ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf64f24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8IZF5:GP113_HUMAN Probable G-protein coupled receptor 113 precu... 32 1.8
2Q96QU1:PCD15_HUMAN Protocadherin-15 precursor - Homo sapiens (Hu... 31 4.0
3Q5RCR5:SUMF2_PONPY Sulfatase-modifying factor 2 precursor - Pong... 30 6.8
4Q8NBJ7:SUMF2_HUMAN Sulfatase-modifying factor 2 precursor - Homo... 30 6.8
5Q8SX83:SPEN_DROME Protein split ends - Drosophila melanogaster (... 30 6.8
6P36776:LONM_HUMAN Lon protease homolog, mitochondrial precursor ... 30 6.8
7Q61JT8:VPS54_CAEBR Vacuolar protein sorting-associated protein 5... 30 8.9
8P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus ... 30 8.9
9Q05544:NO551_SOYBN Early nodulin 55-1 - Glycine max (Soybean) 30 8.9
10Q9UBS0:KS6B2_HUMAN Ribosomal protein S6 kinase beta-2 - Homo sap... 30 8.9
11Q50659:Y2306_MYCTU Uncharacterized protein Rv2306c/MT2363 precur... 30 8.9

>Q8IZF5:GP113_HUMAN Probable G-protein coupled receptor 113 precursor - Homo sapiens|
           (Human)
          Length = 1079
 Score = 32.3 bits (72), Expect = 1.8
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 17/115 (14%)
 Frame = -1

Query: 570 PIQLLAEILVVNGSPCHQPSPTCILTGKRPSSCVRLR--GRIL---------LQTPVPPC 424
           P+ LLA  L + GSP  Q S     TG RP   ++ R  G ++         +  P P C
Sbjct: 7   PLLLLATTLPLLGSPVAQASQPVSETGVRPREGLQRRQWGPLIGRDKAWNERIDRPFPAC 66

Query: 423 LVALRQKVGR------QWRSCTRKQLQSRGSGAVRGLEMAGTGRSGTNRQGVGDS 277
            + L    GR       W   +   L     G  +    +G+G+      G G+S
Sbjct: 67  PIPLSSSFGRWPKGQTMWAQTSTLTLTEEELGQSQAGGESGSGQLLDQENGAGES 121



to top

>Q96QU1:PCD15_HUMAN Protocadherin-15 precursor - Homo sapiens (Human)|
          Length = 1955

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
 Frame = +2

Query: 14   TFAWVAAISPTGSLQNDPVTLS*----TLASTPSQPCAALVSRIHGRTAGATLDVDPVAX 181
            +F+ +  +S T  L+++P  +S     +L  +PS+PC    S     T    L ++    
Sbjct: 1670 SFSTLPTVSRTVELKSEPNVISSPAECSLELSPSRPCVLHSSLSRRETPICMLPIET--- 1726

Query: 182  XXXXXXXXXXXXXXXXXXXRRQGLNHWSSSPRLSPTPCRFVPLRPVPAISSPRTAPLP 355
                                R    +++  P +SP+ C   PL P P IS P   P P
Sbjct: 1727 -------------------ERNIFENFAHPPNISPSAC---PLPPPPPISPPSPPPAP 1762



to top

>Q5RCR5:SUMF2_PONPY Sulfatase-modifying factor 2 precursor - Pongo pygmaeus (Orangutan)|
          Length = 301

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 164 HQAWHRRFGHVCGRPERRRVEREWKLGFMRGSPGRFVGYQWG*WPPPTR 18
           H +W+    +   R +R   E EW+     G  G+   Y WG W  P R
Sbjct: 146 HVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQV--YPWGNWFQPNR 192



to top

>Q8NBJ7:SUMF2_HUMAN Sulfatase-modifying factor 2 precursor - Homo sapiens (Human)|
          Length = 301

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 164 HQAWHRRFGHVCGRPERRRVEREWKLGFMRGSPGRFVGYQWG*WPPPTR 18
           H +W+    +   R +R   E EW+     G  G+   Y WG W  P R
Sbjct: 146 HVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQV--YPWGNWFQPNR 192



to top

>Q8SX83:SPEN_DROME Protein split ends - Drosophila melanogaster (Fruit fly)|
          Length = 5560

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
 Frame = -3

Query: 628 QQMTTVVKSRIGRAYKANHTDTTTSGNPRSKREPMPSAFTNMHSDWEAS*FVCPSPRTNS 449
           QQ   V  S I      N+ +       RS  EP  ++F   + D   S  V      NS
Sbjct: 32  QQQFVVDSSTIINNNNNNNNNNNNQKLKRSTEEPPTNSFERNYYDRTTSRLVTQYQANNS 91

Query: 448 T--PNSGSSMSCCFAAKGWSSMA*LYPEAASVSG*RCRARTRDGRDG 314
           T   NS SS S        S+ A ++  AA  S  R R R R  R+G
Sbjct: 92  TSLANSNSSPSSV------SASASVFATAAGGSSERSRNRDRPYRNG 132



to top

>P36776:LONM_HUMAN Lon protease homolog, mitochondrial precursor - Homo sapiens|
           (Human)
          Length = 959

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 22/65 (33%), Positives = 26/65 (40%)
 Frame = -1

Query: 465 LRGRILLQTPVPPCLVALRQKVGRQWRSCTRKQLQSRGSGAVRGLEMAGTGRSGTNRQGV 286
           LRG+       P  L      +G QWR     +  SRG GA  G E A  G +     G 
Sbjct: 40  LRGQRTCDASPPWALWGRGPAIGGQWRGFW--EASSRGGGAFSGGEDASEGGAEEGAGGA 97

Query: 285 GDSRG 271
           G S G
Sbjct: 98  GGSAG 102



to top

>Q61JT8:VPS54_CAEBR Vacuolar protein sorting-associated protein 54 - Caenorhabditis|
           briggsae
          Length = 1055

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 598 IGRAYKANHTDTTTSGNPRSKREPMPSAF 512
           + RA + +HT+ T SGN R   E +P+ F
Sbjct: 210 VKRALRLSHTEGTESGNERQDAEDLPTVF 238



to top

>P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus (strain Kaplan) (PRV)|
          Length = 1733

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -2

Query: 77   RGSPGRFVGYQWG*WPPPTRRCGH 6
            R  PG   G  WG  PPP RRCGH
Sbjct: 1596 RDRPGG--GGGWGSGPPPCRRCGH 1617



to top

>Q05544:NO551_SOYBN Early nodulin 55-1 - Glycine max (Soybean)|
          Length = 137

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 266 SSPRLSPTPCRFVPLRPVPAISSPRTAPLPRD 361
           SSP  SP+P       P P++SSP  +PLP +
Sbjct: 81  SSPSPSPSPSPSPSPSPSPSLSSPSPSPLPNN 112



to top

>Q9UBS0:KS6B2_HUMAN Ribosomal protein S6 kinase beta-2 - Homo sapiens (Human)|
          Length = 482

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 263 SSSPRLSPTPCRFVPL---RPVPAISSPRTAPLP 355
           +SSPR+  +P +F P    RP P++  P   PLP
Sbjct: 415 NSSPRVPVSPLKFSPFEGFRPSPSLPEPTELPLP 448



to top

>Q50659:Y2306_MYCTU Uncharacterized protein Rv2306c/MT2363 precursor - Mycobacterium|
           tuberculosis
          Length = 208

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 312 RSGTNRQGVGDSRGEEDQ*LRPWRRPSNEPN 220
           R    R+ VGD R +      PWRRP   PN
Sbjct: 48  RVNQRRRQVGDRRAQRGVDEHPWRRPDERPN 78


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 134,556,401
Number of extensions: 3238053
Number of successful extensions: 8842
Number of sequences better than 10.0: 11
Number of HSP's gapped: 8836
Number of HSP's successfully gapped: 11
Length of query: 235
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 125
Effective length of database: 70,513,989
Effective search space: 8814248625
Effective search space used: 8814248625
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top