ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf67a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os01g18400:12001.t01634:unspliced-genomic endochitinase ... 34 0.41
2LOC_Os05g01444:12005.t04698:unspliced-genomic polygalacturon... 33 2.2
3LOC_Os01g48320:12001.t04276:unspliced-genomic 6b-interacting... 32 3.0
4LOC_Os12g03690:12012.t00261:unspliced-genomic D-mannose bind... 30 3.7
5LOC_Os02g20040:12002.t01796:unspliced-genomic expressed protein 32 4.1
6LOC_Os11g44600:12011.t03988:unspliced-genomic calmodulin bin... 25 4.8
7LOC_Os07g08520:12007.t00727:unspliced-genomic auxin response... 27 5.2
8LOC_Os05g10940:12005.t00927:unspliced-genomic zinc transport... 31 5.7
9LOC_Os06g03070:12006.t00200:unspliced-genomic hypothetical p... 28 6.0
10LOC_Os07g46940:12007.t04330:unspliced-genomic sex determinat... 25 7.6

>LOC_Os01g18400:12001.t01634:unspliced-genomic endochitinase 1 precursor, putative, expressed|
          Length = 1545
 Score = 33.6 bits (67), Expect(2) = 0.41
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3 / +2

                                          
Query: 212  ERGRLVGGQVDDGAGSLGSGRGHELSIPVG 123
            +RG+L+G  V DGA  L    GH+  +P G
Sbjct: 1088 DRGQLLGHSVPDGAVVLDDAEGHQAVVPPG 1177



 Score = 21.7 bits (41), Expect(2) = 0.41
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1 / +2

                       
Query: 127  WASSCAISCRC 95
            + +SC  SCRC
Sbjct: 1400 YKNSCRFSCRC 1432



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>LOC_Os05g01444:12005.t04698:unspliced-genomic polygalacturonase inhibitor precursor, putative, expressed|
          Length = 1654

 Score = 32.7 bits (65), Expect = 2.2
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -3 / -2

                                     
Query: 224 VECLERGRLVGGQVDDGAGSLGSGRG 147
           VE LERG LV  +  DGAG  G+G G
Sbjct: 933 VERLERGELVADEGRDGAGEGGAGDG 856



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>LOC_Os01g48320:12001.t04276:unspliced-genomic 6b-interacting protein 1, putative, expressed|
          Length = 1799

 Score = 32.2 bits (64), Expect = 3.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3 / -2

                                         
Query: 230 HHVECLERGRLVGGQVDDGAGSLGSGRGHE 141
           HH E   RGRL+G     G G  G GR  E
Sbjct: 781 HHGEPAGRGRLLGATATAGGGGGGEGRADE 692



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>LOC_Os12g03690:12012.t00261:unspliced-genomic D-mannose binding lectin family protein|
          Length = 2487

 Score = 29.9 bits (59), Expect(2) = 3.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1 / -3

                                   
Query: 163 SAAAGAMS*VYRWASSCAISCRCR 92
           S    A S*   WAS C  SCRCR
Sbjct: 676 SCGCSASS*SKGWASRCWRSCRCR 605



 Score = 22.6 bits (43), Expect(2) = 3.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1 / -3

                    
Query: 103 CRCRGVPRG 77
           CRCRG  RG
Sbjct: 424 CRCRGAGRG 398



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>LOC_Os02g20040:12002.t01796:unspliced-genomic expressed protein|
          Length = 968

 Score = 31.8 bits (63), Expect = 4.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1 / -3

                                                   
Query: 574 VFFFFFCVLLIHRRRINQVASSVDGRSNLITARTHELLDS 455
           +++   C L++H R+I +       ++  IT  TH LLDS
Sbjct: 900 LYYNIRCRLVLHNRQITRHIKCAKSQTWYITVHTHTLLDS 781



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>LOC_Os11g44600:12011.t03988:unspliced-genomic calmodulin binding protein, putative, expressed|
          Length = 10397

 Score = 24.9 bits (48), Expect(2) = 4.8
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +2 / -1

                                                      
Query: 5    AEPTRPVXXXXXXXXXXXXXXGQEPSRHASATATDRTRRSPP 130
            AEP R +               + P   ASA A  R RRS P
Sbjct: 4724 AEPRRTIRRAFPLRAARAWPTARSPPPSASARACRRCRRSAP 4599



 Score = 23.5 bits (45), Expect(2) = 4.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1 / -1

                     
Query: 148  PLPLPREPA 174
            PLPLPR PA
Sbjct: 4517 PLPLPRRPA 4491



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>LOC_Os07g08520:12007.t00727:unspliced-genomic auxin response factor family protein|
          Length = 2647

 Score = 27.2 bits (53), Expect(2) = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1 / -2

                                      
Query: 544 IHRRRINQVASSVDGRSNLITARTHEL 464
           +HRR  N+     +G ++++ AR HEL
Sbjct: 906 VHRRPGNERVERREGEADVLVARHHEL 826



 Score = 24.9 bits (48), Expect(2) = 5.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3 / -2

                                            
Query: 251 EAEPLQSHHVECLERGRLVGGQVDDGAGSLGSG 153
           E E L S      E G LVGG V+     LG+G
Sbjct: 510 ELEALASQVPHVEEPGGLVGGDVERRKDVLGAG 412



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>LOC_Os05g10940:12005.t00927:unspliced-genomic zinc transporter 4, chloroplast precursor, putative, expressed|
          Length = 3328

 Score = 31.3 bits (62), Expect = 5.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1 / -1

                                        
Query: 76  TLSARLCNGN*SHKKKPTGILNSWPLPLP 162
           T + R C G       P+G  NSWP P P
Sbjct: 985 TTTDRTCAGTSPSPPLPSGCANSWPCPCP 899



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>LOC_Os06g03070:12006.t00200:unspliced-genomic hypothetical protein|
          Length = 600

 Score = 27.6 bits (54), Expect(2) = 6.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3 / -1

                           
Query: 194 GGQVDDGAGSLGSGRG 147
           GG  DDGAG  GSG G
Sbjct: 105 GGDDDDGAGGEGSGDG 58



 Score = 22.1 bits (42), Expect(2) = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1 / -3

                          
Query: 274 RQLSAAWRRRSLCSR 230
           R+    WRRRS C R
Sbjct: 424 RRRRHGWRRRSSCRR 380



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>LOC_Os07g46940:12007.t04330:unspliced-genomic sex determination protein tasselseed-2, putative, expressed|
          Length = 1318

 Score = 25.4 bits (49), Expect(2) = 7.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3 / +3

                                        
Query: 233 SHHVECLERGRLVGGQVDDGAGSLGSGRG 147
           + H+  +  G   GG+ D   G  G+GRG
Sbjct: 858 ARHLRDVPGGHRGGGEEDGDEGHAGAGRG 944



 Score = 22.6 bits (43), Expect(2) = 7.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1 / +2

                          
Query: 274 RQLSAAWRRRSLCSR 230
           R+ SA WRRR   SR
Sbjct: 707 RR*SATWRRRRTASR 751


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 162,076,425
Number of extensions: 2189553
Number of successful extensions: 9023
Number of sequences better than 10.0: 10
Length of query: 191
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 143
Effective length of database: 52,912,542
Effective search space: 7566493506
Effective search space used: 7566493506
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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