 36.6 bits (83), Expect = 0.22 Identities = 53/199 (26%), Positives = 66/199 (33%), Gaps = 17/199 (8%) Frame = +1 Query: 28 GGTRPRQPPVAAQH--AHPSHLLRHCNAHPPVPWRLRVS*HEDPPARRVIPTPPRARPLL 201 G R RQPP + H HL + P + P RR PP AR +L Sbjct: 167 GRPRRRQPPRRGRSRGTHRRHLRQAPRPAVRGPDEDQAREFRGPRHRRE-RHPPTARDVL 225 Query: 202 RGDPEAGGHGLRPHQEPCAGDPMHPSEHAGETXXXXXXXXXVRADXXXXXXXXXXXXXPA 381 RG+P GHG H E G P AG VRA P Sbjct: 226 RGEP---GHGDGHHLEGRRGRPRPQGREAGR----GAHPPQVRARIYLAAGEARGLPEPR 278 Query: 382 PREAR----------HLGSIGPR-----*LAQEGQDWPCPCTKLAWLSGPGTAQPRDRQH 516 P R +G GPR A +G+D + P + + RD Sbjct: 279 PLGVRTVHRGGRLRGRVGQAGPRPQVPGDFAPQGED----SERRETPPRPHSRKRRDTGA 334 Query: 517 RHQGWRHRMRAVTYEADGL 573 H+ WR R R V + L Sbjct: 335 HHRHWRRRRRRVRHREGAL 353
>Q5G269:NETR_PONPY Neurotrypsin precursor - Pongo pygmaeus (Orangutan)| Length = 877 Score = 36.2 bits (82), Expect = 0.28 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Frame = +1 Query: 82 HLLRHCNAHPP-------VPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPEAGGHGLRP 240 H RH ++ PP +P + R PP P PPRA P R GH RP Sbjct: 31 HRHRHRHSPPPGLQYPYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHALQAGHTPRP 90 Query: 241 HQEPC-AGDP 267 H C AG+P Sbjct: 91 HPWGCPAGEP 100
>Q5G265:NETR_SAGLB Neurotrypsin precursor - Saguinus labiatus (Red-chested mustached| tamarin) Length = 875 Score = 35.8 bits (81), Expect = 0.37 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Frame = +1 Query: 91 RHCNAHPP-------VPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPEAGGHGLRPHQE 249 RH ++ PP +P R PP P PPRA P LR GH PH Sbjct: 32 RHRHSPPPGLLYPHYLPTEQRHRRTRPPPPLPRFPRPPRALPALRPHALQAGHTPEPHPR 91 Query: 250 PC-AGDP 267 C AG+P Sbjct: 92 GCPAGEP 98
>Q5G268:NETR_HYLLE Neurotrypsin precursor - Hylobates leucogenys (White-cheeked| gibbon) Length = 875 Score = 35.4 bits (80), Expect = 0.48 Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Frame = +1 Query: 37 RPRQPPVAAQHAHPSHLLRHCNAHPPVPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPE 216 RPR P H +P +L P + R PP P PPRA P R Sbjct: 32 RPRHSPPTGPH-YPYYL----------PTQQRPPRTRPPPPLPRFPRPPRALPAQRPHAL 80 Query: 217 AGGHGLRPHQEPC-AGDP 267 GH RPH C AG+P Sbjct: 81 QAGHTPRPHPWGCPAGEP 98
>Q5G271:NETR_PANTR Neurotrypsin precursor - Pan troglodytes (Chimpanzee)| Length = 875 Score = 34.7 bits (78), Expect = 0.82 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Frame = +1 Query: 88 LRHCNAHPP---------VPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPEAGGHGLRP 240 L H + H P +P + R PP P PPRA P R GH RP Sbjct: 29 LHHSHRHSPPPGPHYPYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHALQAGHTPRP 88 Query: 241 HQEPC-AGDP 267 H C AG+P Sbjct: 89 HPWGCPAGEP 98
>P56730:NETR_HUMAN Neurotrypsin precursor - Homo sapiens (Human)| Length = 875 Score = 34.7 bits (78), Expect = 0.82 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Frame = +1 Query: 88 LRHCNAHPP---------VPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPEAGGHGLRP 240 L H + H P +P + R PP P PPRA P R GH RP Sbjct: 29 LHHSHRHSPPAGPHYPYYLPTQQRPPTTRPPPPLPRFPRPPRALPAQRPHALQAGHTPRP 88 Query: 241 HQEPC-AGDP 267 H C AG+P Sbjct: 89 HPWGCPAGEP 98
>Q5G270:NETR_GORGO Neurotrypsin precursor - Gorilla gorilla gorilla (Lowland gorilla)| Length = 876 Score = 34.3 bits (77), Expect = 1.1 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Frame = +1 Query: 88 LRHCNAHPP----------VPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPEAGGHGLR 237 L H + H P +P + R PP P PPRA P R GH R Sbjct: 29 LHHSHRHSPPPGPHYPSYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHALQAGHTPR 88 Query: 238 PHQEPC-AGDP 267 PH C AG+P Sbjct: 89 PHPWGCPAGEP 99
>Q28640:HRG_RABIT Histidine-rich glycoprotein precursor - Oryctolagus cuniculus| (Rabbit) Length = 526 Score = 33.9 bits (76), Expect = 1.4 Identities = 28/85 (32%), Positives = 28/85 (32%), Gaps = 4/85 (4%) Frame = +1 Query: 31 GTRPRQPPVAAQHAH--PSHLLRHCNAHPPVPWRLRVS*HEDPPARRVIPTPPRARPLLR 204 G P PP H H P H HPP H PP PP P Sbjct: 332 GHHPHGPPPHGHHPHGPPPH------GHPP---------HGPPPRHPPHGPPPHGHPP-H 375 Query: 205 GDPEAGG--HGLRPHQEPCAGDPMH 273 G P G HG PH P G P H Sbjct: 376 GPPPHGHPPHGPPPHGHPPHGPPPH 400
>P70315:WASP_MOUSE Wiskott-Aldrich syndrome protein homolog - Mus musculus (Mouse)| Length = 520 Score = 33.5 bits (75), Expect = 1.8 Identities = 28/83 (33%), Positives = 32/83 (38%) Frame = +1 Query: 28 GGTRPRQPPVAAQHAHPSHLLRHCNAHPPVPWRLRVS*HEDPPARRVIPTPPRARPLLRG 207 GG +P +PPV + S L PPVP + PP R P P R P Sbjct: 339 GGGQPLRPPVVGSNKGRSGPL------PPVP----MGGAPPPPTPRGPPPPGRGGPPPPP 388 Query: 208 DPEAGGHGLRPHQEPCAGDPMHP 276 P G G P P AG P P Sbjct: 389 PPATGRSGPPPPPLPGAGGPPAP 411
>P57628:RNR_BUCAI Ribonuclease R - Buchnera aphidicola subsp. Acyrthosiphon pisum| (Acyrthosiphon pisum symbiotic bacterium) Length = 731 Score = 33.5 bits (75), Expect = 1.8 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 14/69 (20%) Frame = -1 Query: 1088 QRLHLSNTCLMH-QILKIVR-------------QTKTRNSDQKTQANDPKRCLHGDCNIA 951 Q ++ SN C + + LKIV+ +T+T D + K C+HGD +A Sbjct: 67 QVIYTSNRCYVAPESLKIVKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIHGDIILA 126 Query: 950 HLMNTKGRK 924 H++ T G++ Sbjct: 127 HIVETHGKR 135
>Q5G267:NETR_MACMU Neurotrypsin precursor - Macaca mulatta (Rhesus macaque)| Length = 875 Score = 33.5 bits (75), Expect = 1.8 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Frame = +1 Query: 91 RHCNAHPPVP-WRLRVS*HEDPPARRV------IPTPPRARPLLRGDPEAGGHGLRPHQE 249 RH ++ PP P + + H+ PP R P PPRA P R GH RPH Sbjct: 32 RHRHSPPPGPQYPYYLPTHQRPPRTRPPPPLPRFPRPPRALPAQRPHALQAGHTPRPHPW 91 Query: 250 PC 255 C Sbjct: 92 GC 93
>Q9SMU0:FDL18_ARATH Putative F-box/FBD/LRR-repeat protein At3g49030 - Arabidopsis| thaliana (Mouse-ear cress) Length = 443 Score = 33.1 bits (74), Expect = 2.4 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +2 Query: 539 ECVQSHMKLMVFYGFRGERG-ELSFLKFVLESARALTKLVIVFTKGSFTSMAEASSKVKP 715 EC+ H++ ++ G+ +RG E ++LE+AR L K + ++ + + Sbjct: 366 ECLLFHLEKFLWTGYEWQRGDEKEVATYILENARLLKKATFSTKRIDLENLEKRREMLNE 425 Query: 716 LFAAKWASKNCSLV 757 L + AS +C LV Sbjct: 426 LASVARASDSCHLV 439
>Q64ZU2:AROK_BACFR Shikimate kinase - Bacteroides fragilis| Length = 179 Score = 33.1 bits (74), Expect = 2.4 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -3 Query: 297 CFTSMFTWMHRISSTGLL-VRTKSMSSRLRIPTQQRPSSRRCGNDAARGRVLVSGNSKTP 121 CF +M+R+ +T L V K + SRLR+ QQRP + +D ++ + + P Sbjct: 83 CFFDNMEYMNRVGTTVFLDVDPKVLFSRLRVAKQQRPILQGKKDDELLDFIVQALEKRAP 142 Query: 120 RYRRVS 103 YR+ + Sbjct: 143 FYRQAN 148
>Q5LIQ7:AROK_BACFN Shikimate kinase - Bacteroides fragilis (strain ATCC 25285 / NCTC| 9343) Length = 179 Score = 33.1 bits (74), Expect = 2.4 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -3 Query: 297 CFTSMFTWMHRISSTGLL-VRTKSMSSRLRIPTQQRPSSRRCGNDAARGRVLVSGNSKTP 121 CF +M+R+ +T L V K + SRLR+ QQRP + +D ++ + + P Sbjct: 83 CFFDNMEYMNRVGTTVFLDVDPKVLFSRLRVAKQQRPILQGKKDDELLDFIVQALEKRAP 142 Query: 120 RYRRVS 103 YR+ + Sbjct: 143 FYRQAN 148
>Q10172:YDC9_SCHPO Uncharacterized protein C25G10.09c - Schizosaccharomyces pombe| (Fission yeast) Length = 1794 Score = 32.7 bits (73), Expect = 3.1 Identities = 28/93 (30%), Positives = 32/93 (34%), Gaps = 4/93 (4%) Frame = +1 Query: 1 AARKTRLLFGGTRPRQP----PVAAQHAHPSHLLRHCNAHPPVPWRLRVS*HEDPPARRV 168 AA LFGG P P PV Q A P + P P PP Sbjct: 1670 AAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQM------SAPTP----------PPPPMS 1713 Query: 169 IPTPPRARPLLRGDPEAGGHGLRPHQEPCAGDP 267 +P PP A P+ G P A L P +P Sbjct: 1714 VPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>Q96PX6:CC85A_HUMAN Coiled-coil domain-containing protein 85A - Homo sapiens (Human)| Length = 553 Score = 32.7 bits (73), Expect = 3.1 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Frame = +1 Query: 76 PSHLLRHCNAHPPVPWRLRVS*HEDPPARRVIPTPPRARPLLRGDPEAGGH---GLRPHQ 246 P H +H +A P P + R D P P+P +PL +G PE H G P Sbjct: 246 PEHS-KHRSASPEHPQKPRACGTPDRPKALKGPSPEHHKPLCKGSPEQQRHPHPGSSPET 304 Query: 247 EP---CAGDPMHPSEH 285 P +G P H +H Sbjct: 305 LPKHVLSGSPEHFQKH 320
>Q9Y566:SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 - Homo sapiens| (Human) Length = 2161 Score = 32.3 bits (72), Expect = 4.1 Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 4/100 (4%) Frame = +1 Query: 4 ARKTRLLFGGTRP---RQPPVAAQHAHPSHLLRHCNAHPPVPWRLRVS*H-EDPPARRVI 171 +R+ L G P PP H P H +AHPP P + +DPP R + Sbjct: 982 SREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLAL 1041 Query: 172 PTPPRARPLLRGDPEAGGHGLRPHQEPCAGDPMHPSEHAG 291 P R G G P P A P H G Sbjct: 1042 GPQPSLR---------GWRGGGPSPTPGAPSPSHHGSAGG 1072
>P79960:APJ_XENLA G-protein coupled receptor APJ homolog - Xenopus laevis (African| clawed frog) Length = 353 Score = 32.3 bits (72), Expect = 4.1 Identities = 19/49 (38%), Positives = 22/49 (44%) Frame = +3 Query: 888 PGVC*RLERCSEFSTFCVHQVSYVAVSVQAPFWIVGLCFLVRVPGFCLP 1034 P + R R +T C S V+ FWI GL L VPGF LP Sbjct: 169 PSLILRDTRVEGNNTICDLDFSGVSSKENENFWIGGLSILTTVPGFLLP 217
>Q9WV48:SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1 - Rattus norvegicus| (Rat) Length = 2167 Score = 31.6 bits (70), Expect = 7.0 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Frame = +1 Query: 49 PPVAAQHAHPSHLLRHCNAHPPVPWRLRVS*H-EDPPARRVIPTPPRARPLLRGDPEAGG 225 PP H P H +AHPP P + +DPP R + P R G P Sbjct: 1008 PPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTS 1067 Query: 226 HGLRPHQEPCAGDPMHPSE 282 P +G P++ Sbjct: 1068 GAPSPSHHSSSGGSSGPTQ 1086
>P02810:PRPC_HUMAN Salivary acidic proline-rich phosphoprotein 1/2 precursor - Homo| sapiens (Human) Length = 166 Score = 31.6 bits (70), Expect = 7.0 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 145 EDPPARRVIPTPPRARPLLRGDPEAGGHGLRPHQEPCAGDPMHPSEHAG 291 + PP + P PP+ RP +G P+ GG H P G P P + G Sbjct: 92 QGPPQQGGHPPPPQGRP--QGPPQQGG-----HPRPPRGRPQGPPQQGG 133
>P19158:IRA2_YEAST Inhibitory regulator protein IRA2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 3079 Score = 31.6 bits (70), Expect = 7.0 Identities = 22/84 (26%), Positives = 35/84 (41%) Frame = -1 Query: 1178 SVCQHSATQSAEIVSSNMTNVRPKQNK*TIQRLHLSNTCLMHQILKIVRQTKTRNSDQKT 999 S+C + ++S S+MT V P L L L +V + +RNSD Sbjct: 873 SLCSTTRSRSGSTSQSSMTPVSP---------LGLDTDICPMNTLSLVGSSTSRNSDNVN 923 Query: 998 QANDPKRCLHGDCNIAHLMNTKGR 927 N + L D ++HL+ + R Sbjct: 924 SLNSSPKNLSSDPYLSHLVAPRAR 947
>Q9CA04:FBL55_ARATH Putative F-box/LRR-repeat protein At3g49480 - Arabidopsis thaliana| (Mouse-ear cress) Length = 450 Score = 31.6 bits (70), Expect = 7.0 Identities = 25/74 (33%), Positives = 35/74 (47%) Frame = +2 Query: 74 IPPTFFAIATLTRLYLGVFEFPDTRTLPRAASFPHLRELGLCCVGILRREDMDFVLTRSP 253 +P +F+ TL RL L D +P S P LREL L CV + +L+ P Sbjct: 141 MPKSFYFCKTLERLTLSDKILVD---VPCQVSLPSLRELDLFCVVYKDEDSHVKLLSSCP 197 Query: 254 VLEILCIQVNMLVK 295 VL+ L + N V+ Sbjct: 198 VLKHLKVTRNRRVE 211
>Q0IAF4:UVRC_SYNS3 UvrABC system protein C - Synechococcus sp. (strain CC9311)| Length = 651 Score = 31.2 bits (69), Expect = 9.1 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -3 Query: 1209 LVKHDSSRMYLCLPAFSDTISRNSEF*HDQRQAKAK*INHTETAFEQHLSYASNSQDRQA 1030 LV+H+ + L S+ R + H QR+ KA I+ E L A SQ++QA Sbjct: 324 LVQHELPQQRLIAEWLSEQRERKVQVLHPQRRQKADLIDLVMRNAEFELGRARQSQEQQA 383 Query: 1029 NKNQEL 1012 N++L Sbjct: 384 LANEDL 389
>Q6NKX3:FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 - Arabidopsis thaliana| (Mouse-ear cress) Length = 448 Score = 31.2 bits (69), Expect = 9.1 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Frame = +2 Query: 533 AIECVQSHMKLMVFYGFRGERG-ELSFLKFVLESARALTKLVIV---FTKGSFTSMAEAS 700 A EC+ H++ ++ G+ +RG E ++LE+AR L K + + Sbjct: 366 APECLLFHLETFLWIGYEWQRGDEKEVATYILENARRLKKATFSTKRIGREKLEDFEKRR 425 Query: 701 SKVKPLFAAKWASKNCSLV 757 + L W S +C LV Sbjct: 426 EMLNELAIVLWDSNSCHLV 444 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 218,836,438 Number of extensions: 5056210 Number of successful extensions: 13995 Number of sequences better than 10.0: 24 Number of HSP's gapped: 13953 Number of HSP's successfully gapped: 24 Length of query: 406 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 290 Effective length of database: 68,868,219 Effective search space: 19971783510 Effective search space used: 19971783510 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
