| Clone Name | FLbaf67a23 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g18400:12001.t01634:unspliced-genomic endochitinase 1 precursor, putative, expressed| Length = 1545 Score = 33.6 bits (67), Expect(2) = 0.41 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 / +2 Query: 212 ERGRLVGGQVDDGAGSLGSGRGHELSIPVG 123 +RG+L+G V DGA L GH+ +P G Sbjct: 1088 DRGQLLGHSVPDGAVVLDDAEGHQAVVPPG 1177 Score = 21.7 bits (41), Expect(2) = 0.41 Identities = 6/11 (54%), Positives = 8/11 (72%) Frame = -1 / +2 Query: 127 WASSCAISCRC 95 + +SC SCRC Sbjct: 1400 YKNSCRFSCRC 1432
>LOC_Os05g01444:12005.t04698:unspliced-genomic polygalacturonase inhibitor precursor, putative, expressed| Length = 1654 Score = 32.7 bits (65), Expect = 2.2 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -3 / -2 Query: 224 VECLERGRLVGGQVDDGAGSLGSGRG 147 VE LERG LV + DGAG G+G G Sbjct: 933 VERLERGELVADEGRDGAGEGGAGDG 856
>LOC_Os01g48320:12001.t04276:unspliced-genomic 6b-interacting protein 1, putative, expressed| Length = 1799 Score = 32.2 bits (64), Expect = 3.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -3 / -2 Query: 230 HHVECLERGRLVGGQVDDGAGSLGSGRGHE 141 HH E RGRL+G G G G GR E Sbjct: 781 HHGEPAGRGRLLGATATAGGGGGGEGRADE 692
>LOC_Os12g03690:12012.t00261:unspliced-genomic D-mannose binding lectin family protein| Length = 2487 Score = 29.9 bits (59), Expect(2) = 3.7 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = -1 / -3 Query: 163 SAAAGAMS*VYRWASSCAISCRCR 92 S A S* WAS C SCRCR Sbjct: 676 SCGCSASS*SKGWASRCWRSCRCR 605 Score = 22.6 bits (43), Expect(2) = 3.7 Identities = 7/9 (77%), Positives = 7/9 (77%) Frame = -1 / -3 Query: 103 CRCRGVPRG 77 CRCRG RG Sbjct: 424 CRCRGAGRG 398
>LOC_Os02g20040:12002.t01796:unspliced-genomic expressed protein| Length = 968 Score = 31.8 bits (63), Expect = 4.1 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 / -3 Query: 574 VFFFFFCVLLIHRRRINQVASSVDGRSNLITARTHELLDS 455 +++ C L++H R+I + ++ IT TH LLDS Sbjct: 900 LYYNIRCRLVLHNRQITRHIKCAKSQTWYITVHTHTLLDS 781
>LOC_Os11g44600:12011.t03988:unspliced-genomic calmodulin binding protein, putative, expressed| Length = 10397 Score = 24.9 bits (48), Expect(2) = 4.8 Identities = 14/42 (33%), Positives = 16/42 (38%) Frame = +2 / -1 Query: 5 AEPTRPVXXXXXXXXXXXXXXGQEPSRHASATATDRTRRSPP 130 AEP R + + P ASA A R RRS P Sbjct: 4724 AEPRRTIRRAFPLRAARAWPTARSPPPSASARACRRCRRSAP 4599 Score = 23.5 bits (45), Expect(2) = 4.8 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = +1 / -1 Query: 148 PLPLPREPA 174 PLPLPR PA Sbjct: 4517 PLPLPRRPA 4491
>LOC_Os07g08520:12007.t00727:unspliced-genomic auxin response factor family protein| Length = 2647 Score = 27.2 bits (53), Expect(2) = 5.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 / -2 Query: 544 IHRRRINQVASSVDGRSNLITARTHEL 464 +HRR N+ +G ++++ AR HEL Sbjct: 906 VHRRPGNERVERREGEADVLVARHHEL 826 Score = 24.9 bits (48), Expect(2) = 5.2 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -3 / -2 Query: 251 EAEPLQSHHVECLERGRLVGGQVDDGAGSLGSG 153 E E L S E G LVGG V+ LG+G Sbjct: 510 ELEALASQVPHVEEPGGLVGGDVERRKDVLGAG 412
>LOC_Os05g10940:12005.t00927:unspliced-genomic zinc transporter 4, chloroplast precursor, putative, expressed| Length = 3328 Score = 31.3 bits (62), Expect = 5.7 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +1 / -1 Query: 76 TLSARLCNGN*SHKKKPTGILNSWPLPLP 162 T + R C G P+G NSWP P P Sbjct: 985 TTTDRTCAGTSPSPPLPSGCANSWPCPCP 899
>LOC_Os06g03070:12006.t00200:unspliced-genomic hypothetical protein| Length = 600 Score = 27.6 bits (54), Expect(2) = 6.0 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -3 / -1 Query: 194 GGQVDDGAGSLGSGRG 147 GG DDGAG GSG G Sbjct: 105 GGDDDDGAGGEGSGDG 58 Score = 22.1 bits (42), Expect(2) = 6.0 Identities = 8/15 (53%), Positives = 9/15 (60%) Frame = -1 / -3 Query: 274 RQLSAAWRRRSLCSR 230 R+ WRRRS C R Sbjct: 424 RRRRHGWRRRSSCRR 380
>LOC_Os07g46940:12007.t04330:unspliced-genomic sex determination protein tasselseed-2, putative, expressed| Length = 1318 Score = 25.4 bits (49), Expect(2) = 7.6 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -3 / +3 Query: 233 SHHVECLERGRLVGGQVDDGAGSLGSGRG 147 + H+ + G GG+ D G G+GRG Sbjct: 858 ARHLRDVPGGHRGGGEEDGDEGHAGAGRG 944 Score = 22.6 bits (43), Expect(2) = 7.6 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -1 / +2 Query: 274 RQLSAAWRRRSLCSR 230 R+ SA WRRR SR Sbjct: 707 RR*SATWRRRRTASR 751 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 162,076,425 Number of extensions: 2189553 Number of successful extensions: 9023 Number of sequences better than 10.0: 10 Length of query: 191 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 143 Effective length of database: 52,912,542 Effective search space: 7566493506 Effective search space used: 7566493506 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)