ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf64i11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK240636.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J013047E01, full insert sequence Length = 3962 Score = 513 bits (259), Expect = e-142 Identities = 538/631 (85%) Strand = Plus / Plus Query: 1008 tatgcatttcaaagacagggaagactttgttttccattggttgttggatagaagaaccct 1067 ||||||| |||||||| || || | ||||| ||||||||||||||||| | || |||| Sbjct: 2376 tatgcatctcaaagactggcaaaaagttgttctccattggttgttggattcaggatccct 2435 Query: 1068 ctagtgcttcgcaaggcatgaaggcagatctagtcaaagttttgagcagaattgagaatc 1127 | || |||| ||||| ||||| |||||||||| ||||||||||||||| ||||||| Sbjct: 2436 gtggtacttcagaaggcctgaagacagatctagtagcagttttgagcagaatcgagaatc 2495 Query: 1128 agctcaaggatggagggttaagttgggcaaatgttctatatgttcacctctacatttcaa 1187 |||||||||| | ||||||| ||||| |||||||| ||||||||||||| |||||||| Sbjct: 2496 agctcaaggaagaagggttaggttggatgaatgttctgtatgttcacctcttcatttcaa 2555 Query: 1188 gcatgaaggaatttggattagccaatgaagtttatgtcagcttcatcacagaaaagaaat 1247 ||||||||||||||||||| ||||||||||||||||| ||||| || || ||| | |||| Sbjct: 2556 gcatgaaggaatttggattggccaatgaagtttatgtgagctttattactgaacaaaaat 2615 Query: 1248 gtcaccttggtgttccttcgcgcagtacaattgaattaccacttgttcaggctggtttag 1307 | | || ||||||||||| || |||||| ||||||| ||||| ||||||| |||||||| Sbjct: 2616 gccctctgggtgttccttcacgtagtacagttgaattgccactagttcaggttggtttag 2675 Query: 1308 gccatgcatatgtggaggttctagttgcaaatgatctggtcaaaagagttctgcatgtac 1367 |||||||||||||||| ||||||||| |||| || | ||||| |||||||| ||||||| Sbjct: 2676 gccatgcatatgtggaagttctagttacaaaggagcaagtcaagagagttctacatgtac 2735 Query: 1368 aaagcatctcatgctgggcccctagttgcatcggaccttatagccaggcaacactctatg 1427 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 2736 aaagcatttcatgctgggctcctagttgcatcggaccttatagccaggcaacacttcatg 2795 Query: 1428 gagagatactgtatatggctggtcagctcgggcttgacccccctacgatgaagctctgtc 1487 ||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 2796 gagagattctctatatggctggtcagctggggcttgatccccctacgatgaagctctgtc 2855 Query: 1488 ctggaggtgcaacagctcaactggaactagcactgcgaaatagtgaagctgttgctaatg 1547 |||| || |||| ||| |||| ||| | ||| | ||| | ||||||||||||||||||| Sbjct: 2856 ctgggggcccaacggctgaactagaattcgcattacgagacagtgaagctgttgctaatg 2915 Query: 1548 ccttcaagagctccatcttctcttcagcaatacactttttggtgtactgctctgcccacc 1607 |||| ||||||| || ||||| |||||||||||| |||||||||| ||||| ||| Sbjct: 2916 cctttggttgctccattttttcttcggcaatacactttctggtgtactgttctgcacact 2975 Query: 1608 tgacatccactgagaaggaagcagttgaaca 1638 |||| |||| ||| || ||| ||||||||| Sbjct: 2976 tgacgtccagtgaaaaagaacaagttgaaca 3006 Score = 81.8 bits (41), Expect = 1e-11 Identities = 125/153 (81%) Strand = Plus / Plus Query: 795 ctgattccattgcttcagtcggaattcttcatccgctggcatttcatgttgagcccaagc 854 |||||||||| ||| |||| ||||||||||| ||| | ||||||| |||| | ||||| Sbjct: 2160 ctgattccatcgctccagtaggaattcttcacccgttaaaatttcatcttgaacacaagc 2219 Query: 855 caggttcatctagcagcattggggatggtgccattgctgaagagaattctagttgcttgt 914 || ||| | | ||| | |||| ||| |||| ||||| ||||||||||||||| |||| Sbjct: 2220 caaattcttttggcaccgttggtgatagtgctattgcccaagagaattctagttatttgt 2279 Query: 915 acgaagtaaatggagctattgcacacactgatg 947 | |||||| |||||||||||||||||| ||||| Sbjct: 2280 atgaagtagatggagctattgcacacagtgatg 2312 Score = 75.8 bits (38), Expect = 7e-10 Identities = 245/314 (78%) Strand = Plus / Plus Query: 1868 tggagcccacaatactctggcttgcacgactcatgctgcctggtcaacacggttgctggg 1927 |||||| |||||||||||| | || | || |||||||||| ||| |||| | | |||| Sbjct: 3224 tggagcgcacaatactctgacctggatgattcatgctgccaggtacacacaatcggtggg 3283 Query: 1928 aagatttgctctgctgtggtttcagtcacgaatgacatcgcgtcaaagatctgttccagc 1987 || |||||||||||||| ||||||||||| ||||| || || | || |||||||| | Sbjct: 3284 aaaatttgctctgctgttgtttcagtcacaaatgatattgcattgaaaatctgttctaca 3343 Query: 1988 accggacaatcacacctctcaaaggagcatttgaaagccatggccagattctgcgctttc 2047 || | |||| | ||| ||| |||||||||||||||| |||| ||||| || || ||| Sbjct: 3344 actgaacaactataccactcggaggagcatttgaaagctttggctagattttgtgcattc 3403 Query: 2048 cagctcgcaaggaccctggcagacaacggcttcacctgggacgacgtaacgatgctgagg 2107 ||||| || | || ||| ||| || ||||| |||||||| || |||||||| | || Sbjct: 3404 cagcttgctaagattctgatagataatggcttttcctgggacaacctaacgatgttaaga 3463 Query: 2108 ttctactattcggtgaagcacgcggtggcagcggacgtgatgtcccgtgcgttctccaag 2167 ||||||||||| || ||||| | ||| | ||||| ||||||||||||| || || || Sbjct: 3464 ttctactattcagtagagcacccagtgactgcggatgtgatgtcccgtgtattttctgag 3523 Query: 2168 gcattcaccgagct 2181 |||||| ||||||| Sbjct: 3524 gcattcgccgagct 3537 Score = 67.9 bits (34), Expect = 2e-07 Identities = 46/50 (92%) Strand = Plus / Plus Query: 1721 gatcttccaaaaggagcatgtgtggagataaaaccaacattgtacgtccc 1770 ||||||||||||||||||| |||||||||||||||| |||||| ||||| Sbjct: 3089 gatcttccaaaaggagcatacgtggagataaaaccaatattgtatgtccc 3138
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 339 bits (171), Expect = 3e-89 Identities = 294/335 (87%) Strand = Plus / Plus Query: 1081 aggcatgaaggcagatctagtcaaagttttgagcagaattgagaatcagctcaaggatgg 1140 |||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||| | Sbjct: 34670300 aggcctgaagacagatctagtagcagttttgagcagaatcgagaatcagctcaaggaaga 34670359 Query: 1141 agggttaagttgggcaaatgttctatatgttcacctctacatttcaagcatgaaggaatt 1200 ||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 34670360 agggttaggttggatgaatgttctgtatgttcacctcttcatttcaagcatgaaggaatt 34670419 Query: 1201 tggattagccaatgaagtttatgtcagcttcatcacagaaaagaaatgtcaccttggtgt 1260 |||||| ||||||||||||||||| ||||| || || ||| | ||||| | || ||||| Sbjct: 34670420 tggattggccaatgaagtttatgtgagctttattactgaacaaaaatgccctctgggtgt 34670479 Query: 1261 tccttcgcgcagtacaattgaattaccacttgttcaggctggtttaggccatgcatatgt 1320 |||||| || |||||| ||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct: 34670480 tccttcacgtagtacagttgaattgccactagttcaggttggtttaggccatgcatatgt 34670539 Query: 1321 ggaggttctagttgcaaatgatctggtcaaaagagttctgcatgtacaaagcatctcatg 1380 ||| ||||||||| |||| || | ||||| |||||||| |||||||||||||| ||||| Sbjct: 34670540 ggaagttctagttacaaaggagcaagtcaagagagttctacatgtacaaagcatttcatg 34670599 Query: 1381 ctgggcccctagttgcatcggaccttatagccagg 1415 |||||| |||||||||||||||||||||||||||| Sbjct: 34670600 ctgggctcctagttgcatcggaccttatagccagg 34670634 Score = 170 bits (86), Expect = 2e-38 Identities = 191/226 (84%) Strand = Plus / Plus Query: 1413 aggcaacactctatggagagatactgtatatggctggtcagctcgggcttgaccccccta 1472 |||||||||| |||||||||| || ||||||||||||||||| |||||||| ||||||| Sbjct: 34670814 aggcaacacttcatggagagattctctatatggctggtcagctggggcttgatcccccta 34670873 Query: 1473 cgatgaagctctgtcctggaggtgcaacagctcaactggaactagcactgcgaaatagtg 1532 ||||||||||||||||||| || |||| ||| |||| ||| | ||| | ||||| |||| Sbjct: 34670874 cgatgaagctctgtcctgggggcccaacggctgaactagaattcgcattacgaaacagtg 34670933 Query: 1533 aagctgttgctaatgccttcaagagctccatcttctcttcagcaatacactttttggtgt 1592 ||||||||||||||||||| ||||||| || ||||| |||||||||||| |||||| Sbjct: 34670934 aagctgttgctaatgcctttggttgctccattttttcttcggcaatacactttctggtgt 34670993 Query: 1593 actgctctgcccacctgacatccactgagaaggaagcagttgaaca 1638 |||| ||||| ||| |||| |||| ||| || ||| ||||||||| Sbjct: 34670994 actgttctgcacacttgacgtccagtgaaaaagaacaagttgaaca 34671039 Score = 133 bits (67), Expect = 4e-27 Identities = 166/199 (83%) Strand = Plus / Plus Query: 749 aatgcaaggattgtccttgatgattttgaagtgatactccactctgctgattccattgct 808 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 34669834 aatgcaagaattgttcttgatgattttgaagttatactccactcgcctgattccatcgct 34669893 Query: 809 tcagtcggaattcttcatccgctggcatttcatgttgagcccaagccaggttcatctagc 868 |||| ||||||||||| ||| | ||||||| |||| | ||||||| ||| | | || Sbjct: 34669894 ccagtaggaattcttcacccgttaaaatttcatcttgaacacaagccaaattcttttggc 34669953 Query: 869 agcattggggatggtgccattgctgaagagaattctagttgcttgtacgaagtaaatgga 928 | | |||| ||| |||| ||||| ||||||||||||||| ||||| |||||| ||||| Sbjct: 34669954 accgttggtgatagtgctattgcccaagagaattctagttatttgtatgaagtagatgga 34670013 Query: 929 gctattgcacacactgatg 947 ||||||||||||| ||||| Sbjct: 34670014 gctattgcacacagtgatg 34670032 Score = 125 bits (63), Expect = 9e-25 Identities = 162/195 (83%) Strand = Plus / Plus Query: 365 ggcgatgaggtggaggacatgttcgccctgttgagcgaggtgaagcggcgaatcccgtcc 424 |||||||| |||||||| ||||| || || ||||||||||| || ||| |||||| ||| Sbjct: 34668720 ggcgatgaagtggaggatatgtttgcgctcttgagcgaggttaaaaggcaaatcccatcc 34668779 Query: 425 attggcgccgtgtcttcgggcgccatcgcctccgattaccagaggctccgggtcgagagc 484 || || |||||||| |||||||| || || ||||| |||||||| || || ||||| Sbjct: 34668780 atcactgcagtgtcttcaggcgccattgcgtctgattatcagaggcttcgtgttgagagt 34668839 Query: 485 gtctgctcgaggctgggcctggtctcgctggcttacatgtggaggcaggatcagactctg 544 |||||||| ||| |||||||||| |||||||| || |||||| ||||||||||||| || Sbjct: 34668840 gtctgctcaaggttgggcctggtatcgctggcgtatttgtggaagcaggatcagactttg 34668899 Query: 545 cttcttgaagaaatg 559 |||||||| |||||| Sbjct: 34668900 cttcttgatgaaatg 34668914 Score = 97.6 bits (49), Expect = 2e-16 Identities = 67/73 (91%) Strand = Plus / Plus Query: 110 gtggtggcgctggtgagcggcggcaaggacagctgcttctccatgatgcgctgcctcgac 169 ||||||||||| || |||||||||||||||||||||||| |||||||||| ||||| ||| Sbjct: 34668145 gtggtggcgctcgtcagcggcggcaaggacagctgcttcgccatgatgcgatgcctggac 34668204 Query: 170 tacggccacaagg 182 || |||||||||| Sbjct: 34668205 tatggccacaagg 34668217 Score = 97.6 bits (49), Expect = 2e-16 Identities = 64/69 (92%) Strand = Plus / Plus Query: 676 gagttttggaatcaatgtccgtggtgaaggtggagagtacgaaacactaactcttgactg 735 ||||| ||||||||||||| ||||||||||||| || || |||||||||||||||||||| Sbjct: 34669522 gagttatggaatcaatgtctgtggtgaaggtggcgaatatgaaacactaactcttgactg 34669581 Query: 736 ccctctatt 744 ||||||||| Sbjct: 34669582 ccctctatt 34669590 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 599 gcaatggggttgaaaccttctgtccacttggggaaagaactgtctgaactgaagagccat 658 ||||||||| | |||||||||| ||||| |||||||||||| ||||||| ||| | ||| Sbjct: 34669169 gcaatggggctcaaaccttctgctcacttagggaaagaactggctgaacttaagtgtcat 34669228 Query: 659 ctgcttcaaatgaatgag 676 ||||| ||| |||||||| Sbjct: 34669229 ctgctccaactgaatgag 34669246 Score = 63.9 bits (32), Expect = 3e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 191 ctggccaacctcgtccccctcgacgacgccgtcgatgagctcgacagctacatgta 246 |||||||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 34668308 ctggccaacctcatccccgaagatgacgccgtcgacgagctcgacagctacatgta 34668363 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 1868 tggagcccacaatactctggcttgcacgactcatgctgcctggtcaacacggttgctggg 1927 |||||| |||||||||||| | || | || |||||||||| ||| |||| | | |||| Sbjct: 34671382 tggagcgcacaatactctgacctggatgattcatgctgccaggtgcacacaatcggtggg 34671441 Query: 1928 aagatttgctctgctgtggtttcagtcacgaatga 1962 || |||||||||||||| ||||||||||| ||||| Sbjct: 34671442 aaaatttgctctgctgttgtttcagtcacaaatga 34671476
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 339 bits (171), Expect = 3e-89 Identities = 294/335 (87%) Strand = Plus / Plus Query: 1081 aggcatgaaggcagatctagtcaaagttttgagcagaattgagaatcagctcaaggatgg 1140 |||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||| | Sbjct: 27251 aggcctgaagacagatctagtagcagttttgagcagaatcgagaatcagctcaaggaaga 27310 Query: 1141 agggttaagttgggcaaatgttctatatgttcacctctacatttcaagcatgaaggaatt 1200 ||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 27311 agggttaggttggatgaatgttctgtatgttcacctcttcatttcaagcatgaaggaatt 27370 Query: 1201 tggattagccaatgaagtttatgtcagcttcatcacagaaaagaaatgtcaccttggtgt 1260 |||||| ||||||||||||||||| ||||| || || ||| | ||||| | || ||||| Sbjct: 27371 tggattggccaatgaagtttatgtgagctttattactgaacaaaaatgccctctgggtgt 27430 Query: 1261 tccttcgcgcagtacaattgaattaccacttgttcaggctggtttaggccatgcatatgt 1320 |||||| || |||||| ||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct: 27431 tccttcacgtagtacagttgaattgccactagttcaggttggtttaggccatgcatatgt 27490 Query: 1321 ggaggttctagttgcaaatgatctggtcaaaagagttctgcatgtacaaagcatctcatg 1380 ||| ||||||||| |||| || | ||||| |||||||| |||||||||||||| ||||| Sbjct: 27491 ggaagttctagttacaaaggagcaagtcaagagagttctacatgtacaaagcatttcatg 27550 Query: 1381 ctgggcccctagttgcatcggaccttatagccagg 1415 |||||| |||||||||||||||||||||||||||| Sbjct: 27551 ctgggctcctagttgcatcggaccttatagccagg 27585 Score = 170 bits (86), Expect = 2e-38 Identities = 191/226 (84%) Strand = Plus / Plus Query: 1413 aggcaacactctatggagagatactgtatatggctggtcagctcgggcttgaccccccta 1472 |||||||||| |||||||||| || ||||||||||||||||| |||||||| ||||||| Sbjct: 27765 aggcaacacttcatggagagattctctatatggctggtcagctggggcttgatcccccta 27824 Query: 1473 cgatgaagctctgtcctggaggtgcaacagctcaactggaactagcactgcgaaatagtg 1532 ||||||||||||||||||| || |||| ||| |||| ||| | ||| | ||||| |||| Sbjct: 27825 cgatgaagctctgtcctgggggcccaacggctgaactagaattcgcattacgaaacagtg 27884 Query: 1533 aagctgttgctaatgccttcaagagctccatcttctcttcagcaatacactttttggtgt 1592 ||||||||||||||||||| ||||||| || ||||| |||||||||||| |||||| Sbjct: 27885 aagctgttgctaatgcctttggttgctccattttttcttcggcaatacactttctggtgt 27944 Query: 1593 actgctctgcccacctgacatccactgagaaggaagcagttgaaca 1638 |||| ||||| ||| |||| |||| ||| || ||| ||||||||| Sbjct: 27945 actgttctgcacacttgacgtccagtgaaaaagaacaagttgaaca 27990 Score = 133 bits (67), Expect = 4e-27 Identities = 166/199 (83%) Strand = Plus / Plus Query: 749 aatgcaaggattgtccttgatgattttgaagtgatactccactctgctgattccattgct 808 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 26785 aatgcaagaattgttcttgatgattttgaagttatactccactcgcctgattccatcgct 26844 Query: 809 tcagtcggaattcttcatccgctggcatttcatgttgagcccaagccaggttcatctagc 868 |||| ||||||||||| ||| | ||||||| |||| | ||||||| ||| | | || Sbjct: 26845 ccagtaggaattcttcacccgttaaaatttcatcttgaacacaagccaaattcttttggc 26904 Query: 869 agcattggggatggtgccattgctgaagagaattctagttgcttgtacgaagtaaatgga 928 | | |||| ||| |||| ||||| ||||||||||||||| ||||| |||||| ||||| Sbjct: 26905 accgttggtgatagtgctattgcccaagagaattctagttatttgtatgaagtagatgga 26964 Query: 929 gctattgcacacactgatg 947 ||||||||||||| ||||| Sbjct: 26965 gctattgcacacagtgatg 26983 Score = 125 bits (63), Expect = 9e-25 Identities = 162/195 (83%) Strand = Plus / Plus Query: 365 ggcgatgaggtggaggacatgttcgccctgttgagcgaggtgaagcggcgaatcccgtcc 424 |||||||| |||||||| ||||| || || ||||||||||| || ||| |||||| ||| Sbjct: 25671 ggcgatgaagtggaggatatgtttgcgctcttgagcgaggttaaaaggcaaatcccatcc 25730 Query: 425 attggcgccgtgtcttcgggcgccatcgcctccgattaccagaggctccgggtcgagagc 484 || || |||||||| |||||||| || || ||||| |||||||| || || ||||| Sbjct: 25731 atcactgcagtgtcttcaggcgccattgcgtctgattatcagaggcttcgtgttgagagt 25790 Query: 485 gtctgctcgaggctgggcctggtctcgctggcttacatgtggaggcaggatcagactctg 544 |||||||| ||| |||||||||| |||||||| || |||||| ||||||||||||| || Sbjct: 25791 gtctgctcaaggttgggcctggtatcgctggcgtatttgtggaagcaggatcagactttg 25850 Query: 545 cttcttgaagaaatg 559 |||||||| |||||| Sbjct: 25851 cttcttgatgaaatg 25865 Score = 97.6 bits (49), Expect = 2e-16 Identities = 67/73 (91%) Strand = Plus / Plus Query: 110 gtggtggcgctggtgagcggcggcaaggacagctgcttctccatgatgcgctgcctcgac 169 ||||||||||| || |||||||||||||||||||||||| |||||||||| ||||| ||| Sbjct: 25096 gtggtggcgctcgtcagcggcggcaaggacagctgcttcgccatgatgcgatgcctggac 25155 Query: 170 tacggccacaagg 182 || |||||||||| Sbjct: 25156 tatggccacaagg 25168 Score = 97.6 bits (49), Expect = 2e-16 Identities = 64/69 (92%) Strand = Plus / Plus Query: 676 gagttttggaatcaatgtccgtggtgaaggtggagagtacgaaacactaactcttgactg 735 ||||| ||||||||||||| ||||||||||||| || || |||||||||||||||||||| Sbjct: 26473 gagttatggaatcaatgtctgtggtgaaggtggcgaatatgaaacactaactcttgactg 26532 Query: 736 ccctctatt 744 ||||||||| Sbjct: 26533 ccctctatt 26541 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 599 gcaatggggttgaaaccttctgtccacttggggaaagaactgtctgaactgaagagccat 658 ||||||||| | |||||||||| ||||| |||||||||||| ||||||| ||| | ||| Sbjct: 26120 gcaatggggctcaaaccttctgctcacttagggaaagaactggctgaacttaagtgtcat 26179 Query: 659 ctgcttcaaatgaatgag 676 ||||| ||| |||||||| Sbjct: 26180 ctgctccaactgaatgag 26197 Score = 63.9 bits (32), Expect = 3e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 191 ctggccaacctcgtccccctcgacgacgccgtcgatgagctcgacagctacatgta 246 |||||||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 25259 ctggccaacctcatccccgaagatgacgccgtcgacgagctcgacagctacatgta 25314 Score = 61.9 bits (31), Expect = 1e-05 Identities = 79/95 (83%) Strand = Plus / Plus Query: 1868 tggagcccacaatactctggcttgcacgactcatgctgcctggtcaacacggttgctggg 1927 |||||| |||||||||||| | || | || |||||||||| ||| |||| | | |||| Sbjct: 28333 tggagcgcacaatactctgacctggatgattcatgctgccaggtgcacacaatcggtggg 28392 Query: 1928 aagatttgctctgctgtggtttcagtcacgaatga 1962 || |||||||||||||| ||||||||||| ||||| Sbjct: 28393 aaaatttgctctgctgttgtttcagtcacaaatga 28427
>gb|AY105551.1| Zea mays PCO076380 mRNA sequence Length = 940 Score = 77.8 bits (39), Expect = 2e-10 Identities = 81/95 (85%) Strand = Plus / Plus Query: 2027 atggccagattctgcgctttccagctcgcaaggaccctggcagacaacggcttcacctgg 2086 ||||| |||||||| ||||||||| |||| | |||||||||||||||| | || ||||| Sbjct: 332 atggctagattctgtgctttccagatcgcgaagaccctggcagacaacagattttcctgg 391 Query: 2087 gacgacgtaacgatgctgaggttctactattcggt 2121 ||| |||||||||| ||||| ||||||| ||||| Sbjct: 392 gacagcgtaacgatgttgaggctctactactcggt 426
>dbj|AK227077.1| Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-67-D23 Length = 2576 Score = 65.9 bits (33), Expect = 7e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 1348 caaaagagttctgcatgtacaaagcatctcatgctgggcccctagttgcatcggacctta 1407 |||||||||||| ||||||||||| || || |||||||| ||||| ||||| |||||||| Sbjct: 1283 caaaagagttctccatgtacaaagtatatcttgctgggcacctagctgcattggacctta 1342 Query: 1408 tagccaggc 1416 || ||||| Sbjct: 1343 cagtcaggc 1351
>ref|NM_111319.2| Arabidopsis thaliana endoribonuclease (AT3G04480) mRNA, complete cds Length = 2583 Score = 65.9 bits (33), Expect = 7e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 1348 caaaagagttctgcatgtacaaagcatctcatgctgggcccctagttgcatcggacctta 1407 |||||||||||| ||||||||||| || || |||||||| ||||| ||||| |||||||| Sbjct: 1301 caaaagagttctccatgtacaaagtatatcttgctgggcacctagctgcattggacctta 1360 Query: 1408 tagccaggc 1416 || ||||| Sbjct: 1361 cagtcaggc 1369
>emb|CT990637.2| S.lycopersicum DNA sequence from clone LE_HBa-36C23 on chromosome 4, complete sequence Length = 114152 Score = 63.9 bits (32), Expect = 3e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 682 tggaatcaatgtccgtggtgaaggtggagagtacgaaacactaactcttgactgccctct 741 |||||| |||||| |||||||||||||||| || |||||| |||| |||| |||||||| Sbjct: 33622 tggaataaatgtctgtggtgaaggtggagaatatgaaacattaacgtttgattgccctct 33563 Query: 742 attt 745 |||| Sbjct: 33562 attt 33559
>gb|AC022287.9|ATAC022287 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence Length = 71616 Score = 63.9 bits (32), Expect = 3e-06 Identities = 53/60 (88%) Strand = Plus / Minus Query: 1348 caaaagagttctgcatgtacaaagcatctcatgctgggcccctagttgcatcggacctta 1407 |||||||||||| ||||||||||| || || |||||||| ||||| ||||| |||||||| Sbjct: 40001 caaaagagttctccatgtacaaagtatatcttgctgggcacctagctgcattggacctta 39942
>ref|XM_321119.2| Anopheles gambiae str. PEST ENSANGP00000018453 (ENSANGG00000015964), partial mRNA Length = 2595 Score = 58.0 bits (29), Expect = 2e-04 Identities = 32/33 (96%) Strand = Plus / Plus Query: 110 gtggtggcgctggtgagcggcggcaaggacagc 142 |||||||||||||| |||||||||||||||||| Sbjct: 7 gtggtggcgctggtcagcggcggcaaggacagc 39 Score = 46.1 bits (23), Expect = 0.64 Identities = 35/39 (89%) Strand = Plus / Plus Query: 227 gagctcgacagctacatgtaccagaccgtcgggcaccag 265 ||||| |||||||||||||||||||| || || |||||| Sbjct: 118 gagctggacagctacatgtaccagacggtgggccaccag 156
>ref|XM_680520.1| PREDICTED: Danio rerio similar to CG1578-PA (LOC572790), partial mRNA Length = 395 Score = 50.1 bits (25), Expect = 0.041 Identities = 28/29 (96%) Strand = Plus / Plus Query: 224 gatgagctcgacagctacatgtaccagac 252 |||||||| |||||||||||||||||||| Sbjct: 124 gatgagctggacagctacatgtaccagac 152
>ref|NM_001013290.1| Danio rerio zgc:110758 (zgc:110758), mRNA gb|BC090272.1| Danio rerio zgc:110758, mRNA (cDNA clone MGC:110758 IMAGE:6912561), complete cds Length = 1310 Score = 50.1 bits (25), Expect = 0.041 Identities = 28/29 (96%) Strand = Plus / Plus Query: 224 gatgagctcgacagctacatgtaccagac 252 |||||||| |||||||||||||||||||| Sbjct: 211 gatgagctggacagctacatgtaccagac 239
>ref|XR_021944.1| PREDICTED: Pan troglodytes similar to Ring finger protein 18 (LOC748919), mRNA Length = 2095 Score = 46.1 bits (23), Expect = 0.64 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 agccatctgcttcaaatgaatgagagttttg 683 |||||||||||||||||||||| ||||||| Sbjct: 336 agccatctgcttcaaatgaatgttagttttg 306
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 46.1 bits (23), Expect = 0.64 Identities = 59/71 (83%) Strand = Plus / Minus Query: 128 ggcggcaaggacagctgcttctccatgatgcgctgcctcgactacggccacaaggtcgtc 187 ||||||||||||||||||| | |||||||| ||| ||| | | |||||| | ||||| Sbjct: 11709293 ggcggcaaggacagctgctacaacatgatgcagtgcgtcgccgagggccacgaaatcgtc 11709234 Query: 188 gccctggccaa 198 ||||||||||| Sbjct: 11709233 gccctggccaa 11709223
>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence Length = 181148 Score = 46.1 bits (23), Expect = 0.64 Identities = 59/71 (83%) Strand = Plus / Minus Query: 128 ggcggcaaggacagctgcttctccatgatgcgctgcctcgactacggccacaaggtcgtc 187 ||||||||||||||||||| | |||||||| ||| ||| | | |||||| | ||||| Sbjct: 106671 ggcggcaaggacagctgctacaacatgatgcagtgcgtcgccgagggccacgaaatcgtc 106612 Query: 188 gccctggccaa 198 ||||||||||| Sbjct: 106611 gccctggccaa 106601
>gb|AC141900.3| Mus musculus BAC clone RP23-47I1 from chromosome 12, complete sequence Length = 145868 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2557 ttttggtttatttattattatat 2579 ||||||||||||||||||||||| Sbjct: 88130 ttttggtttatttattattatat 88108
>ref|NM_132521.2| Drosophila melanogaster CG1578-RA (CG1578), mRNA Length = 3648 Score = 46.1 bits (23), Expect = 0.64 Identities = 59/71 (83%) Strand = Plus / Plus Query: 128 ggcggcaaggacagctgcttctccatgatgcgctgcctcgactacggccacaaggtcgtc 187 ||||||||||||||||||| | |||||||| ||| ||| | | |||||| | ||||| Sbjct: 391 ggcggcaaggacagctgctacaacatgatgcagtgcgtcgccgagggccacgaaatcgtc 450 Query: 188 gccctggccaa 198 ||||||||||| Sbjct: 451 gccctggccaa 461
>dbj|AB227465.1| Aspergillus oryzae cDNA, contig sequence: AoEST4332 Length = 1145 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1111 gagcagaattgagaatcagctca 1133 ||||||||||||||||||||||| Sbjct: 556 gagcagaattgagaatcagctca 578
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1111 gagcagaattgagaatcagctca 1133 ||||||||||||||||||||||| Sbjct: 3836615 gagcagaattgagaatcagctca 3836637
>gb|AY119604.1| Drosophila melanogaster LD28359 full insert cDNA Length = 3657 Score = 46.1 bits (23), Expect = 0.64 Identities = 59/71 (83%) Strand = Plus / Plus Query: 128 ggcggcaaggacagctgcttctccatgatgcgctgcctcgactacggccacaaggtcgtc 187 ||||||||||||||||||| | |||||||| ||| ||| | | |||||| | ||||| Sbjct: 382 ggcggcaaggacagctgctacaacatgatgcagtgcgtcgccgagggccacgaaatcgtc 441 Query: 188 gccctggccaa 198 ||||||||||| Sbjct: 442 gccctggccaa 452
>emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chromosome 13, complete sequence Length = 228266 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2343 cagcttccaaagctcaagtcaag 2365 ||||||||||||||||||||||| Sbjct: 183016 cagcttccaaagctcaagtcaag 183038
>emb|BX682542.5| Mouse DNA sequence from clone RP23-125N5 on chromosome 4, complete sequence Length = 144906 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 612 aaccttctgtccacttggggaaa 634 ||||||||||||||||||||||| Sbjct: 31653 aaccttctgtccacttggggaaa 31675
>gb|AC175538.1| Mus musculus BAC clone RP24-476A4 from chromosome 13, complete sequence Length = 191199 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2343 cagcttccaaagctcaagtcaag 2365 ||||||||||||||||||||||| Sbjct: 63020 cagcttccaaagctcaagtcaag 63042
>gb|BT021411.1| Drosophila melanogaster LD05643 full insert cDNA Length = 3234 Score = 46.1 bits (23), Expect = 0.64 Identities = 59/71 (83%) Strand = Plus / Plus Query: 128 ggcggcaaggacagctgcttctccatgatgcgctgcctcgactacggccacaaggtcgtc 187 ||||||||||||||||||| | |||||||| ||| ||| | | |||||| | ||||| Sbjct: 391 ggcggcaaggacagctgctacaacatgatgcagtgcgtcgccgagggccacgaaatcgtc 450 Query: 188 gccctggccaa 198 ||||||||||| Sbjct: 451 gccctggccaa 461
>emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chromosome 17, complete sequence Length = 199300 Score = 46.1 bits (23), Expect = 0.64 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1349 aaaagagttctgcatgtacaaag 1371 ||||||||||||||||||||||| Sbjct: 103028 aaaagagttctgcatgtacaaag 103006
>ref|XM_001183997.1| PREDICTED: Strongylocentrotus purpuratus similar to MGC83562 protein (LOC576024), mRNA Length = 2205 Score = 44.1 bits (22), Expect = 2.5 Identities = 31/34 (91%) Strand = Plus / Plus Query: 125 agcggcggcaaggacagctgcttctccatgatgc 158 ||||| |||||||||||||||||| |||||||| Sbjct: 73 agcggaggcaaggacagctgcttcaacatgatgc 106
>ref|XM_776373.2| PREDICTED: Strongylocentrotus purpuratus similar to MGC83562 protein (LOC576024), mRNA Length = 2205 Score = 44.1 bits (22), Expect = 2.5 Identities = 31/34 (91%) Strand = Plus / Plus Query: 125 agcggcggcaaggacagctgcttctccatgatgc 158 ||||| |||||||||||||||||| |||||||| Sbjct: 73 agcggaggcaaggacagctgcttcaacatgatgc 106
>ref|XR_016180.1| PREDICTED: Homo sapiens similar to Tripartite motif protein 49 (RING finger protein 18) (Testis-specific ring-finger protein) (LOC642569), mRNA Length = 1357 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 653 agccatctgcttcaaatgaatg 674 |||||||||||||||||||||| Sbjct: 222 agccatctgcttcaaatgaatg 201
>ref|XR_016154.1| PREDICTED: Homo sapiens similar to Tripartite motif protein 49 (RING finger protein 18) (Testis-specific ring-finger protein) (LOC642425), mRNA Length = 1357 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 653 agccatctgcttcaaatgaatg 674 |||||||||||||||||||||| Sbjct: 222 agccatctgcttcaaatgaatg 201
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 433 cgtgtcttcgggcgccatcgcc 454 |||||||||||||||||||||| Sbjct: 2734933 cgtgtcttcgggcgccatcgcc 2734912
>ref|XM_544605.2| PREDICTED: Canis familiaris similar to CG1578-PA (LOC487480), mRNA Length = 849 Score = 44.1 bits (22), Expect = 2.5 Identities = 43/50 (86%) Strand = Plus / Plus Query: 696 gtggtgaaggtggagagtacgaaacactaactcttgactgccctctattt 745 |||| |||||||||||||| |||||| | ||| | || |||||||||||| Sbjct: 617 gtggagaaggtggagagtatgaaacattcactttggattgccctctattt 666
>gb|AC099735.47| Mus musculus chromosome 1, clone RP23-218I9, complete sequence Length = 207768 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2556 attttggtttatttattattatatgg 2581 |||||| ||||||||||||||||||| Sbjct: 134850 attttgttttatttattattatatgg 134875
>gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome 3, complete sequence Length = 195767 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2557 ttttggtttatttattattata 2578 |||||||||||||||||||||| Sbjct: 81950 ttttggtttatttattattata 81929
>ref|XM_939433.1| PREDICTED: Homo sapiens similar to Tripartite motif protein 49 (RING finger protein 18) (Testis-specific ring-finger protein) (LOC399936), mRNA Length = 858 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 653 agccatctgcttcaaatgaatg 674 |||||||||||||||||||||| Sbjct: 222 agccatctgcttcaaatgaatg 201
>ref|XM_752145.1| Ustilago maydis 521 hypothetical protein (UM01091.1) partial mRNA Length = 2340 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1775 gatgactacaacgacggtgatgacga 1800 |||||| ||||||||||||||||||| Sbjct: 1951 gatgacgacaacgacggtgatgacga 1976
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 gtggtggcgctggtgagcggcggcaa 135 ||||||||||||||| |||||||||| Sbjct: 1354468 gtggtggcgctggtgggcggcggcaa 1354493
>gb|AE011747.1| Xanthomonas axonopodis pv. citri str. 306, section 125 of 469 of the complete genome Length = 10103 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 gtggtggcgctggtgagcggcggcaa 135 ||||||||||||||| |||||||||| Sbjct: 9109 gtggtggcgctggtgggcggcggcaa 9134
>emb|CR392006.7| Zebrafish DNA sequence from clone DKEYP-57F11 in linkage group 3, complete sequence Length = 99278 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2554 tgattttggtttatttattatt 2575 |||||||||||||||||||||| Sbjct: 91017 tgattttggtttatttattatt 91038
>gb|AC092713.2| Homo sapiens chromosome 17, clone CTC-780D20, complete sequence Length = 142087 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1022 acagggaagactttgttttcca 1043 |||||||||||||||||||||| Sbjct: 62083 acagggaagactttgttttcca 62104
>emb|AL603753.3| Human DNA sequence from clone RP13-11B7 on chromosome Xp11.4-21.2 Contains the 3' end of a novel gene (FLJ36601), complete sequence Length = 138166 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 999 atacaaatgtatgcatttcaaa 1020 |||||||||||||||||||||| Sbjct: 101376 atacaaatgtatgcatttcaaa 101355
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 348 agtacagtgttactgcgggcgatgag 373 ||||||||||||||||||| |||||| Sbjct: 1579049 agtacagtgttactgcgggtgatgag 1579024
>gb|AC159966.5| Mus musculus chromosome 1, clone RP23-287P12, complete sequence Length = 208142 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2556 attttggtttatttattattatatgg 2581 |||||| ||||||||||||||||||| Sbjct: 42715 attttgttttatttattattatatgg 42740
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 433 cgtgtcttcgggcgccatcgcc 454 |||||||||||||||||||||| Sbjct: 313244 cgtgtcttcgggcgccatcgcc 313223
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 433 cgtgtcttcgggcgccatcgcc 454 |||||||||||||||||||||| Sbjct: 195246 cgtgtcttcgggcgccatcgcc 195225
>gb|AC026955.10|AC026955 Homo sapiens chromosome 17, clone RP11-585D22, complete sequence Length = 176258 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1022 acagggaagactttgttttcca 1043 |||||||||||||||||||||| Sbjct: 152748 acagggaagactttgttttcca 152769
>gb|AC011752.2| Homo sapiens BAC clone RP11-531P14 from 2, complete sequence Length = 121227 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1001 acaaatgtatgcatttcaaaga 1022 |||||||||||||||||||||| Sbjct: 54515 acaaatgtatgcatttcaaaga 54494
>dbj|AP004607.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-529A4, complete sequence Length = 160683 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 653 agccatctgcttcaaatgaatg 674 |||||||||||||||||||||| Sbjct: 86020 agccatctgcttcaaatgaatg 86041
>dbj|AP005435.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-81M19, complete sequence Length = 66005 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 653 agccatctgcttcaaatgaatg 674 |||||||||||||||||||||| Sbjct: 9918 agccatctgcttcaaatgaatg 9897
>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete sequence Length = 183369 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2559 ttggtttatttattattatatg 2580 |||||||||||||||||||||| Sbjct: 20823 ttggtttatttattattatatg 20802
>dbj|AP004833.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-358N4, complete sequence Length = 75416 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 653 agccatctgcttcaaatgaatg 674 |||||||||||||||||||||| Sbjct: 61126 agccatctgcttcaaatgaatg 61105 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 441,363,656 Number of extensions: 24747231 Number of successful extensions: 153874 Number of sequences better than 10.0: 49 Number of HSP's gapped: 153856 Number of HSP's successfully gapped: 70 Length of query: 2614 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2591 Effective length of database: 18,503,978,556 Effective search space: 47943808438596 Effective search space used: 47943808438596 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
