Clone Name	FLbaf70d07
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	Q9FT54:GTE6_ARATH Transcription factor GTE6 - Arabidopsis thalia...	238	5e-62
2	Q9Y7N0:YCK2_SCHPO Bromodomain-containing protein C1450.02 - Schi...	76	3e-13
3	Q5TJG6:BRD2_CANFA Bromodomain-containing protein 2 - Canis famil...	75	8e-13
4	Q6MGA9:BRD2_RAT Bromodomain-containing protein 2 - Rattus norveg...	74	1e-12
5	Q7JJ13:BRD2_MOUSE Bromodomain-containing protein 2 - Mus musculu...	74	1e-12
6	P25440:BRD2_HUMAN Bromodomain-containing protein 2 - Homo sapien...	74	1e-12
7	Q32S26:BRD2_BOVIN Bromodomain-containing protein 2 - Bos taurus ...	74	1e-12
8	P13709:FSH_DROME Homeotic protein female sterile - Drosophila me...	73	3e-12
9	Q91Y44:BRDT_MOUSE Bromodomain testis-specific protein - Mus musc...	72	9e-12
10	Q9ESU6:BRD4_MOUSE Bromodomain-containing protein 4 - Mus musculu...	72	9e-12
11	O60885:BRD4_HUMAN Bromodomain-containing protein 4 - Homo sapien...	72	9e-12
12	Q9HGP4:YK82_SCHPO Bromodomain-containing protein C631.02 - Schiz...	70	2e-11
13	Q15059:BRD3_HUMAN Bromodomain-containing protein 3 - Homo sapien...	70	2e-11
14	Q07442:BDF2_YEAST Bromodomain-containing factor 2 - Saccharomyce...	70	2e-11
15	Q58F21:BRDT_HUMAN Bromodomain testis-specific protein - Homo sap...	68	9e-11
16	Q8K2F0:BRD3_MOUSE Bromodomain-containing protein 3 - Mus musculu...	68	1e-10
17	Q4R8Y1:BRDT_MACFA Bromodomain testis-specific protein - Macaca f...	67	2e-10
18	Q6E2N3:TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 - Danio re...	64	2e-09
19	Q99PP7:TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 - Mus musc...	62	7e-09
20	Q9UIG0:BAZ1B_HUMAN Bromodomain adjacent to zinc finger domain pr...	61	2e-08
21	Q9UPN9:TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 - Homo sap...	60	3e-08
22	Q56R14:TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 - Xenopus ...	59	6e-08
23	Q9NSI6:BRWD1_HUMAN Bromodomain and WD repeat domain-containing p...	58	1e-07
24	Q03330:GCN5_YEAST Histone acetyltransferase GCN5 - Saccharomyces...	57	2e-07
25	Q9DE13:BAZ2B_CHICK Bromodomain adjacent to zinc finger domain pr...	57	2e-07
26	Q756G9:GCN5_ASHGO Histone acetyltransferase GCN5 - Ashbya gossyp...	57	3e-07
27	Q9Z277:BAZ1B_MOUSE Bromodomain adjacent to zinc finger domain pr...	57	3e-07
28	Q924W6:TRI66_MOUSE Tripartite motif-containing protein 66 - Mus ...	56	5e-07
29	Q6CXW4:GCN5_KLULA Histone acetyltransferase GCN5 - Kluyveromyces...	56	5e-07
30	P45481:CBP_MOUSE CREB-binding protein - Mus musculus (Mouse)	56	5e-07
31	P35817:BDF1_YEAST Bromodomain-containing factor 1 - Saccharomyce...	55	6e-07
32	Q9UIF8:BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain pr...	55	6e-07
33	O15016:TRI66_HUMAN Tripartite motif-containing protein 66 - Homo...	55	8e-07
34	Q9UUK2:GCN5_SCHPO Histone acetyltransferase gcn5 - Schizosacchar...	55	8e-07
35	Q921C3:BRWD1_MOUSE Bromodomain and WD repeat domain-containing p...	55	8e-07
36	Q8WZM0:GCN5_YARLI Histone acetyltransferase GCN5 - Yarrowia lipo...	55	1e-06
37	Q6BER5:NU301_CAEEL Nucleosome-remodeling factor subunit NURF301-...	54	1e-06
38	Q9W0T1:NU301_DROME Nucleosome-remodeling factor subunit NURF301 ...	54	2e-06
39	Q6FTW5:GCN5_CANGA Histone acetyltransferase GCN5 - Candida glabr...	54	2e-06
40	Q6BGW1:GCN5_DEBHA Histone acetyltransferase GCN5 - Debaryomyces ...	54	2e-06
41	O15164:TIF1A_HUMAN Transcription intermediary factor 1-alpha - H...	53	3e-06
42	Q92793:CBP_HUMAN CREB-binding protein - Homo sapiens (Human)	53	4e-06
43	Q64127:TIF1A_MOUSE Transcription intermediary factor 1-alpha - M...	52	5e-06
44	Q09472:EP300_HUMAN Histone acetyltransferase p300 - Homo sapiens...	52	5e-06
45	Q8R3B7:BRD8_MOUSE Bromodomain-containing protein 8 - Mus musculu...	52	7e-06
46	Q9H0E9:BRD8_HUMAN Bromodomain-containing protein 8 - Homo sapien...	52	7e-06
47	P34545:CBP1_CAEEL Protein cbp-1 - Caenorhabditis elegans	52	9e-06
48	Q12830:BPTF_HUMAN Nucleosome remodeling factor subunit BPTF - Ho...	50	3e-05
49	Q92831:PCAF_HUMAN Histone acetyltransferase PCAF - Homo sapiens ...	49	6e-05
50	Q9UIF9:BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain pr...	49	6e-05
51	Q9NRL2:BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain pr...	49	6e-05
52	Q9ULD4:BRPF3_HUMAN Bromodomain and PHD finger-containing protein...	49	8e-05
53	Q338B9:GCN5_ORYSJ Histone acetyltransferase GCN5 - Oryza sativa ...	48	1e-04
54	Q9BXF3:CECR2_HUMAN Cat eye syndrome critical region protein 2 - ...	48	1e-04
55	Q91YE5:BAZ2A_MOUSE Bromodomain adjacent to zinc finger domain pr...	48	1e-04
56	P51123:TAF1_DROME Transcription initiation factor TFIID subunit ...	47	2e-04
57	O88379:BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain pr...	47	2e-04
58	Q9AR19:GCN5_ARATH Histone acetyltransferase GCN5 - Arabidopsis t...	47	2e-04
59	Q5R8B0:BRD7_PONPY Bromodomain-containing protein 7 - Pongo pygma...	47	2e-04
60	O88665:BRD7_MOUSE Bromodomain-containing protein 7 - Mus musculu...	47	2e-04
61	Q9NPI1:BRD7_HUMAN Bromodomain-containing protein 7 - Homo sapien...	47	2e-04
62	Q6NVM8:BRD9_XENTR Bromodomain-containing protein 9 - Xenopus tro...	47	3e-04
63	Q6GLP7:BRD9_XENLA Bromodomain-containing protein 9 - Xenopus lae...	46	4e-04
64	Q5ZKG2:BRD7_CHICK Bromodomain-containing protein 7 - Gallus gall...	46	5e-04
65	Q09948:BRD1_SCHPO Bromodomain-containing protein brd1 - Schizosa...	46	5e-04
66	Q67W65:TAF1_ORYSJ Transcription initiation factor TFIID subunit ...	45	9e-04
67	Q80UV9:TAF1_MOUSE Transcription initiation factor TFIID subunit ...	45	0.001
68	Q60544:TAF1_MESAU Transcription initiation factor TFIID subunit ...	45	0.001
69	P21675:TAF1_HUMAN Transcription initiation factor TFIID subunit ...	45	0.001
70	P51532:SMCA4_HUMAN Probable global transcription activator SNF2L...	45	0.001
71	Q6RI45:BRWD3_HUMAN Bromodomain and WD repeat domain-containing p...	45	0.001
72	Q3UQU0:BRD9_MOUSE Bromodomain-containing protein 9 - Mus musculu...	44	0.001
73	A2AHJ4:BRWD3_MOUSE Bromodomain and WD repeat domain-containing p...	44	0.002
74	O95696:BRD1_HUMAN Bromodomain-containing protein 1 - Homo sapien...	44	0.002
75	Q9ULI0:ATD2B_HUMAN ATPase family AAA domain-containing protein 2...	44	0.002
76	Q8IZX4:TAF1L_HUMAN Transcription initiation factor TFIID 210 kDa...	44	0.002
77	Q86U86:PB1_HUMAN Protein polybromo-1 - Homo sapiens (Human)	44	0.002
78	Q90941:PB1_CHICK Protein polybromo-1 - Gallus gallus (Chicken)	44	0.002
79	Q8CDM1:ATAD2_MOUSE ATPase family AAA domain-containing protein 2...	43	0.003
80	P51531:SMCA2_HUMAN Probable global transcription activator SNF2L...	43	0.004
81	Q9H8M2:BRD9_HUMAN Bromodomain-containing protein 9 - Homo sapien...	43	0.004
82	Q5RDX4:ATAD2_PONPY ATPase family AAA domain-containing protein 2...	43	0.004
83	Q6PL18:ATAD2_HUMAN ATPase family AAA domain-containing protein 2...	43	0.004
84	Q9JHD2:GCNL2_MOUSE General control of amino acid synthesis prote...	42	0.007
85	Q92830:GCNL2_HUMAN General control of amino acid synthesis prote...	42	0.007
86	Q7ZUF2:BRD9_DANRE Bromodomain-containing protein 9 - Danio rerio...	41	0.012
87	Q9UTN6:SNF21_SCHPO SNF2-family ATP-dependent chromatin remodelin...	41	0.016
88	O74964:RSC1_SCHPO Chromatin structure-remodeling complex protein...	39	0.047
89	Q8UVR5:BAZ1A_XENLA Bromodomain adjacent to zinc finger domain pr...	39	0.047
90	Q8LRK9:TAF1A_ARATH Transcription initiation factor TFIID subunit...	39	0.061
91	P22082:SNF2_YEAST Transcription regulatory protein SNF2 - Saccha...	39	0.061
92	P25439:BRM_DROME Homeotic gene regulator - Drosophila melanogast...	39	0.061
93	O94421:SNF22_SCHPO SNF2-family ATP-dependent chromatin remodelin...	39	0.080
94	Q5R5Q2:SRRM1_PONPY Serine/arginine repetitive matrix protein 1 -...	39	0.080
95	Q52KI8:SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 -...	39	0.080
96	Q8IYB3:SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 -...	39	0.080
97	P32597:STH1_YEAST Nuclear protein STH1/NPS1 - Saccharomyces cere...	38	0.10
98	Q02206:RSC4_YEAST Chromatin structure-remodeling complex protein...	38	0.10
99	P54816:TBP7_CAEEL TAT-binding homolog 7 - Caenorhabditis elegans	37	0.18
100	Q6PUA2:TAF1B_ARATH Transcription initiation factor TFIID subunit...	37	0.23
101	Q99MJ9:DDX50_MOUSE ATP-dependent RNA helicase DDX50 - Mus muscul...	37	0.30
102	Q9UZC8:RAD50_PYRAB DNA double-strand break repair rad50 ATPase -...	36	0.40
103	Q9PLH5:SYA_CHLMU Alanyl-tRNA synthetase - Chlamydia muridarum	36	0.52
104	P55201:BRPF1_HUMAN Peregrin - Homo sapiens (Human)	35	0.68
105	Q6CN69:ASF1_KLULA Histone chaperone ASF1 - Kluyveromyces lactis ...	35	0.68
106	Q6QLM7:KIF5A_RAT Kinesin heavy chain isoform 5A - Rattus norvegi...	35	0.89
107	Q8R332:NUPL1_MOUSE Nucleoporin p58/p45 - Mus musculus (Mouse)	34	1.5
108	Q6C2Q7:NOP12_YARLI Nucleolar protein 12 - Yarrowia lipolytica (C...	34	2.0
109	P12845:MYO2_CAEEL Myosin-2 - Caenorhabditis elegans	33	2.6
110	O58687:RAD50_PYRHO DNA double-strand break repair rad50 ATPase -...	33	3.4
111	P70581:NUPL1_RAT Nucleoporin p58/p45 - Rattus norvegicus (Rat)	33	3.4
112	P04415:DPOL_BPT4 DNA polymerase - Bacteriophage T4	33	3.4
113	O33395:UVRB_NEIMB UvrABC system protein B - Neisseria meningitid...	33	4.4
114	P13533:MYH6_HUMAN Myosin-6 - Homo sapiens (Human)	33	4.4
115	Q6CDN5:DBP6_YARLI ATP-dependent RNA helicase DBP6 - Yarrowia lip...	33	4.4
116	Q5F931:UVRB_NEIG1 UvrABC system protein B - Neisseria gonorrhoea...	32	5.7
117	Q6CJ38:SWR1_KLULA Helicase SWR1 - Kluyveromyces lactis (Yeast) (...	32	5.7
118	Q06488:RSC2_YEAST Chromatin structure-remodeling complex protein...	32	5.7
119	Q93Y39:RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 - Arabi...	32	5.7
120	P12689:REV1_YEAST DNA repair protein REV1 - Saccharomyces cerevi...	32	5.7
121	Q91Z83:MYH7_MOUSE Myosin-7 - Mus musculus (Mouse)	32	5.7
122	P13540:MYH7_MESAU Myosin-7 - Mesocricetus auratus (Golden hamster)	32	5.7
123	P12883:MYH7_HUMAN Myosin-7 - Homo sapiens (Human)	32	5.7
124	Q20318:LIN49_CAEEL Protein lin-49 - Caenorhabditis elegans	32	5.7
125	P53236:RSC1_YEAST Chromatin structure-remodeling complex protein...	32	7.5
126	Q9BVL2:NUPL1_HUMAN Nucleoporin p58/p45 - Homo sapiens (Human)	32	7.5
127	P02564:MYH7_RAT Myosin-7 - Rattus norvegicus (Rat)	32	7.5
128	Q8MJU9:MYH7_HORSE Myosin-7 - Equus caballus (Horse)	32	7.5
129	P10587:MYH11_CHICK Myosin-11 - Gallus gallus (Chicken)	32	7.5
130	Q96LB3:IFT74_HUMAN Intraflagellar transport 74 homolog - Homo sa...	32	7.5
131	O74225:HSP88_NEUCR Heat shock protein Hsp88 - Neurospora crassa	32	7.5
132	P48608:DIA_DROME Protein diaphanous - Drosophila melanogaster (F...	32	7.5
133	Q6CFR0:ATG11_YARLI Autophagy-related protein 11 - Yarrowia lipol...	32	7.5
134	P56996:UVRB_NEIMA UvrABC system protein B - Neisseria meningitid...	32	9.8
135	Q50939:UVRB_NEIGO UvrABC system protein B - Neisseria gonorrhoeae	32	9.8
136	O74331:RLP1_SCHPO DNA-repair protein rlp1 - Schizosaccharomyces ...	32	9.8
137	P26849:NU5M_MARPO NADH-ubiquinone oxidoreductase chain 5 - March...	32	9.8
138	P79777:BRAC_CHICK Brachyury protein - Gallus gallus (Chicken)	32	9.8
139	Q13243:SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 - Hom...	32	9.8

---

>Q9FT54:GTE6_ARATH Transcription factor GTE6 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 369
 Score =  238 bits (607), Expect = 5e-62
 Identities = 135/349 (38%), Positives = 194/349 (55%), Gaps = 20/349 (5%)
 Frame = +3

Query: 399  EVDSFRRQVDDLASKTDVLERRVNEVVGFYDG---------KKHGSAGRRAIGSSRYAAN 551
            + +  +++VD++    D LE ++ EV  FY            K    GR  +G  +    
Sbjct: 20   DAECIKQRVDEVLQWVDSLEHKLKEVEEFYSSIGVSNSGSIGKDTEKGRHVVGIRKIQQE 79

Query: 552  GARDSN--CKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFS 725
             AR      K M DLMRQ   I RQIT H+ + PF+ PV+V GL L DY+++I KPMDFS
Sbjct: 80   AARREAVAAKRMQDLMRQFGTIFRQITQHKCAWPFMHPVNVEGLGLHDYFEVIDKPMDFS 139

Query: 726  TIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXX 905
            TI+N+ME KDGT YK V +IY+D+RL+F NAM YN+E  DV+ MA               
Sbjct: 140  TIKNQMEAKDGTGYKHVMQIYADMRLVFENAMNYNEETSDVYSMAKKLLEKFEEKWAHFL 199

Query: 906  PKVENEER-KQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKK 1082
            PKV+ EE+ +++ E   A     + E +  +  ++  +E+   N +LE+L   VV+RC+K
Sbjct: 200  PKVQEEEKIREEEEKQAAKEALLAKEASHIKTTRELGNEICHANDELEKLMRKVVERCRK 259

Query: 1083 MTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFF 1262
            +T +EKR +G  L  L+P+D  K L +VAQ NP FQ  AEE+ ++MD   E TLWRLKFF
Sbjct: 260  ITIEEKRNIGLALLKLSPDDLQKVLGIVAQANPSFQPRAEEVSIEMDILDEPTLWRLKFF 319

Query: 1263 VREAL--------ERQANPAAAPGKTDENAKRKRDIYNALAKTASKRIR 1385
            V++AL        E +       G   +   +KR+    LA+  +KR R
Sbjct: 320  VKDALDNAMKKKKEEETKTRELSGAQKKEVSKKRNATTKLAERKTKRSR 368

---

>Q9Y7N0:YCK2_SCHPO Bromodomain-containing protein C1450.02 - Schizosaccharomyces pombe|
            (Fission yeast)
          Length = 578

 Score = 76.3 bits (186), Expect = 3e-13
 Identities = 67/289 (23%), Positives = 128/289 (44%), Gaps = 23/289 (7%)
 Frame = +3

Query: 591  MRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGT 761
            MR  + +++++   ++ +   PF QPVD V     DY+ +I +PMD STIQ+K+   +  
Sbjct: 257  MRFCSTVLKELYKRQYESFAFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKL---NKN 313

Query: 762  KYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEER-KQQ 938
            +Y ++ E  SD+ L+F N  TYN     VH+M                PK ++    KQQ
Sbjct: 314  EYSTLEEFESDILLMFNNCFTYNPPGTPVHVMG-RQLENVFKEKWEARPKFDDATLVKQQ 372

Query: 939  METNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRN-MVVQRCKKMTTDEK----- 1100
                DA   +   E+A+    +    +   ++KQ+  L++ +   + KKM    K     
Sbjct: 373  EAETDALFDNGEEEEALMSEEEINGAKFAAVDKQISMLQDTLEAMKAKKMNRMRKPRRRD 432

Query: 1101 -------------RKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSETT 1241
                          +L     +L+ E  S   E++ ++ P  + T +E+++D+       
Sbjct: 433  LTKEYGPITYAMQNELAERCNYLSAEQLSNVAEILREEMPWLRDT-DEIEIDVGNMKPEV 491

Query: 1242 LWRLKFFVREALERQANPAAAPGKTDENAKRKRDIYNALAKTASKRIRR 1388
              R+  +V +     + PA+      +  K+K  + +   +  +++IRR
Sbjct: 492  FHRIYRYVCKPDADSSEPASPVLMPTKPEKKKGRVLSETEQ--AEKIRR 538



 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 28/83 (33%), Positives = 42/83 (50%)
 Frame = +3

Query: 582 PDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGT 761
           P   +    I+RQ+   + SAPF  PVD +   + DY  I+  PMD  TI+ K+   +  
Sbjct: 87  PPQQKYCLAIVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYE-- 144

Query: 762 KYKSVREIYSDVRLIFTNAMTYN 830
            Y   +E   D+ L+F+N   YN
Sbjct: 145 -YSVPQEFIDDMNLMFSNCFLYN 166

---

>Q5TJG6:BRD2_CANFA Bromodomain-containing protein 2 - Canis familiaris (Dog)|
          Length = 803

 Score = 75.1 bits (183), Expect = 8e-13
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 9/171 (5%)
 Frame = +3

Query: 564  SNCKG-MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTI 731
            S+ KG + + ++   GI++++ S + +A   PF +PVD   L L DY+ II  PMD ST+
Sbjct: 340  SSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTV 399

Query: 732  QNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPK 911
            + KME +D   Y+  +E  +DVRL+F+N   YN   HDV  MA               P 
Sbjct: 400  KRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMA-RKLQDVFEFRYAKMPD 455

Query: 912  VENEERKQQMETNDAP-----TTDTSPEDAIAQLAKDTDDELNEINKQLEE 1049
               E     + T   P     ++++S E++ ++ + + D+E +E  ++ EE
Sbjct: 456  EPLEPGPLPVSTALPPGLAKSSSESSSEESSSESSSEEDEEEDEEEEEEEE 506



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DY+KII +PMD  TI+ ++E      Y +  E  
Sbjct: 86  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 142

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 143 QDFNTMFTNCYIYNKPTDDIVLMA 166

---

>Q6MGA9:BRD2_RAT Bromodomain-containing protein 2 - Rattus norvegicus (Rat)|
          Length = 798

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
 Frame = +3

Query: 564 SNCKG-MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTI 731
           S+ KG + + ++   GI++++ S + +A   PF +PVD   L L DY+ II  PMD ST+
Sbjct: 339 SSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTV 398

Query: 732 QNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA 860
           + KME +D   Y+  +E  +DVRL+F+N   YN   HDV  MA
Sbjct: 399 KRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMA 438



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DY+KII +PMD  TI+ ++E      Y +  E  
Sbjct: 85  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 141

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 142 QDFNTMFTNCYIYNKPTDDIVLMA 165

---

>Q7JJ13:BRD2_MOUSE Bromodomain-containing protein 2 - Mus musculus (Mouse)|
          Length = 798

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
 Frame = +3

Query: 564 SNCKG-MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTI 731
           S+ KG + + ++   GI++++ S + +A   PF +PVD   L L DY+ II  PMD ST+
Sbjct: 339 SSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTV 398

Query: 732 QNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA 860
           + KME +D   Y+  +E  +DVRL+F+N   YN   HDV  MA
Sbjct: 399 KRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMA 438



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DY+KII +PMD  TI+ ++E      Y +  E  
Sbjct: 85  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 141

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 142 QDFNTMFTNCYIYNKPTDDIVLMA 165

---

>P25440:BRD2_HUMAN Bromodomain-containing protein 2 - Homo sapiens (Human)|
          Length = 801

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
 Frame = +3

Query: 564 SNCKG-MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTI 731
           S+ KG + + ++   GI++++ S + +A   PF +PVD   L L DY+ II  PMD ST+
Sbjct: 340 SSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTV 399

Query: 732 QNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA 860
           + KME +D   Y+  +E  +DVRL+F+N   YN   HDV  MA
Sbjct: 400 KRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMA 439



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DY+KII +PMD  TI+ ++E      Y +  E  
Sbjct: 86  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 142

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 143 QDFNTMFTNCYIYNKPTDDIVLMA 166

---

>Q32S26:BRD2_BOVIN Bromodomain-containing protein 2 - Bos taurus (Bovine)|
          Length = 803

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
 Frame = +3

Query: 564 SNCKG-MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTI 731
           S+ KG + + ++   GI++++ S + +A   PF +PVD   L L DY+ II  PMD ST+
Sbjct: 340 SSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTV 399

Query: 732 QNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA 860
           + KME +D   Y+  +E  +DVRL+F+N   YN   HDV  MA
Sbjct: 400 KRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMA 439



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DY+KII +PMD  TI+ ++E      Y +  E  
Sbjct: 86  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 142

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 143 QDFNTMFTNCYIYNKPTDDIVLMA 166

---

>P13709:FSH_DROME Homeotic protein female sterile - Drosophila melanogaster (Fruit|
           fly)
          Length = 2038

 Score = 73.2 bits (178), Expect = 3e-12
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
 Frame = +3

Query: 378 TEHPAVSEVDSFRRQVDDLASKTDVLERRVNEVVGF----YDGKKHGSAGRRAIGS--SR 539
           T  P  +  +S   Q+D  ++K         + + F    Y+    G +G   +G   + 
Sbjct: 404 TTTPTANAFESPYTQMDSKSAKIATRRESNRQDLTFQGSGYNMSPLGVSGVPGLGGLVAG 463

Query: 540 YAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITK 710
             A  A   N + + D ++    I++++ S + S    PF +PVD   L L DY+ II K
Sbjct: 464 GVAGVAVAKNKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAEMLGLHDYHDIIKK 523

Query: 711 PMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIM 857
           PMD  T++ KM   D  +YKS  E  +DVRLIFTN   YN   HDV  M
Sbjct: 524 PMDLGTVKRKM---DNREYKSAPEFAADVRLIFTNCYKYNPPDHDVVAM 569



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 34/84 (40%), Positives = 46/84 (54%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ I  H +S PF QPVD   L L DY+KII +PMD  TI+ ++E      Y S +E  
Sbjct: 46  VMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLE---NNYYWSAKETI 102

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +F N   YN    DV +MA
Sbjct: 103 QDFNTMFNNCYVYNKPGEDVVVMA 126

---

>Q91Y44:BRDT_MOUSE Bromodomain testis-specific protein - Mus musculus (Mouse)|
          Length = 956

 Score = 71.6 bits (174), Expect = 9e-12
 Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
 Frame = +3

Query: 645  PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMT 824
            PF  PVD   L L +YY ++  PMD  TI+ KM   D  +YK   E  +DVRL+F N   
Sbjct: 293  PFYNPVDADALGLHNYYDVVKNPMDLGTIKGKM---DNQEYKDAYEFAADVRLMFMNCYK 349

Query: 825  YNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQMETN-----------DAPTTDT 971
            YN   H+V  MA                +         + TN           +A + D 
Sbjct: 350  YNPPDHEVVAMARTLQDVFELHFAKIPDEPIESMHACHLTTNSAQALSRESSSEASSGDA 409

Query: 972  SPEDA----IAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKR 1103
            S ED+    +  LAK   ++LN +++QL+ L  + +++ KK     KR
Sbjct: 410  SSEDSEDERVQHLAK-LQEQLNAVHQQLQVLSQVPLRKLKKKNEKSKR 456



 Score = 65.9 bits (159), Expect = 5e-10
 Identities = 33/84 (39%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H +S PF QPVD V L+L DYY II  PMD +TI+ ++E K    Y+   E  
Sbjct: 38  VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENK---YYEKASECI 94

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +F+N   YN    D+ +MA
Sbjct: 95  EDFNTMFSNCYLYNKTGDDIVVMA 118

---

>Q9ESU6:BRD4_MOUSE Bromodomain-containing protein 4 - Mus musculus (Mouse)|
          Length = 1400

 Score = 71.6 bits (174), Expect = 9e-12
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
 Frame = +3

Query: 603  AGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKS 773
            +GI++++ + + +A   PF +PVDV  L L DY  II  PMD STI++K+E ++   Y+ 
Sbjct: 359  SGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE---YRD 415

Query: 774  VREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVE------------ 917
             +E  +DVRL+F+N   YN   H+V  MA                + E            
Sbjct: 416  AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVTVSSPAVP 475

Query: 918  ----------NEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV 1067
                      + +      ++   +TD S E+   +LA +  ++L  +++QL  L     
Sbjct: 476  PPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLA-ELQEQLKAVHEQLAALSQPQQ 534

Query: 1068 QRCKKMTTDEKRK 1106
             + KK   D+K K
Sbjct: 535  NKPKKKEKDKKEK 547



 Score = 66.6 bits (161), Expect = 3e-10
 Identities = 33/84 (39%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DYYKII  PMD  TI+ ++E      Y + +E  
Sbjct: 70  VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLE---NNYYWNAQECI 126

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 127 QDFNTMFTNCYIYNKPGDDIVLMA 150



 Score = 40.8 bits (94), Expect = 0.016
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV------- 1067
            K E  ++K+++E N    T   P     +  K+     N   K+    +           
Sbjct: 548  KKEKHKKKEEVEENKKSKTKELPPK---KTKKNNSSNSNVSKKEPVPTKTKPPPTYESEE 604

Query: 1068 -QRCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQ-TTAEELDLDMDAQSETT 1241
              +CK M+ +EKR+L   +  L  E   + + ++    P  + +  +E+++D +    +T
Sbjct: 605  EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPST 664

Query: 1242 LWRLKFFVREALERQANPAA 1301
            L  L+ +V   L ++  P A
Sbjct: 665  LRELERYVTSCLRKKRKPQA 684

---

>O60885:BRD4_HUMAN Bromodomain-containing protein 4 - Homo sapiens (Human)|
          Length = 1362

 Score = 71.6 bits (174), Expect = 9e-12
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
 Frame = +3

Query: 603  AGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKS 773
            +GI++++ + + +A   PF +PVDV  L L DY  II  PMD STI++K+E ++   Y+ 
Sbjct: 358  SGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRD 414

Query: 774  VREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVE------------ 917
             +E  +DVRL+F+N   YN   H+V  MA                + E            
Sbjct: 415  AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVAVSSPAVP 474

Query: 918  ----------NEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV 1067
                      + +      ++   +TD S E+   +LA +  ++L  +++QL  L     
Sbjct: 475  PPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLA-ELQEQLKAVHEQLAALSQPQQ 533

Query: 1068 QRCKKMTTDEKRK 1106
             + KK   D+K K
Sbjct: 534  NKPKKKEKDKKEK 546



 Score = 66.6 bits (161), Expect = 3e-10
 Identities = 33/84 (39%), Positives = 48/84 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD V L L DYYKII  PMD  TI+ ++E      Y + +E  
Sbjct: 70  VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLE---NNYYWNAQECI 126

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 127 QDFNTMFTNCYIYNKPGDDIVLMA 150



 Score = 42.4 bits (98), Expect = 0.006
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV------- 1067
            K E  +RK+++E N        P     +  K+     N   K+   +++          
Sbjct: 547  KKEKHKRKEEVEENKKSKAKEPPPK---KTKKNNSSNSNVSKKEPAPMKSKPPPTYESEE 603

Query: 1068 -QRCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQ-TTAEELDLDMDAQSETT 1241
              +CK M+ +EKR+L   +  L  E   + + ++    P  + +  +E+++D +    +T
Sbjct: 604  EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPST 663

Query: 1242 LWRLKFFVREALERQANPAA 1301
            L  L+ +V   L ++  P A
Sbjct: 664  LRELERYVTSCLRKKRKPQA 683

---

>Q9HGP4:YK82_SCHPO Bromodomain-containing protein C631.02 - Schizosaccharomyces pombe|
            (Fission yeast)
          Length = 727

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 75/360 (20%), Positives = 146/360 (40%), Gaps = 33/360 (9%)
 Frame = +3

Query: 408  SFRRQVDDLASKTDVLERRVNEVVGFYDGKKHGSAGRRAIGSSRYAANGARDSNCKGMPD 587
            +F RQ+  L S       R           K G+  RR       +++G R++     P 
Sbjct: 327  TFERQLKQLPSAYVTSYSRPGRRPRSMTAPKGGARTRRQAAMYSNSSSGIRETMYDLKPH 386

Query: 588  LMRQLA------GIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNK 740
              +  A       +++++   +  A   PF +PV+       DY+K+I  PMD  T+QNK
Sbjct: 387  RRKDAAEMKFCQSVLKELLKKQHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQNK 446

Query: 741  MEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVEN 920
            +   +  +Y S++   +D+ L+F N   +N     VH+M                P  ++
Sbjct: 447  L---NHNEYASMKAFEADMVLMFKNCYKFNSAGTPVHLMG-KKLESIFQKLWANKPDFDS 502

Query: 921  EERKQQMETN-DAPTTDTSPEDAIAQLAKDTDDELNEINKQLEEL--------------- 1052
            E        N D    D    D+  +  +D  +E   +N+Q+ +L               
Sbjct: 503  ETYMGMSSVNTDYYYGDNEVFDSGDEFLEDDGEEFEAVNRQIHKLQSTLQAMKSRARSSS 562

Query: 1053 -------RNMVVQRCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELD 1211
                   R++ V     +T + + +L     +L+ +  S   E++    P  + T +E++
Sbjct: 563  VSRRSRSRSLSVDIYPPITYEMQNELAEQCNYLSADQLSHVAEILRAALPHLRNT-DEIE 621

Query: 1212 LDMDAQSETTLWRLKFFVREALERQANPAAAPGKTDENAKRKRDIYNALAKT-ASKRIRR 1388
            +D+ A      +++ ++V +  E  A   A    T +  K+ R    AL++T  +++IR+
Sbjct: 622  IDVSAMPPDVFYKVYYYVCKGDEIGAEALATASHTHQEKKKGR----ALSETEQAEKIRQ 677



 Score = 49.3 bits (116), Expect = 5e-05
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = +3

Query: 594 RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKS 773
           + +  ++RQ+     S PF  PVD V   + DY  II  P+D  T+Q K        Y S
Sbjct: 236 KYIHAMLRQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKF---SSGVYSS 292

Query: 774 VREIYSDVRLIFTNAMTYNDELHDVHIM 857
            +    D+ L+F+N   YN     V +M
Sbjct: 293 AQHFIDDMNLMFSNCFLYNGTESPVGVM 320

---

>Q15059:BRD3_HUMAN Bromodomain-containing protein 3 - Homo sapiens (Human)|
          Length = 726

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 20/192 (10%)
 Frame = +3

Query: 591  MRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGT 761
            +R    I+R++ S + +A   PF +PVD   L+L DY+ II  PMD ST++ KM   DG 
Sbjct: 312  LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKM---DGR 368

Query: 762  KYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA-----------------XXXXXXXXXX 890
            +Y   +   +DVRL+F+N   YN   H+V  MA                           
Sbjct: 369  EYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPVEAPALPAP 428

Query: 891  XXXXXPKVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQ 1070
                  K     R  +  ++D+ ++D S E+   +LA +  ++L  +++QL  L    V 
Sbjct: 429  AAPMVSKGAESSRSSEESSSDSGSSD-SEEERATRLA-ELQEQLKAVHEQLAALSQAPVN 486

Query: 1071 RCKKMTTDEKRK 1106
            + KK    ++++
Sbjct: 487  KPKKKKEKKEKE 498



 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 47/84 (55%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD + L L DY+KII  PMD  TI+ ++E      Y S  E  
Sbjct: 46  VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLE---NNYYWSASECM 102

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 103 QDFNTMFTNCYIYNKPTDDIVLMA 126

---

>Q07442:BDF2_YEAST Bromodomain-containing factor 2 - Saccharomyces cerevisiae (Baker's|
            yeast)
          Length = 638

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 65/286 (22%), Positives = 120/286 (41%), Gaps = 41/286 (14%)
 Frame = +3

Query: 645  PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMT 824
            PFLQPVD + L L +Y+ ++  PMD  TI N +      KYK++ +   D+ L+F N   
Sbjct: 344  PFLQPVDPIALNLPNYFDVVKNPMDLGTISNNLM---NWKYKTIDQFVDDLNLVFYNCFQ 400

Query: 825  YNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQMETNDAPTTDTSPEDAIAQLAK 1004
            +N E ++VH M                  +EN++   ++ET D+   + +   + +   +
Sbjct: 401  FNPEGNEVHSMGKKLKELFNFHW------LENQDILNEIET-DSDLEEDNYSSSYSSDDE 453

Query: 1005 DTDDELNE--------------INKQLEELRNMVVQRCKKMTTDEKRK-LGAGLCHL--- 1130
              D+++NE              + K   EL+ +  Q   K++ + KRK LG  L      
Sbjct: 454  YDDEDINENDITNPAIQYLEQKLKKMEVELQQLKRQELSKLSKERKRKHLGKTLLRRKAM 513

Query: 1131 --TPEDFSKALELVAQDNPDFQ-------------------TTAEELDLDMDAQSETTLW 1247
              + +D  K++     +  D +                   +  +E+++D+D   E T+ 
Sbjct: 514  KHSVDDLKKSITDKINELSDLEMNGMIRIIKNSLPADEILTSNEDEIEIDLDILDEATIA 573

Query: 1248 RL--KFFVREALERQANPAAAPGKTDENAKRKRDIYNALAKTASKR 1379
            R+  ++F +              K + N+KRK     + A T  K+
Sbjct: 574  RIYERYFEK--------------KNNNNSKRKLSGNYSTAPTNKKK 605



 Score = 55.5 bits (132), Expect = 6e-07
 Identities = 35/149 (23%), Positives = 60/149 (40%)
 Frame = +3

Query: 582  PDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGT 761
            P   + L   I+     + + PFL+PVD + L +  Y+  +  PMD S I+ K++   G 
Sbjct: 136  PHQSKYLLSSIKATKRLKDARPFLKPVDPIALNIPHYFNYVQTPMDLSLIETKLQ---GN 192

Query: 762  KYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQM 941
             Y SV ++ SD + +  N + +N     +  MA               P+V      ++ 
Sbjct: 193  VYHSVEQVTSDFKTMVDNCLNFNGPESSISSMAKRIQKYFEKKLSAMPPRVLPASALKKT 252

Query: 942  ETNDAPTTDTSPEDAIAQLAKDTDDELNE 1028
              N     D      I +    T+D + E
Sbjct: 253  SRNRKKNEDMDSPLVIRRSVSTTNDNIGE 281

---

>Q58F21:BRDT_HUMAN Bromodomain testis-specific protein - Homo sapiens (Human)|
          Length = 947

 Score = 68.2 bits (165), Expect = 9e-11
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
 Frame = +3

Query: 627  SHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLI 806
            S+ W  PF  PVDV  L L +YY ++  PMD  TI+ KM   D  +YK   +  +DVRL+
Sbjct: 290  SYAW--PFYNPVDVNALGLHNYYDVVKNPMDLGTIKEKM---DNQEYKDAYKFAADVRLM 344

Query: 807  FTNAMTYNDELHDVHIMA-----------XXXXXXXXXXXXXXXPKVENEERKQQMETND 953
            F N   YN   H+V  MA                           K +  E   +  TN+
Sbjct: 345  FMNCYKYNPPDHEVVTMARMLQDVFETHFSKIPIEPVESMPLCYIKTDITETTGRENTNE 404

Query: 954  AP----TTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKRK 1106
            A     ++D S ++ + +LAK   ++L  +++QL+ L  +  ++  K     K++
Sbjct: 405  ASSEGNSSDDSEDERVKRLAK-LQEQLKAVHQQLQVLSQVPFRKLNKKKEKSKKE 458



 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 47/84 (55%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H +S PF +PVD V L+L DYY II  PMD +TI+ ++E K    Y    E  
Sbjct: 39  VLKDLWKHSFSWPFQRPVDAVKLKLPDYYTIIKNPMDLNTIKKRLENK---YYAKASECI 95

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +F+N   YN    D+ +MA
Sbjct: 96  EDFNTMFSNCYLYNKPGDDIVLMA 119

---

>Q8K2F0:BRD3_MOUSE Bromodomain-containing protein 3 - Mus musculus (Mouse)|
          Length = 726

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
 Frame = +3

Query: 591  MRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGT 761
            +R    I+R++ S + +A   PF +PVD   L+L DY+ II  PMD ST++ KM   D  
Sbjct: 311  LRHCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKM---DSR 367

Query: 762  KYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA-----------------XXXXXXXXXX 890
            +Y   +   +D+RL+F+N   YN   H+V  MA                           
Sbjct: 368  EYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPMEAPALPAP 427

Query: 891  XXXXXPKVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQ 1070
                  K     R  +  ++D+ ++D S E+   +LA +  ++L  +++QL  L    V 
Sbjct: 428  TAPIVSKGAESSRSSEESSSDSGSSD-SEEERATRLA-ELQEQLKAVHEQLAALSQAPVN 485

Query: 1071 RCKKMTTDEKRK 1106
            + KK    ++++
Sbjct: 486  KPKKKKEKKEKE 497



 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 47/84 (55%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H+++ PF QPVD + L L DY+KII  PMD  TI+ ++E      Y S  E  
Sbjct: 45  VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLE---NNYYWSASECM 101

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +FTN   YN    D+ +MA
Sbjct: 102 QDFNTMFTNCYIYNKPTDDIVLMA 125

---

>Q4R8Y1:BRDT_MACFA Bromodomain testis-specific protein - Macaca fascicularis (Crab|
            eating macaque) (Cynomolgus monkey)
          Length = 947

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 15/255 (5%)
 Frame = +3

Query: 627  SHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLI 806
            S+ W  PF  PVDV  L L +YY I+  PMD  TI+ KM   D  +YK   +  +DVRL+
Sbjct: 290  SYAW--PFYNPVDVNALGLHNYYDIVKNPMDLGTIKEKM---DNQEYKDAYKFAADVRLM 344

Query: 807  FTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXP-----------KVENEERKQQMETND 953
            F N   YN   H+V  MA                           K +  E   +  TN+
Sbjct: 345  FMNCYKYNPPDHEVVTMARRLQDVFETHFSKIPVEPVESMPLCYIKTDITETTGRENTNE 404

Query: 954  AP----TTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKRKLGAGL 1121
            A     ++  S ++ + +LAK   ++L  +++QL+ L  +  ++  K     K++     
Sbjct: 405  ASSEGNSSGASEDERVQRLAK-LQEQLKAVHQQLQVLSQVPFRKLNKKKEKSKKE----- 458

Query: 1122 CHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREALERQANPAA 1301
                     K  E V   N + +   E++ L   ++      R + ++ +  E + N  A
Sbjct: 459  ---------KKKEKVNNSNENPRKMCEQMRLKEKSKRNQPKKRKQQYIGQKSEDEDN--A 507

Query: 1302 APGKTDENAKRKRDI 1346
             P   DE  +   +I
Sbjct: 508  KPMNYDEKRQLSLNI 522



 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 47/84 (55%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +++ +  H +S PF +PVD V L+L DYY II  PMD +TI+ ++E K    Y    E  
Sbjct: 39  VLKDLWKHSFSWPFQRPVDAVKLKLPDYYTIIKNPMDLNTIKKRLENK---YYVKASECI 95

Query: 789 SDVRLIFTNAMTYNDELHDVHIMA 860
            D   +F+N   YN    D+ +MA
Sbjct: 96  EDFNTMFSNCYLYNKPGDDIVLMA 119

---

>Q6E2N3:TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 - Danio rerio (Zebrafish)|
            (Brachydanio rerio)
          Length = 1163

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 31/84 (36%), Positives = 48/84 (57%)
 Frame = +3

Query: 582  PDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGT 761
            P+  R+   ++  +  HE S  F +PV      + +YYKII  PMD + ++ K++ K   
Sbjct: 994  PEEQRRCERLLLHVFCHELSTEFQEPVPT---SVPNYYKIIKHPMDLTLVKRKLQRKHPL 1050

Query: 762  KYKSVREIYSDVRLIFTNAMTYND 833
             YKS +E  SDVRL+F+N   YN+
Sbjct: 1051 HYKSPKEFVSDVRLVFSNCAKYNE 1074

---

>Q99PP7:TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 - Mus musculus (Mouse)|
          Length = 1142

 Score = 62.0 bits (149), Expect = 7e-09
 Identities = 39/124 (31%), Positives = 59/124 (47%)
 Frame = +3

Query: 489  DGKKHGSAGRRAIGSSRYAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDV 668
            D  +H   G+ A G S               P   R+   ++  +  HE S  F +PV V
Sbjct: 959  DNMQHSKKGKTAQGLS---------------PVDQRKCERLLLYLYCHELSIEFQEPVPV 1003

Query: 669  VGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDV 848
                + +YYKII KPMD ST++ K++ K    Y+   +  +DVRLIF N   +N+ +  V
Sbjct: 1004 ---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVV 1060

Query: 849  HIMA 860
             + A
Sbjct: 1061 QVYA 1064

---

>Q9UIG0:BAZ1B_HUMAN Bromodomain adjacent to zinc finger domain protein 1B - Homo sapiens|
            (Human)
          Length = 1483

 Score = 60.8 bits (146), Expect = 2e-08
 Identities = 31/74 (41%), Positives = 46/74 (62%)
 Frame = +3

Query: 609  IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
            I+ +I  + +S PF +PV     + +DYY +IT PMDF T+QNK        Y+SV+E  
Sbjct: 1351 ILHKIVKYRFSWPFREPV--TRDEAEDYYDVITHPMDFQTVQNKC---SCGSYRSVQEFL 1405

Query: 789  SDVRLIFTNAMTYN 830
            +D++ +FTNA  YN
Sbjct: 1406 TDMKQVFTNAEVYN 1419

---

>Q9UPN9:TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 - Homo sapiens (Human)|
          Length = 1127

 Score = 60.1 bits (144), Expect = 3e-08
 Identities = 38/124 (30%), Positives = 58/124 (46%)
 Frame = +3

Query: 489  DGKKHGSAGRRAIGSSRYAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDV 668
            D  +H   G+ A G S               P   R+   ++  +  HE S  F +PV  
Sbjct: 944  DNLQHSKKGKTAQGLS---------------PVDQRKCERLLLYLYCHELSIEFQEPVPA 988

Query: 669  VGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDV 848
                + +YYKII KPMD ST++ K++ K    Y+   +  +DVRLIF N   +N+ +  V
Sbjct: 989  ---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVV 1045

Query: 849  HIMA 860
             + A
Sbjct: 1046 QVYA 1049

---

>Q56R14:TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 - Xenopus laevis (African clawed|
            frog)
          Length = 1091

 Score = 58.9 bits (141), Expect = 6e-08
 Identities = 30/77 (38%), Positives = 44/77 (57%)
 Frame = +3

Query: 630  HEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIF 809
            HE S  F +PV      + +YYKII KPMD ST++ K++ K    Y++  +  +DVRLIF
Sbjct: 939  HELSIEFQEPVPAT---IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQTPEDFVADVRLIF 995

Query: 810  TNAMTYNDELHDVHIMA 860
             N   +N+ +  V   A
Sbjct: 996  KNCERFNEMMKVVQAYA 1012

---

>Q9NSI6:BRWD1_HUMAN Bromodomain and WD repeat domain-containing protein 1 - Homo sapiens|
            (Human)
          Length = 2320

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
 Frame = +3

Query: 507  SAGRRAI--GSSRYAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQ 680
            S+GRR +  G     A    +SN K      +Q   ++  I   E S PF QPVD+V  +
Sbjct: 1295 SSGRRRVHDGKKSIRATNYVESNWK------KQCKELVNLIFQCEDSEPFRQPVDLV--E 1346

Query: 681  LDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
              DY  II  PMDF T++  +   D   Y S  E   D+RLIF+NA  Y
Sbjct: 1347 YPDYRDIIDTPMDFGTVRETL---DAGNYDSPLEFCKDIRLIFSNAKAY 1392

---

>Q03330:GCN5_YEAST Histone acetyltransferase GCN5 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 439

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 29/79 (36%), Positives = 46/79 (58%)
 Frame = +3

Query: 600 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVR 779
           +  I+ ++ +H  + PFLQPV+    ++ DYY  I +PMD ST++ K+E     KY+ + 
Sbjct: 336 IQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLE---SNKYQKME 390

Query: 780 EIYSDVRLIFTNAMTYNDE 836
           +   D RL+F N   YN E
Sbjct: 391 DFIYDARLVFNNCRMYNGE 409

---

>Q9DE13:BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B - Gallus gallus|
            (Chicken)
          Length = 2130

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 31/80 (38%), Positives = 50/80 (62%)
 Frame = +3

Query: 609  IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
            I+ ++ +HE + PFL PV++    +  Y K+I KPMDFSTI++K+      +Y +V    
Sbjct: 2034 ILSELETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIRDKL---TSGQYPNVEAFS 2088

Query: 789  SDVRLIFTNAMTYNDELHDV 848
             DVRL+F N  T+N++  D+
Sbjct: 2089 LDVRLVFDNCETFNEDDSDI 2108

---

>Q756G9:GCN5_ASHGO Histone acetyltransferase GCN5 - Ashbya gossypii (Yeast)|
           (Eremothecium gossypii)
          Length = 452

 Score = 56.6 bits (135), Expect = 3e-07
 Identities = 28/79 (35%), Positives = 47/79 (59%)
 Frame = +3

Query: 600 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVR 779
           +  ++ ++ +H  + PFLQPV+    ++ DYY+ I +PMD ST++ K+E     +Y+ + 
Sbjct: 349 MQNVLTELQNHAAAWPFLQPVNRD--EVPDYYEFIKEPMDLSTMEIKLE---NNRYEKME 403

Query: 780 EIYSDVRLIFTNAMTYNDE 836
           +   D RLIF N   YN E
Sbjct: 404 DFIYDARLIFNNCRAYNGE 422

---

>Q9Z277:BAZ1B_MOUSE Bromodomain adjacent to zinc finger domain protein 1B - Mus musculus|
            (Mouse)
          Length = 1479

 Score = 56.6 bits (135), Expect = 3e-07
 Identities = 29/80 (36%), Positives = 48/80 (60%)
 Frame = +3

Query: 591  MRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYK 770
            +++   I+ ++  + +S PF +PV     + +DYY +I  PMDF TIQNK    +   Y+
Sbjct: 1341 LQKCEDILHKLVKYRFSWPFREPV--TRDEAEDYYDVIEHPMDFQTIQNKCSCGN---YR 1395

Query: 771  SVREIYSDVRLIFTNAMTYN 830
            SV+E  +D++ +F NA  YN
Sbjct: 1396 SVQEFLTDMKQVFANAELYN 1415

---

>Q924W6:TRI66_MOUSE Tripartite motif-containing protein 66 - Mus musculus (Mouse)|
          Length = 1242

 Score = 55.8 bits (133), Expect = 5e-07
 Identities = 33/100 (33%), Positives = 52/100 (52%)
 Frame = +3

Query: 531  SSRYAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITK 710
            ++RY   G R      M D  ++   ++  +  +  S PF +PV  +      YY+II +
Sbjct: 1054 NARYGHPGVRVLPGLSMYD-QKKCEKLVLSLCCNSLSLPFHEPVSPLARH---YYQIIKR 1109

Query: 711  PMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
            PMD S I+ K++ KD   Y +  E+ SDVRL+F N   +N
Sbjct: 1110 PMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFN 1149

---

>Q6CXW4:GCN5_KLULA Histone acetyltransferase GCN5 - Kluyveromyces lactis (Yeast)|
           (Candida sphaerica)
          Length = 516

 Score = 55.8 bits (133), Expect = 5e-07
 Identities = 27/79 (34%), Positives = 47/79 (59%)
 Frame = +3

Query: 600 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVR 779
           +  ++ ++ +H  + PFLQPV+    ++ DYY+ I +PMD S+++ K+   +G +Y+ + 
Sbjct: 413 MQNLLTELQNHAAAWPFLQPVNKE--EVPDYYEFIKEPMDLSSMEMKL---NGNRYEKME 467

Query: 780 EIYSDVRLIFTNAMTYNDE 836
               D RLIF N   YN E
Sbjct: 468 NFIYDARLIFNNCRAYNGE 486

---

>P45481:CBP_MOUSE CREB-binding protein - Mus musculus (Mouse)|
          Length = 2441

 Score = 55.8 bits (133), Expect = 5e-07
 Identities = 35/88 (39%), Positives = 47/88 (53%)
 Frame = +3

Query: 588  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
            LM  L  + RQ      S PF QPVD   L + DY+ I+  PMD STI+ K+   D  +Y
Sbjct: 1095 LMPTLEALYRQDPE---SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKL---DTGQY 1148

Query: 768  KSVREIYSDVRLIFTNAMTYNDELHDVH 851
            +   +   DVRL+F NA  YN +   V+
Sbjct: 1149 QEPWQYVDDVRLMFNNAWLYNRKTSRVY 1176

---

>P35817:BDF1_YEAST Bromodomain-containing factor 1 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 686

 Score = 55.5 bits (132), Expect = 6e-07
 Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
 Frame = +3

Query: 573 KGMPDLMRQLAGIIRQITSHE---WSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKM 743
           K +   M+    +++++ + +   ++ PFL+PVD V + L  Y+  + +PMD  TI  K+
Sbjct: 312 KRLQQAMKFCQSVLKELMAKKHASYNYPFLEPVDPVSMNLPTYFDYVKEPMDLGTIAKKL 371

Query: 744 EGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIM 857
              +  +Y+++ +   DVRL+F N  T+N +   V++M
Sbjct: 372 ---NDWQYQTMEDFERDVRLVFKNCYTFNPDGTIVNMM 406



 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = +3

Query: 645 PFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMT 824
           PFLQPVD V L +  Y+  I +PMD STI+ K+   +   Y+   +I  D  L+  N++ 
Sbjct: 172 PFLQPVDPVKLDIPFYFNYIKRPMDLSTIERKL---NVGAYEVPEQITEDFNLMVNNSIK 228

Query: 825 YN 830
           +N
Sbjct: 229 FN 230

---

>Q9UIF8:BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B - Homo sapiens|
            (Human)
          Length = 1972

 Score = 55.5 bits (132), Expect = 6e-07
 Identities = 30/80 (37%), Positives = 49/80 (61%)
 Frame = +3

Query: 609  IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
            I+ ++ +HE + PFL PV++    +  Y K+I KPMDFSTI+ K+      +Y ++    
Sbjct: 1876 ILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKL---SSGQYPNLETFA 1930

Query: 789  SDVRLIFTNAMTYNDELHDV 848
             DVRL+F N  T+N++  D+
Sbjct: 1931 LDVRLVFDNCETFNEDDSDI 1950

---

>O15016:TRI66_HUMAN Tripartite motif-containing protein 66 - Homo sapiens (Human)|
          Length = 1214

 Score = 55.1 bits (131), Expect = 8e-07
 Identities = 33/97 (34%), Positives = 50/97 (51%)
 Frame = +3

Query: 540  YAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMD 719
            Y   G R S    M D  ++   ++  +  +  S PF +PV  +      YY+II +PMD
Sbjct: 1029 YNQPGMRASPGLSMYD-QKKCEKLVLSLCCNNLSLPFHEPVSPLARH---YYQIIKRPMD 1084

Query: 720  FSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
             S I+ K++ KD   Y +  E+ SDVRL+F N   +N
Sbjct: 1085 LSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFN 1121

---

>Q9UUK2:GCN5_SCHPO Histone acetyltransferase gcn5 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 454

 Score = 55.1 bits (131), Expect = 8e-07
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
 Frame = +3

Query: 570 CKGMPDLMRQ---------LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDF 722
           CK M +L ++         L  +  ++ +H  S PF+QPV      + DYY++I  PMD 
Sbjct: 333 CKEMEELSKKPRPKPFFAVLEMLFTEMQNHPSSWPFMQPVSKE--DVPDYYEVIEHPMDL 390

Query: 723 STIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYND 833
           ST++ ++      +Y+SV E   D + IF N  +YND
Sbjct: 391 STMEFRLRNN---QYESVEEFIRDAKYIFDNCRSYND 424

---

>Q921C3:BRWD1_MOUSE Bromodomain and WD repeat domain-containing protein 1 - Mus musculus|
            (Mouse)
          Length = 2304

 Score = 55.1 bits (131), Expect = 8e-07
 Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
 Frame = +3

Query: 507  SAGRRAIGS--SRYAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQ 680
            S+GRR + +   R  A+G  +S      D  RQ   ++  I   E S PF QPVD+   +
Sbjct: 1297 SSGRRKVHNWKRRSRASGCIES------DWRRQCKALLILIFQCEDSEPFRQPVDLD--E 1348

Query: 681  LDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
              DY  II  PMDF T++  +E  +   Y S  E   D+RLIF+NA  Y
Sbjct: 1349 YPDYRDIIDTPMDFGTVRETLEAGN---YDSPVEFCKDIRLIFSNAKAY 1394

---

>Q8WZM0:GCN5_YARLI Histone acetyltransferase GCN5 - Yarrowia lipolytica (Candida|
           lipolytica)
          Length = 464

 Score = 54.7 bits (130), Expect = 1e-06
 Identities = 26/76 (34%), Positives = 46/76 (60%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           ++ ++ +H  + PF Q V+    ++ DYY++I +PMD ST++ ++E      YK++ E  
Sbjct: 364 VLSELQNHASAWPFAQAVNRD--EVPDYYEVIKEPMDLSTMEQRLE---ADSYKTMEEFV 418

Query: 789 SDVRLIFTNAMTYNDE 836
            D RL+F N   YN+E
Sbjct: 419 YDARLVFNNCRAYNNE 434

---

>Q6BER5:NU301_CAEEL Nucleosome-remodeling factor subunit NURF301-like - Caenorhabditis|
            elegans
          Length = 2266

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 30/74 (40%), Positives = 41/74 (55%)
 Frame = +3

Query: 609  IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
            ++  +  H  S PF  PVD+   +  DY K I KPMD STI  K+E    T+Y  + +  
Sbjct: 2114 LLELLLEHRMSTPFRNPVDLN--EFPDYEKFIKKPMDLSTITKKVE---RTEYLYLSQFV 2168

Query: 789  SDVRLIFTNAMTYN 830
            +DV  +F NA TYN
Sbjct: 2169 NDVNQMFENAKTYN 2182

---

>Q9W0T1:NU301_DROME Nucleosome-remodeling factor subunit NURF301 - Drosophila|
            melanogaster (Fruit fly)
          Length = 2669

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
 Frame = +3

Query: 561  DSNCKGMPDL----MRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFST 728
            D+N   M  L    + +L  +I+Q+  H+ + PF++PVD    +  DYYK+I +PMD   
Sbjct: 2548 DANAANMKKLTSNDVEELKNLIKQMQLHKSAWPFMEPVDPK--EAPDYYKVIKEPMDLKR 2605

Query: 729  IQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
            ++ K+E    TK   + E   D+  IF N   YN
Sbjct: 2606 MEIKLESNTYTK---LSEFIGDMTKIFDNCRYYN 2636

---

>Q6FTW5:GCN5_CANGA Histone acetyltransferase GCN5 - Candida glabrata (Yeast)|
           (Torulopsis glabrata)
          Length = 546

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 28/79 (35%), Positives = 46/79 (58%)
 Frame = +3

Query: 600 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVR 779
           +  I+ ++ +H  + PFL+PV+    ++ DYY+ I +PMD ST++ K+E     KY+ + 
Sbjct: 443 IQNILVELQNHAAAWPFLRPVNKE--EVPDYYEFIKEPMDLSTMELKLE---NNKYEKME 497

Query: 780 EIYSDVRLIFTNAMTYNDE 836
           E   D RL+  N   YN E
Sbjct: 498 EFIYDARLVCNNCRLYNGE 516

---

>Q6BGW1:GCN5_DEBHA Histone acetyltransferase GCN5 - Debaryomyces hansenii (Yeast)|
           (Torulaspora hansenii)
          Length = 455

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 28/74 (37%), Positives = 44/74 (59%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           ++ ++T+H  + PF  PV+    ++ DYY +I +PMD ST++ K+E     KY S  +  
Sbjct: 354 LLSELTNHPSAWPFSTPVNKE--EVGDYYDVIKEPMDLSTMELKLE---NDKYDSFDQFL 408

Query: 789 SDVRLIFTNAMTYN 830
            D RLIF N  +YN
Sbjct: 409 YDARLIFNNCRSYN 422

---

>O15164:TIF1A_HUMAN Transcription intermediary factor 1-alpha - Homo sapiens (Human)|
          Length = 1050

 Score = 53.1 bits (126), Expect = 3e-06
 Identities = 35/120 (29%), Positives = 55/120 (45%)
 Frame = +3

Query: 630  HEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIF 809
            HE S  F  PV    L + DYYKII  PMD STI+ +++ +D + Y    +  +D RLIF
Sbjct: 918  HEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQ-EDYSMYSKPEDFVADFRLIF 973

Query: 810  TNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQMETNDAPTTDTSPEDAI 989
             N   +N+   +V                   P+    + + + E+ D   +D S +D +
Sbjct: 974  QNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPKPEFRNESEDNKFSDDSDDDFV 1033

---

>Q92793:CBP_HUMAN CREB-binding protein - Homo sapiens (Human)|
          Length = 2442

 Score = 52.8 bits (125), Expect = 4e-06
 Identities = 34/88 (38%), Positives = 46/88 (52%)
 Frame = +3

Query: 588  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
            LM  L  + RQ      S PF QPVD   L + DY+ I+  PMD STI+ K+   D  +Y
Sbjct: 1094 LMPTLEALYRQDPE---SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKL---DTGQY 1147

Query: 768  KSVREIYSDVRLIFTNAMTYNDELHDVH 851
            +   +   DV L+F NA  YN +   V+
Sbjct: 1148 QEPWQYVDDVWLMFNNAWLYNRKTSRVY 1175

---

>Q64127:TIF1A_MOUSE Transcription intermediary factor 1-alpha - Mus musculus (Mouse)|
          Length = 1051

 Score = 52.4 bits (124), Expect = 5e-06
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
 Frame = +3

Query: 630  HEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIF 809
            HE S  F  PV    L + DYYKII  PMD STI+ +++ +D   Y    +  +D RLIF
Sbjct: 919  HEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQ-EDYCMYTKPEDFVADFRLIF 974

Query: 810  TNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQMETNDAPTTDTSPEDAI 989
             N   +N+   +V                   P+    + + + E  D   +D S +D +
Sbjct: 975  QNCAEFNEPDSEVANAGIKLESYFEELLKNLYPEKRFPKVEFRHEAEDCKFSDDSDDDFV 1034

Query: 990  ---AQLAKDTDD 1016
                +  K T+D
Sbjct: 1035 QPRKKRLKSTED 1046

---

>Q09472:EP300_HUMAN Histone acetyltransferase p300 - Homo sapiens (Human)|
          Length = 2414

 Score = 52.4 bits (124), Expect = 5e-06
 Identities = 33/88 (37%), Positives = 46/88 (52%)
 Frame = +3

Query: 588  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
            LM  L  + RQ      S PF QPVD   L + DY+ I+  PMD STI+ K+   D  +Y
Sbjct: 1058 LMPTLEALYRQDPE---SLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKL---DTGQY 1111

Query: 768  KSVREIYSDVRLIFTNAMTYNDELHDVH 851
            +   +   D+ L+F NA  YN +   V+
Sbjct: 1112 QEPWQYVDDIWLMFNNAWLYNRKTSRVY 1139

---

>Q8R3B7:BRD8_MOUSE Bromodomain-containing protein 8 - Mus musculus (Mouse)|
          Length = 951

 Score = 52.0 bits (123), Expect = 7e-06
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +3

Query: 615  RQITSHEWSAPFLQPVDVVGLQLDD----YYKIITKPMDFSTIQNKMEGKDGTKYKSVRE 782
            R   +H ++  FLQPV       DD    Y+ I+ +PMD STI+  +E       +S  E
Sbjct: 794  RAAANHRYANVFLQPVT------DDIAPGYHSIVQRPMDLSTIKKNIENG---LIRSTAE 844

Query: 783  IYSDVRLIFTNAMTYNDELHDVHIMA 860
               D+ L+F NA+ YN   HDV+ MA
Sbjct: 845  FQRDIMLMFQNAVMYNSSDHDVYHMA 870

---

>Q9H0E9:BRD8_HUMAN Bromodomain-containing protein 8 - Homo sapiens (Human)|
          Length = 1235

 Score = 52.0 bits (123), Expect = 7e-06
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +3

Query: 615 RQITSHEWSAPFLQPVDVVGLQLDD----YYKIITKPMDFSTIQNKMEGKDGTKYKSVRE 782
           R   +H ++  FLQPV       DD    Y+ I+ +PMD STI+  +E       +S  E
Sbjct: 721 RAAANHRYANVFLQPVT------DDIAPGYHSIVQRPMDLSTIKKNIENG---LIRSTAE 771

Query: 783 IYSDVRLIFTNAMTYNDELHDVHIMA 860
              D+ L+F NA+ YN   HDV+ MA
Sbjct: 772 FQRDIMLMFQNAVMYNSSDHDVYHMA 797



 Score = 51.6 bits (122), Expect = 9e-06
 Identities = 27/89 (30%), Positives = 50/89 (56%)
 Frame = +3

Query: 594  RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKS 773
            + L  + + I SH +S+PFL+PV     Q   Y  ++ +PMD ++++  +      + ++
Sbjct: 1110 KTLLPVWKMIASHRFSSPFLKPVS--ERQAPGYKDVVKRPMDLTSLKRNL---SKGRIRT 1164

Query: 774  VREIYSDVRLIFTNAMTYNDELHDVHIMA 860
            + +   D+ L+F NA+ YND  H V+ MA
Sbjct: 1165 MAQFLRDLMLMFQNAVMYNDSDHHVYHMA 1193

---

>P34545:CBP1_CAEEL Protein cbp-1 - Caenorhabditis elegans|
          Length = 2056

 Score = 51.6 bits (122), Expect = 9e-06
 Identities = 27/82 (32%), Positives = 45/82 (54%)
 Frame = +3

Query: 585  DLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTK 764
            DL++ L  +  ++   E +APF  PVD   L + DY++II +PMD  T+  K+      +
Sbjct: 868  DLIKFLLPVWEKLDKSEDAAPFRVPVDAKLLNIPDYHEIIKRPMDLETVHKKLY---AGQ 924

Query: 765  YKSVREIYSDVRLIFTNAMTYN 830
            Y++  +   D+ L+  NA  YN
Sbjct: 925  YQNAGQFCDDIWLMLDNAWLYN 946

---

>Q12830:BPTF_HUMAN Nucleosome remodeling factor subunit BPTF - Homo sapiens (Human)|
          Length = 2907

 Score = 50.1 bits (118), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 45/77 (58%)
 Frame = +3

Query: 600  LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVR 779
            L  ++R + +H+ + PFL+PVD       DYY +I +PMD +T++ +++ +    Y+ + 
Sbjct: 2797 LKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRR---YYEKLT 2851

Query: 780  EIYSDVRLIFTNAMTYN 830
            E  +D+  IF N   YN
Sbjct: 2852 EFVADMTKIFDNCRYYN 2868

---

>Q92831:PCAF_HUMAN Histone acetyltransferase PCAF - Homo sapiens (Human)|
          Length = 832

 Score = 48.9 bits (115), Expect = 6e-05
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
 Frame = +3

Query: 450  VLERRVNEVVGFYDGKKHGSAGRR--------AIGSSRYAANGARDSNCKGMPD-LMRQL 602
            ++ER+  ++   Y G      G R         I  + +  +G   S     PD L   L
Sbjct: 673  LIERKQAQIRKVYPGLSCFKDGVRQIPIESIPGIRETGWKPSGKEKSKEPRDPDQLYSTL 732

Query: 603  AGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVRE 782
              I++Q+ SH+ + PF++PV     +   YY++I  PMD  T+  +++ +    Y S + 
Sbjct: 733  KSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNR---YYVSKKL 787

Query: 783  IYSDVRLIFTNAMTYN 830
              +D++ +FTN   YN
Sbjct: 788  FMADLQRVFTNCKEYN 803

---

>Q9UIF9:BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A - Homo sapiens|
            (Human)
          Length = 1878

 Score = 48.9 bits (115), Expect = 6e-05
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
 Frame = +3

Query: 609  IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
            I+ ++ SH+ + PFL+PV+     +  Y +II  PMDFST++ ++  + G  Y S  E  
Sbjct: 1778 ILMEMESHDAAWPFLEPVNP--RLVSGYRRIIKNPMDFSTMRERLL-RGG--YTSSEEFA 1832

Query: 789  SDVRLIFTNAMTYNDELHDV----HIM 857
            +D  L+F N  T+N++  +V    HIM
Sbjct: 1833 ADALLVFDNCQTFNEDDSEVGKAGHIM 1859

---

>Q9NRL2:BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A - Homo sapiens|
            (Human)
          Length = 1556

 Score = 48.9 bits (115), Expect = 6e-05
 Identities = 29/93 (31%), Positives = 48/93 (51%)
 Frame = +3

Query: 552  GARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTI 731
            G R S  +G    +     ++ ++  H+ S PFL+ V  +  Q+ DYY II KP+  + I
Sbjct: 1422 GRRSSGRQGGVHELSAFEQLVVELVRHDDSWPFLKLVSKI--QVPDYYDIIKKPIALNII 1479

Query: 732  QNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
            + K+   +  +YK   E   D+ L+F+N   YN
Sbjct: 1480 REKV---NKCEYKLASEFIDDIELMFSNCFEYN 1509

---

>Q9ULD4:BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 - Homo sapiens|
           (Human)
          Length = 1205

 Score = 48.5 bits (114), Expect = 8e-05
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +3

Query: 648 FLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
           F +PV++   ++ DY + I+KPMDFST++ K+E      Y+++ E   D  LI TN M Y
Sbjct: 614 FAEPVNLS--EVPDYLEFISKPMDFSTMRRKLESH---LYRTLEEFEEDFNLIVTNCMKY 668

Query: 828 N 830
           N
Sbjct: 669 N 669

---

>Q338B9:GCN5_ORYSJ Histone acetyltransferase GCN5 - Oryza sativa subsp. japonica|
           (Rice)
          Length = 511

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 47/84 (55%)
 Frame = +3

Query: 579 MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDG 758
           + +LMR L   ++ +  H  + PF +PVD     + DYY II  P+D  T+  ++E +  
Sbjct: 403 LTNLMRSL---LKNMNEHPDAWPFKEPVD--SRDVPDYYDIIKDPIDLKTMSKRVESEQ- 456

Query: 759 TKYKSVREIYSDVRLIFTNAMTYN 830
             Y ++    +D++ +F+NA TYN
Sbjct: 457 -YYVTLEMFVADMKRMFSNAKTYN 479

---

>Q9BXF3:CECR2_HUMAN Cat eye syndrome critical region protein 2 - Homo sapiens (Human)|
          Length = 1484

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 44/76 (57%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           ++  + +H+ S PFL+PVD       +YY+II  PMD S+++ K+   +G  Y +  E  
Sbjct: 446 VLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKL---NGGLYCTKEEFV 500

Query: 789 SDVRLIFTNAMTYNDE 836
           +D++ +F N   YN E
Sbjct: 501 NDMKTMFRNCRKYNGE 516

---

>Q91YE5:BAZ2A_MOUSE Bromodomain adjacent to zinc finger domain protein 2A - Mus musculus|
            (Mouse)
          Length = 1850

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
 Frame = +3

Query: 609  IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
            I+ ++ SH+ + PFL+PV+     +  Y ++I  PMDFST++ ++  + G  Y S  E  
Sbjct: 1750 ILMEMESHDAAWPFLEPVNP--RLVSGYRRVIKNPMDFSTMRERLL-RGG--YTSSEEFA 1804

Query: 789  SDVRLIFTNAMTYNDELHDV----HIM 857
            +D  L+F N  T+N++  +V    H+M
Sbjct: 1805 ADALLVFDNCQTFNEDDSEVGKAGHVM 1831

---

>P51123:TAF1_DROME Transcription initiation factor TFIID subunit 1 - Drosophila|
            melanogaster (Fruit fly)
          Length = 2129

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 29/71 (40%), Positives = 38/71 (53%)
 Frame = +3

Query: 618  QITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDV 797
            QI     S PFL+PV+    Q+ DYY +I +PMD  TI   +E     +Y S  E  +D+
Sbjct: 1607 QIKQLPESWPFLKPVNKK--QVKDYYTVIKRPMDLETIGKNIEAH---RYHSRAEYLADI 1661

Query: 798  RLIFTNAMTYN 830
             LI TN   YN
Sbjct: 1662 ELIATNCEQYN 1672



 Score = 41.6 bits (96), Expect = 0.009
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +3

Query: 642  APFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAM 821
            +PFL PV     ++ DYY+++TKPMD  T++  +  +   +Y S      D++ I  N++
Sbjct: 1493 SPFLFPVSAK--KVPDYYRVVTKPMDLQTMREYIRQR---RYTSREMFLEDLKQIVDNSL 1547

Query: 822  TYN 830
             YN
Sbjct: 1548 IYN 1550

---

>O88379:BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A - Mus musculus|
            (Mouse)
          Length = 1555

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 34/114 (29%), Positives = 57/114 (50%)
 Frame = +3

Query: 489  DGKKHGSAGRRAIGSSRYAANGARDSNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDV 668
            + K+ G   R++  SS    N  R S  +G    +     ++ ++  H+ S PFL+ V  
Sbjct: 1402 ESKRRGRK-RQSTESSPVPLN-RRSSGRQGGVHELSAFEQLVVELVRHDDSWPFLKLVSK 1459

Query: 669  VGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
            +  Q+ DYY II KP+  + I+ K+   +  +YK   E   D+ L+F+N   YN
Sbjct: 1460 I--QVPDYYDIIKKPIALNIIREKV---NKCEYKLASEFIDDIELMFSNCFEYN 1508

---

>Q9AR19:GCN5_ARATH Histone acetyltransferase GCN5 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 568

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
 Frame = +3

Query: 549 NGARD--SNCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDF 722
           NG+ D  +N K +  LMR L   ++ +  H  + PF +PVD     + DYY II  P+D 
Sbjct: 448 NGSADMVTNQKQLNALMRAL---LKTMQDHADAWPFKEPVD--SRDVPDYYDIIKDPIDL 502

Query: 723 STIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
             I  ++E +    Y ++    +D R +F N  TYN
Sbjct: 503 KVIAKRVESEQ--YYVTLDMFVADARRMFNNCRTYN 536

---

>Q5R8B0:BRD7_PONPY Bromodomain-containing protein 7 - Pongo pygmaeus (Orangutan)|
          Length = 651

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
           L   L  ++RQ+   + SA F  PV         Y  II  PMDFST++ K++  D   Y
Sbjct: 136 LQEALNQLMRQLQRKDPSAFFSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNND---Y 190

Query: 768 KSVREIYSDVRLIFTNAMTYN 830
           +S+ E+  + +L+ TNAM YN
Sbjct: 191 QSIEELKDNFKLMCTNAMIYN 211

---

>O88665:BRD7_MOUSE Bromodomain-containing protein 7 - Mus musculus (Mouse)|
          Length = 651

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
           L   L  ++RQ+   + SA F  PV         Y  II  PMDFST++ K++  D   Y
Sbjct: 136 LQEALNQLMRQLQRKDPSAFFSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNND---Y 190

Query: 768 KSVREIYSDVRLIFTNAMTYN 830
           +S+ E+  + +L+ TNAM YN
Sbjct: 191 QSIEELKDNFKLMCTNAMIYN 211

---

>Q9NPI1:BRD7_HUMAN Bromodomain-containing protein 7 - Homo sapiens (Human)|
          Length = 651

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
           L   L  ++RQ+   + SA F  PV         Y  II  PMDFST++ K++  D   Y
Sbjct: 136 LQEALNQLMRQLQRKDPSAFFSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNND---Y 190

Query: 768 KSVREIYSDVRLIFTNAMTYN 830
           +S+ E+  + +L+ TNAM YN
Sbjct: 191 QSIEELKDNFKLMCTNAMIYN 211

---

>Q6NVM8:BRD9_XENTR Bromodomain-containing protein 9 - Xenopus tropicalis (Western|
           clawed frog) (Silurana tropicalis)
          Length = 596

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPV-DVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTK 764
           L + L   +RQ+   + +  F  PV D +      Y+ II  PMDFST++ K+   +   
Sbjct: 153 LQQLLEYFLRQLQRKDPNGFFAFPVTDQIA---PGYFMIIKNPMDFSTMKEKISQNE--- 206

Query: 765 YKSVREIYSDVRLIFTNAMTYN 830
           YKSV E  +D +L+  NAMTYN
Sbjct: 207 YKSVTEFKADFKLMCDNAMTYN 228

---

>Q6GLP7:BRD9_XENLA Bromodomain-containing protein 9 - Xenopus laevis (African clawed|
           frog)
          Length = 527

 Score = 46.2 bits (108), Expect = 4e-04
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPV-DVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTK 764
           L + L   +RQ+   + +  F  PV D +      Y+ II  PMDFST++ K+   +   
Sbjct: 83  LQQLLEYFLRQLQRKDPNGFFAFPVTDQIA---PGYFMIIKNPMDFSTMKEKISQDE--- 136

Query: 765 YKSVREIYSDVRLIFTNAMTYN 830
           YKSV E  +D +L+  NAMTYN
Sbjct: 137 YKSVTEFKADFKLMCDNAMTYN 158

---

>Q5ZKG2:BRD7_CHICK Bromodomain-containing protein 7 - Gallus gallus (Chicken)|
          Length = 651

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKY 767
           L   L  ++RQ+   + S+ F  PV         Y  II  PMDFST++ K++      Y
Sbjct: 136 LQEALNQLMRQLQRKDPSSFFSFPV--TDFIAPGYSMIIKNPMDFSTMKEKIKNNG---Y 190

Query: 768 KSVREIYSDVRLIFTNAMTYN 830
           +S+ E+  + +L+ TNAMTYN
Sbjct: 191 QSIEELKDNFKLMCTNAMTYN 211

---

>Q09948:BRD1_SCHPO Bromodomain-containing protein brd1 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 542

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
           DYY+II KP+ +  ++NK   K G KY S+ + Y D+RL+ +NA TYN
Sbjct: 48  DYYQIIQKPICYKMMRNK--AKTG-KYLSMGDFYDDIRLMVSNAQTYN 92



 Score = 33.5 bits (75), Expect = 2.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
           DYY+II  PM    ++ +   K G +Y ++     D+  +F NA TYN
Sbjct: 181 DYYEIIKSPMTIKMLEKRF--KKG-EYTTLESFVKDLNQMFINAKTYN 225

---

>Q67W65:TAF1_ORYSJ Transcription initiation factor TFIID subunit 1 - Oryza sativa subsp.|
            japonica (Rice)
          Length = 1810

 Score = 45.1 bits (105), Expect = 9e-04
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +3

Query: 597  QLAGIIRQITSH--EWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYK 770
            +L+ I+ +I  H    S  FL    V   +  DY+ II +PMD  TI++K+   +   YK
Sbjct: 1696 ELSNILEKIVDHLRTMSCSFLFRKPVTKKEAPDYFDIIERPMDLGTIRDKVRKME---YK 1752

Query: 771  SVREIYSDVRLIFTNAMTYNDELH 842
            +  +   DV  I  NA TYN   H
Sbjct: 1753 NREDFRHDVAQIALNAHTYNLNRH 1776

---

>Q80UV9:TAF1_MOUSE Transcription initiation factor TFIID subunit 1 - Mus musculus|
            (Mouse)
          Length = 1891

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 30/90 (33%), Positives = 43/90 (47%)
 Frame = +3

Query: 579  MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDG 758
            M  L   L  II  +     + PF  PV+   ++  DYYKIIT+PMD  T++  +  +  
Sbjct: 1403 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 1458

Query: 759  TKYKSVREIYSDVRLIFTNAMTYNDELHDV 848
              Y S  E    + LI  N+ TYN   H +
Sbjct: 1459 -LYPSREEFREHLELIVKNSATYNGPKHSL 1487



 Score = 42.4 bits (98), Expect = 0.006
 Identities = 25/64 (39%), Positives = 33/64 (51%)
 Frame = +3

Query: 639  SAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNA 818
            S PF  PV+   +   DYYK+I  PMD  TI+  +      KY+S      DV LI  N+
Sbjct: 1546 SWPFHHPVNKKFVP--DYYKVIVSPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 1600

Query: 819  MTYN 830
            + YN
Sbjct: 1601 VKYN 1604

---

>Q60544:TAF1_MESAU Transcription initiation factor TFIID subunit 1 - Mesocricetus|
            auratus (Golden hamster)
          Length = 1865

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 30/90 (33%), Positives = 43/90 (47%)
 Frame = +3

Query: 579  MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDG 758
            M  L   L  II  +     + PF  PV+   ++  DYYKIIT+PMD  T++  +  +  
Sbjct: 1377 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 1432

Query: 759  TKYKSVREIYSDVRLIFTNAMTYNDELHDV 848
              Y S  E    + LI  N+ TYN   H +
Sbjct: 1433 -LYPSREEFREHLELIVKNSATYNGPKHSL 1461



 Score = 42.4 bits (98), Expect = 0.006
 Identities = 25/64 (39%), Positives = 33/64 (51%)
 Frame = +3

Query: 639  SAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNA 818
            S PF  PV+   +   DYYK+I  PMD  TI+  +      KY+S      DV LI  N+
Sbjct: 1520 SWPFHHPVNKKFVP--DYYKVIVSPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 1574

Query: 819  MTYN 830
            + YN
Sbjct: 1575 VKYN 1578

---

>P21675:TAF1_HUMAN Transcription initiation factor TFIID subunit 1 - Homo sapiens|
            (Human)
          Length = 1872

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 30/90 (33%), Positives = 43/90 (47%)
 Frame = +3

Query: 579  MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDG 758
            M  L   L  II  +     + PF  PV+   ++  DYYKIIT+PMD  T++  +  +  
Sbjct: 1382 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 1437

Query: 759  TKYKSVREIYSDVRLIFTNAMTYNDELHDV 848
              Y S  E    + LI  N+ TYN   H +
Sbjct: 1438 -LYPSREEFREHLELIVKNSATYNGPKHSL 1466



 Score = 42.4 bits (98), Expect = 0.006
 Identities = 25/64 (39%), Positives = 33/64 (51%)
 Frame = +3

Query: 639  SAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNA 818
            S PF  PV+   +   DYYK+I  PMD  TI+  +      KY+S      DV LI  N+
Sbjct: 1525 SWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 1579

Query: 819  MTYN 830
            + YN
Sbjct: 1580 VKYN 1583

---

>P51532:SMCA4_HUMAN Probable global transcription activator SNF2L4 - Homo sapiens (Human)|
          Length = 1647

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
 Frame = +3

Query: 582  PDLMRQLAGIIRQITSHEWSAPFLQPVDVV-----GLQLDDYYKIITKPMDFSTIQNKME 746
            P+L +++  I+  +  ++ S+   Q  +V        +L +YY++I KP+DF  I+ ++ 
Sbjct: 1456 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 1515

Query: 747  GKDGTKYKSVREIYSDVRLIFTNAMTYNDE 836
                 KY+S+ ++  DV L+  NA T+N E
Sbjct: 1516 NH---KYRSLNDLEKDVMLLCQNAQTFNLE 1542

---

>Q6RI45:BRWD3_HUMAN Bromodomain and WD repeat domain-containing protein 3 - Homo sapiens|
            (Human)
          Length = 1802

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
 Frame = +3

Query: 402  VDSFRRQVDDLASKTDVLERRVNEVVGFYDGKKHGSAGRRAIGSSRYAANGARDSNCKGM 581
            +D++ +   +  + TD  E    E+V         S+GRR          G R S  K  
Sbjct: 1251 LDTYNKIKAEERNSTDAEED--TEIVDLDSDGPGTSSGRRV------KCRGRRQS-LKCN 1301

Query: 582  PDLMR-QLAGIIRQITSHEWSAPFLQPVDVVGLQ-----------------------LDD 689
            PD  + Q   ++  I   E S PF QP D++                           +D
Sbjct: 1302 PDAWKKQCKELLSLIYEREDSEPFRQPADLLSYPGHQEQEGESSESVVPERQQDSSLSED 1361

Query: 690  YYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
            Y  +I  P+DFST++  +E  +   Y S  E Y DVR IF N+  Y
Sbjct: 1362 YQDVIDTPVDFSTVKETLEAGN---YGSPLEFYKDVRQIFNNSKAY 1404

---

>Q3UQU0:BRD9_MOUSE Bromodomain-containing protein 9 - Mus musculus (Mouse)|
          Length = 596

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 588 LMRQLAGIIRQITSHEWSAPFLQPV-DVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTK 764
           + R L   +RQ+   +    F  PV D +      Y  II  PMDF T+++K+   +   
Sbjct: 141 IQRLLEHFLRQLQRKDPHGFFAFPVTDAIA---PGYSMIIKHPMDFGTMKDKIVANE--- 194

Query: 765 YKSVREIYSDVRLIFTNAMTYN 830
           YKSV E  +D +L+  NAMTYN
Sbjct: 195 YKSVTEFKADFKLMCDNAMTYN 216

---

>A2AHJ4:BRWD3_MOUSE Bromodomain and WD repeat domain-containing protein 3 - Mus musculus|
            (Mouse)
          Length = 1799

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
 Frame = +3

Query: 531  SSRYAANGARDSNCKGMPDLMR-QLAGIIRQITSHEWSAPFLQPVDVVGLQL-------- 683
            S R A    R  + K  PD  + Q   ++  I   E S PF QP D     +        
Sbjct: 1283 SGRRAKCRGRRQSLKCNPDAWKKQCEELLSLIYEREDSEPFRQPADPQSYPVQQQQEGES 1342

Query: 684  --------------DDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAM 821
                          +DY   I  PMDFST++  +E  +   Y S  E Y DVR IF+N+ 
Sbjct: 1343 SQSVPPDRQDPSLSEDYQDGIDTPMDFSTVKETLESGN---YDSPLEFYKDVRQIFSNSK 1399

Query: 822  TY 827
             Y
Sbjct: 1400 AY 1401

---

>O95696:BRD1_HUMAN Bromodomain-containing protein 1 - Homo sapiens (Human)|
          Length = 1058

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 25/77 (32%), Positives = 41/77 (53%)
 Frame = +3

Query: 600 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVR 779
           L  ++ Q+   + +  F QPV +   ++ DY   I  PMDF+T++ ++E +    YK++ 
Sbjct: 571 LRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQG---YKNLH 625

Query: 780 EIYSDVRLIFTNAMTYN 830
           E   D  LI  N M YN
Sbjct: 626 EFEEDFDLIIDNCMKYN 642

---

>Q9ULI0:ATD2B_HUMAN ATPase family AAA domain-containing protein 2B - Homo sapiens (Human)|
          Length = 1458

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 22/63 (34%), Positives = 38/63 (60%)
 Frame = +3

Query: 648  FLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
            F +PVD+   ++ DY ++I +PMD ST+  K+   D   Y + ++   D+ LI +NA+ Y
Sbjct: 983  FSKPVDIE--EVSDYLEVIKEPMDLSTVITKI---DKHNYLTAKDFLKDIDLICSNALEY 1037

Query: 828  NDE 836
            N +
Sbjct: 1038 NPD 1040

---

>Q8IZX4:TAF1L_HUMAN Transcription initiation factor TFIID 210 kDa subunit - Homo sapiens|
            (Human)
          Length = 1826

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 31/90 (34%), Positives = 42/90 (46%)
 Frame = +3

Query: 579  MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDG 758
            M  L   L  II  +     + PF  PV+   ++  DYYKIIT+PMD  T++   E    
Sbjct: 1401 MVTLSSILESIINDMRDLPNTHPFHTPVNAKVVK--DYYKIITRPMDLQTLR---ENVRK 1455

Query: 759  TKYKSVREIYSDVRLIFTNAMTYNDELHDV 848
              Y S  E    + LI  N+ TYN   H +
Sbjct: 1456 CLYPSREEFREHLELIVKNSATYNGPKHSL 1485



 Score = 40.0 bits (92), Expect = 0.028
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = +3

Query: 639  SAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNA 818
            S PF  PV+   +   DYYK+I  P+D  TI+  +      KY+S      DV LI  N+
Sbjct: 1544 SWPFHHPVNKKFVP--DYYKMIVNPVDLETIRKNISKH---KYQSRESFLDDVNLILANS 1598

Query: 819  MTYN 830
            + YN
Sbjct: 1599 VKYN 1602

---

>Q86U86:PB1_HUMAN Protein polybromo-1 - Homo sapiens (Human)|
          Length = 1689

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDE----LHDVHI 854
           DYYKII +PMD   I++ +      KY     +  D++L+F NA  YN+E     +D HI
Sbjct: 557 DYYKIILEPMDLKIIEHNIR---NDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHI 613

Query: 855 M 857
           +
Sbjct: 614 L 614



 Score = 42.4 bits (98), Expect = 0.006
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +3

Query: 675 LQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYND 833
           +Q  DYY II +P+D  TI  +++      YKS+  +  D+ L+  NA TYN+
Sbjct: 215 VQYPDYYAIIKEPIDLKTIAQRIQ---NGSYKSIHAMAKDIDLLAKNAKTYNE 264



 Score = 41.2 bits (95), Expect = 0.012
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 678 QLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYND 833
           +L DYY  I KPMD   I++ M      KY+ +  +  D  ++F NA TYN+
Sbjct: 692 ELPDYYLTIKKPMDMEKIRSHMM---ANKYQDIDSMVEDFVMMFNNACTYNE 740



 Score = 38.1 bits (87), Expect = 0.10
 Identities = 16/47 (34%), Positives = 31/47 (65%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
           DYY+++++P+D   IQ K++ ++   Y  V  + +D +L+F NA +Y
Sbjct: 83  DYYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLLFNNAKSY 126

---

>Q90941:PB1_CHICK Protein polybromo-1 - Gallus gallus (Chicken)|
          Length = 1633

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 22/53 (41%), Positives = 34/53 (64%)
 Frame = +3

Query: 675 LQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYND 833
           +Q  DYY II +P+D  TI  +++  +GT YKS+  +  D+ L+  NA TYN+
Sbjct: 212 VQYPDYYAIIKEPIDLKTIAQRIQ--NGT-YKSIHAMAKDIDLLAKNAKTYNE 261



 Score = 42.4 bits (98), Expect = 0.006
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDE----LHDVHI 854
           DYYKII +PMD   I++ +      KY     +  D++L+F NA  YN+E     +D H+
Sbjct: 555 DYYKIILEPMDLKMIEHNIR---NDKYVGEEAMIDDMKLMFRNARHYNEEGSQVYNDAHM 611

Query: 855 M 857
           +
Sbjct: 612 L 612



 Score = 39.3 bits (90), Expect = 0.047
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 678 QLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYND 833
           +L DYY  I KP+D   I++ M      KY+ +  +  D  ++F NA TYN+
Sbjct: 690 ELPDYYITIKKPVDMEKIRSHMMAN---KYQDIDSMVEDFVMMFNNACTYNE 738



 Score = 38.1 bits (87), Expect = 0.10
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
           DYY+++++P+D   IQ K++ ++   Y  V  + +D +L+F NA  Y
Sbjct: 84  DYYEVVSQPIDLMKIQQKLKMEE---YDDVNVLTADFQLLFNNAKAY 127

---

>Q8CDM1:ATAD2_MOUSE ATPase family AAA domain-containing protein 2 - Mus musculus|
           (Mouse)
          Length = 1040

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = +3

Query: 585 DLMRQLAGIIRQITSH----EWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGK 752
           D  R+L   +R +T      +    F +PVD    ++ DY  +I +PMD S++ +K+   
Sbjct: 633 DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKI--- 687

Query: 753 DGTKYKSVREIYSDVRLIFTNAMTYNDE 836
           D  KY +V++   D+ LI +NA+ YN +
Sbjct: 688 DLHKYLTVKDYLKDIDLICSNALEYNPD 715

---

>P51531:SMCA2_HUMAN Probable global transcription activator SNF2L2 - Homo sapiens (Human)|
          Length = 1586

 Score = 42.7 bits (99), Expect = 0.004
 Identities = 20/53 (37%), Positives = 34/53 (64%)
 Frame = +3

Query: 678  QLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDE 836
            +L +YY++I KP+DF  I+ ++      KY+S+ ++  DV L+  NA T+N E
Sbjct: 1431 ELPEYYELIRKPVDFKKIKERIRNH---KYRSLGDLEKDVMLLCHNAQTFNLE 1480

---

>Q9H8M2:BRD9_HUMAN Bromodomain-containing protein 9 - Homo sapiens (Human)|
          Length = 501

 Score = 42.7 bits (99), Expect = 0.004
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = +3

Query: 690 YYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
           Y  II  PMDF T+++K+   +   YKSV E  +D +L+  NAMTYN
Sbjct: 57  YSMIIKHPMDFGTMKDKIVANE---YKSVTEFKADFKLMCDNAMTYN 100

---

>Q5RDX4:ATAD2_PONPY ATPase family AAA domain-containing protein 2 - Pongo pygmaeus|
            (Orangutan)
          Length = 1091

 Score = 42.7 bits (99), Expect = 0.004
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = +3

Query: 585  DLMRQLAGIIRQITSH----EWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGK 752
            D  R+L   +R +T      +    F +PVD    ++ DY  +I +PMD S++ +K+   
Sbjct: 815  DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKI--- 869

Query: 753  DGTKYKSVREIYSDVRLIFTNAMTYNDE 836
            D  KY +V++   D+ LI +NA+ YN +
Sbjct: 870  DLHKYLTVKDYLRDIDLICSNALEYNPD 897

---

>Q6PL18:ATAD2_HUMAN ATPase family AAA domain-containing protein 2 - Homo sapiens (Human)|
          Length = 1390

 Score = 42.7 bits (99), Expect = 0.004
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = +3

Query: 585  DLMRQLAGIIRQITSH----EWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGK 752
            D  R+L   +R +T      +    F +PVD    ++ DY  +I +PMD S++ +K+   
Sbjct: 984  DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKI--- 1038

Query: 753  DGTKYKSVREIYSDVRLIFTNAMTYNDE 836
            D  KY +V++   D+ LI +NA+ YN +
Sbjct: 1039 DLHKYLTVKDYLRDIDLICSNALEYNPD 1066

---

>Q9JHD2:GCNL2_MOUSE General control of amino acid synthesis protein 5-like 2 - Mus|
            musculus (Mouse)
          Length = 830

 Score = 42.0 bits (97), Expect = 0.007
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
 Frame = +3

Query: 450  VLERRVNEVVGFYDGKKHGSAGRRAIGSSRYAANGARDSNCKGM----------PD-LMR 596
            ++ER+  ++   Y G      G R I     +  G R++  K +          PD L  
Sbjct: 671  LIERKQAQIRKVYPGLSCFKEGVRQIPVE--SVPGIRETGWKPLGKEKGKELKDPDQLYT 728

Query: 597  QLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSV 776
             L  ++ QI SH  + PF++PV     +  DYY++I  P+D  T+  ++     ++Y   
Sbjct: 729  TLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLR----SRYYVT 782

Query: 777  REIY-SDVRLIFTNAMTYN 830
            R+++ +D++ +  N   YN
Sbjct: 783  RKLFVADLQRVIANCREYN 801

---

>Q92830:GCNL2_HUMAN General control of amino acid synthesis protein 5-like 2 - Homo|
            sapiens (Human)
          Length = 837

 Score = 42.0 bits (97), Expect = 0.007
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
 Frame = +3

Query: 450  VLERRVNEVVGFYDGKKHGSAGRRAIGSSRYAANGARDSNCKGM----------PD-LMR 596
            ++ER+  ++   Y G      G R I     +  G R++  K +          PD L  
Sbjct: 678  LIERKQAQIRKVYPGLSCFKEGVRQIPVE--SVPGIRETGWKPLGKEKGKELKDPDQLYT 735

Query: 597  QLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSV 776
             L  ++ QI SH  + PF++PV     +  DYY++I  P+D  T+  ++     ++Y   
Sbjct: 736  TLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLR----SRYYVT 789

Query: 777  REIY-SDVRLIFTNAMTYN 830
            R+++ +D++ +  N   YN
Sbjct: 790  RKLFVADLQRVIANCREYN 808

---

>Q7ZUF2:BRD9_DANRE Bromodomain-containing protein 9 - Danio rerio (Zebrafish)|
           (Brachydanio rerio)
          Length = 631

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = +3

Query: 690 YYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
           Y  II  PMDFST+++K+   +   YK++ E  +D +L+  NAM YN
Sbjct: 203 YSMIIKHPMDFSTMKDKIAANE---YKTITEFKADFKLMCDNAMVYN 246

---

>Q9UTN6:SNF21_SCHPO SNF2-family ATP-dependent chromatin remodeling factor snf21 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1199

 Score = 40.8 bits (94), Expect = 0.016
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +3

Query: 687  DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDE 836
            DYY II  P+    I+  +   +GT YK++  + SD+  +F NA TYN+E
Sbjct: 1103 DYYMIIKSPIALDAIRKHI---NGTFYKTLEAMKSDLMTMFNNARTYNEE 1149

---

>O74964:RSC1_SCHPO Chromatin structure-remodeling complex protein rsc1 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 803

 Score = 39.3 bits (90), Expect = 0.047
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 14/242 (5%)
 Frame = +3

Query: 513  GRRAIG-SSRYAANGAR----DSNCKGMPDLMRQLAGIIRQI------TSHEWSAPFLQP 659
            GR  +G   RY +   +      + K +  L  +   I+RQ+      +  +  APF + 
Sbjct: 181  GRSMVGRDGRYKSEDLKRRKLQPSSKPLSSLEARAKVIMRQVRRYRDGSGRQLFAPFERL 240

Query: 660  VDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDEL 839
             D       +YY+ I +PM    IQ K+      +Y+++ +   D  L+F NA ++ND  
Sbjct: 241  PDP--RMFPEYYQAIEQPMALEVIQKKLSKH---RYETIEQFVDDFNLMFDNAKSFNDPS 295

Query: 840  HDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQMETN---DAPTTDTSPEDAIAQLAKDT 1010
              V+  A                K+++E    + ++      P  D  P  +I     + 
Sbjct: 296  SQVYRDADFLKNYLADVLRLEAGKLDSEFFNYETDSRASPQLPKNDIQPAVSIDGTLLNV 355

Query: 1011 DDELNEINKQLEELRNMVVQRCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQ 1190
             D +  I    +  + +V Q  +   +D+         +L PE      + V  +N  F+
Sbjct: 356  GDWV-LIRNPADSSKPIVSQIYRIWKSDDDINYVTVCWYLRPEQTVHRADAVFYENEVFK 414

Query: 1191 TT 1196
            T+
Sbjct: 415  TS 416

---

>Q8UVR5:BAZ1A_XENLA Bromodomain adjacent to zinc finger domain protein 1A - Xenopus|
           laevis (African clawed frog)
          Length = 627

 Score = 39.3 bits (90), Expect = 0.047
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           ++ ++  H+ S PF++ V     Q+ DY+ +I +P+  + I+ K+   +  +YK   E  
Sbjct: 513 LVVELVRHDDSWPFMRLVSKN--QVPDYFDVIQRPIALNLIREKV---NKCEYKCASEFI 567

Query: 789 SDVRLIFTNAMTYN 830
            DV L+++N   YN
Sbjct: 568 DDVHLMWSNCFEYN 581

---

>Q8LRK9:TAF1A_ARATH Transcription initiation factor TFIID subunit 1-A - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 1919

 Score = 38.9 bits (89), Expect = 0.061
 Identities = 27/86 (31%), Positives = 44/86 (51%)
 Frame = +3

Query: 576  GMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKD 755
            G+ +++ ++   +R     E S  FL+PV     +  DY  I+  PMD STI++K+    
Sbjct: 1802 GLANILERIVDTLR--LKEEVSRLFLKPVSKK--EAPDYLDIVENPMDLSTIRDKVR--- 1854

Query: 756  GTKYKSVREIYSDVRLIFTNAMTYND 833
              +Y++  +   DV  I  NA  YND
Sbjct: 1855 KIEYRNREQFRHDVWQIKYNAHLYND 1880

---

>P22082:SNF2_YEAST Transcription regulatory protein SNF2 - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1703

 Score = 38.9 bits (89), Expect = 0.061
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = +3

Query: 687  DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDE 836
            DYY II  P+ F  I   +E      Y S++E   D  LIF+NA  YN E
Sbjct: 1587 DYYMIIKYPVAFDNINTHIET---LAYNSLKETLQDFHLIFSNARIYNTE 1633

---

>P25439:BRM_DROME Homeotic gene regulator - Drosophila melanogaster (Fruit fly)|
          Length = 1638

 Score = 38.9 bits (89), Expect = 0.061
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +3

Query: 678  QLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHI 854
            +L DYY+II +P+D   I  ++E     KY  + E+  D   +  NA  YN+E   +++
Sbjct: 1459 RLPDYYEIIKRPVDIKKILQRIE---DCKYADLNELEKDFMQLCQNAQIYNEEASLIYL 1514

---

>O94421:SNF22_SCHPO SNF2-family ATP-dependent chromatin remodeling factor snf22 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1680

 Score = 38.5 bits (88), Expect = 0.080
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 687  DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDE 836
            DYY II +P+    I+  ++     +Y  V E+ +D  L+F NA TYN+E
Sbjct: 1555 DYYIIIKRPIALGKIKRNIKND---RYGDVGELIADFMLMFNNAYTYNEE 1601

---

>Q5R5Q2:SRRM1_PONPY Serine/arginine repetitive matrix protein 1 - Pongo pygmaeus|
           (Orangutan)
          Length = 917

 Score = 38.5 bits (88), Expect = 0.080
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 271 PRNRSRSVAATRTR---PAETNP*WCRRTARNRQRPLPPRSTPRCRRWTRSDARSTTLPP 441
           PR+RSRS + +RTR   P+ T P   RR  R+R R   PR  P  RR  R   R  T PP
Sbjct: 276 PRSRSRSKSRSRTRSRSPSHTRP---RRRHRSRSRSYSPRRRPSPRR--RPSPRRRT-PP 329

Query: 442 RPM 450
           R M
Sbjct: 330 RRM 332

---

>Q52KI8:SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 - Mus musculus (Mouse)|
          Length = 946

 Score = 38.5 bits (88), Expect = 0.080
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 271 PRNRSRSVAATRTR---PAETNP*WCRRTARNRQRPLPPRSTPRCRRWTRSDARSTTLPP 441
           PR+RSRS + +RTR   P+ T P   RR  R+R R   PR  P  RR  R   R  T PP
Sbjct: 274 PRSRSRSKSRSRTRSRSPSHTRP---RRRHRSRSRSYSPRRRPSPRR--RPSPRRRT-PP 327

Query: 442 RPM 450
           R M
Sbjct: 328 RRM 330

---

>Q8IYB3:SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 - Homo sapiens (Human)|
          Length = 904

 Score = 38.5 bits (88), Expect = 0.080
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 271 PRNRSRSVAATRTR---PAETNP*WCRRTARNRQRPLPPRSTPRCRRWTRSDARSTTLPP 441
           PR+RSRS + +RTR   P+ T P   RR  R+R R   PR  P  RR  R   R  T PP
Sbjct: 276 PRSRSRSKSRSRTRSRSPSHTRP---RRRHRSRSRSYSPRRRPSPRR--RPSPRRRT-PP 329

Query: 442 RPM 450
           R M
Sbjct: 330 RRM 332

---

>P32597:STH1_YEAST Nuclear protein STH1/NPS1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 1359

 Score = 38.1 bits (87), Expect = 0.10
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +3

Query: 687  DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMA 860
            DY+K+I KPM    I      K+GT YK++ E+   ++ +F NA  YN+E   V++ A
Sbjct: 1289 DYFKVIEKPMAIDIILKNC--KNGT-YKTLEEVRQALQTMFENARFYNEEGSWVYVDA 1343

---

>Q02206:RSC4_YEAST Chromatin structure-remodeling complex protein RSC4 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 625

 Score = 38.1 bits (87), Expect = 0.10
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = +3

Query: 639 SAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNA 818
           S PF++ VD    +L +YY+I+  PM  S ++  +E     +Y  + +   D+ L+F NA
Sbjct: 210 SEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLE---IGQYSKIYDFIIDMLLVFQNA 264

Query: 819 MTYND 833
             +ND
Sbjct: 265 HIFND 269

---

>P54816:TBP7_CAEEL TAT-binding homolog 7 - Caenorhabditis elegans|
          Length = 1291

 Score = 37.4 bits (85), Expect = 0.18
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = +3

Query: 648  FLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTY 827
            F++PVD    + +DYY+II  P+    +Q+ ME  +  +Y    +  +D+ LI TNA+ Y
Sbjct: 939  FVEPVDPD--EAEDYYEIIETPI---CMQDIMEKLNNCEYNHADKFVADLILIQTNALEY 993

Query: 828  N 830
            N
Sbjct: 994  N 994

---

>Q6PUA2:TAF1B_ARATH Transcription initiation factor TFIID subunit 1-B - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 1786

 Score = 37.0 bits (84), Expect = 0.23
 Identities = 26/87 (29%), Positives = 41/87 (47%)
 Frame = +3

Query: 573  KGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGK 752
            KG   L   L  I+  +   E +  +L    V   +  +Y +I+  PMD STI++K+   
Sbjct: 1660 KGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRM 1719

Query: 753  DGTKYKSVREIYSDVRLIFTNAMTYND 833
            +   Y+  ++   DV  I  NA  YND
Sbjct: 1720 E---YRDRQQFRHDVWQIKFNAHLYND 1743

---

>Q99MJ9:DDX50_MOUSE ATP-dependent RNA helicase DDX50 - Mus musculus (Mouse)|
          Length = 734

 Score = 36.6 bits (83), Expect = 0.30
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 248 VCSAPAKLPNL--YLRGTSSLPPSNRAAAGGRRLHERGRAGEEKAGSRGRECGKG 90
           + S PAKLP +  Y  G +S  P  R+   G R    GR+G    G  GR+  +G
Sbjct: 651 ILSVPAKLPEIEEYYDGNTSSNPRQRSGWSGGRSGRSGRSGGRSGGRSGRQSRQG 705

---

>Q9UZC8:RAD50_PYRAB DNA double-strand break repair rad50 ATPase - Pyrococcus abyssi|
          Length = 880

 Score = 36.2 bits (82), Expect = 0.40
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
 Frame = +3

Query: 999  AKDTDDELNEINKQLEELRNMVVQ-RCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQD 1175
            A++  ++L+EI K+LEEL+  V +    K    +  +L A L  L+P +  + LE + ++
Sbjct: 344  AEEIREKLSEIEKRLEELKPYVEELEDAKQVQKQIERLKARLKGLSPGEVIEKLESLEKE 403

Query: 1176 NPDFQTTAEELDLDMDAQSETTLWRLKFFVREALERQANPAAAPGKTDENAKRKRDIYNA 1355
              + +   +E+   +    +    R+K        +   P      T+E+ K   + Y  
Sbjct: 404  RTEIEEAIKEITTRIGQMEQEKNERMKAIEELRKAKGKCPVCGRELTEEHKKELMERYTL 463

Query: 1356 LAKTASKRIRR 1388
              K   + ++R
Sbjct: 464  EIKKIEEELKR 474

---

>Q9PLH5:SYA_CHLMU Alanyl-tRNA synthetase - Chlamydia muridarum|
          Length = 875

 Score = 35.8 bits (81), Expect = 0.52
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 915  ENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKK---M 1085
            EN  R Q  + N+  T   SP+D +    ++  +E  ++ KQL  L N +VQ+  K    
Sbjct: 701  ENIARGQDTDLNEIATIIQSPKDQLLVKLRNVMEEKKDLAKQLANLENQLVQQQVKSLLT 760

Query: 1086 TTDEKRKLGAGLCHLTPED 1142
            + D+  +    + HLT E+
Sbjct: 761  SCDKVNETSYLVYHLTEEE 779

---

>P55201:BRPF1_HUMAN Peregrin - Homo sapiens (Human)|
          Length = 1214

 Score = 35.4 bits (80), Expect = 0.68
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 612 IRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYS 791
           + Q+   +    F +PV +   ++ DY   I KPMDF T++  +E     +Y +  +   
Sbjct: 641 LEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLE---AYRYLNFDDFEE 695

Query: 792 DVRLIFTNAMTYN 830
           D  LI +N + YN
Sbjct: 696 DFNLIVSNCLKYN 708

---

>Q6CN69:ASF1_KLULA Histone chaperone ASF1 - Kluyveromyces lactis (Yeast) (Candida|
            sphaerica)
          Length = 277

 Score = 35.4 bits (80), Expect = 0.68
 Identities = 26/110 (23%), Positives = 49/110 (44%)
 Frame = +3

Query: 906  PKVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKM 1085
            P  + E  +++ E  D    + + EDA   LA++ D +  E  +   E + +     K  
Sbjct: 163  PPEQEEPEEEEEEEEDEDEDEEADEDAEEDLAEEDDVDDGEGEETAPEKKKLKRDPKKST 222

Query: 1086 TTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSE 1235
             +D K   G           S+A  L  +++ + +  AEE+DL+ ++ SE
Sbjct: 223  ASDVKNDEGE----------SQAESLGPEEDEEDEEEAEEIDLEKESDSE 262

---

>Q6QLM7:KIF5A_RAT Kinesin heavy chain isoform 5A - Rattus norvegicus (Rat)|
          Length = 1027

 Score = 35.0 bits (79), Expect = 0.89
 Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
 Frame = +3

Query: 954  APTTDTSPEDAIAQLAKDTDDELNEINKQ---LEELRNMVVQRCKKM--TTDEKRKLGAG 1118
            AP      E+ I +L K  DD+ +EIN+Q   +E+L+  ++ + + +  T  +  K+   
Sbjct: 410  APEERQKYEEEIRRLYKQLDDKDDEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRE 469

Query: 1119 LCHL------TPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREALE 1280
            L HL        E+  + L+ + +   ++   ++E++ +   Q++  +  L   V   L 
Sbjct: 470  LSHLQSENDAAKEEVKEVLQALEELAVNYDQKSQEVE-EKSQQNQLLVDELSQKVATMLS 528

Query: 1281 RQANPAAAPGKTDENAKRKRDIYNALAKTASK 1376
             ++ P      +    KR  ++ N L K  S+
Sbjct: 529  LESEPQRLQEVSGHQRKRIAEVLNGLMKDLSE 560

---

>Q8R332:NUPL1_MOUSE Nucleoporin p58/p45 - Mus musculus (Mouse)|
          Length = 587

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 23/105 (21%), Positives = 46/105 (43%)
 Frame = +3

Query: 966  DTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKRKLGAGLCHLTPEDF 1145
            +T+P D    L +  + +L +  +Q+EEL N +  +             A   H+TP+D 
Sbjct: 327  NTAPADYFRILVQQFEVQLQQYRQQIEELENHLATQ-------------ASNSHITPQDL 373

Query: 1146 SKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREALE 1280
            S A++ + Q         + +  ++    E  L   K F+ +A++
Sbjct: 374  SMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVD 418

---

>Q6C2Q7:NOP12_YARLI Nucleolar protein 12 - Yarrowia lipolytica (Candida lipolytica)|
          Length = 509

 Score = 33.9 bits (76), Expect = 2.0
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMT 1088
            +VE+EE  ++ +  D    +   ED   +  K+ DD+ ++  +++EE    V+++ KK  
Sbjct: 42   EVEDEEEDEEEDEEDEEEDEEDEED---EEEKEEDDDDDDDEEEIEE---PVIKKSKK-- 93

Query: 1089 TDEKRKLGAGLCHLTPEDFSKALELVAQDNPDF-QTTAEELDLD---MDAQSETTL 1244
                +K       L  +  +K  E VA++ P   +T+AEE+ +D    D++ E  L
Sbjct: 94   ---NKKSKEESADLEDQYMAKLAEEVAEEKPMVAETSAEEIKVDEPESDSEDEPEL 146

---

>P12845:MYO2_CAEEL Myosin-2 - Caenorhabditis elegans|
          Length = 1947

 Score = 33.5 bits (75), Expect = 2.6
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +3

Query: 912  VENEERKQQMETNDAPTTDTSPEDAIAQL------AKDTDDELNEINKQLEELRNMVVQR 1073
            V+ EE+K+Q++   A   +    D +AQL       ++ ++ +  +N+Q   L   +   
Sbjct: 880  VQEEEKKRQLQEG-AERLNKETADLLAQLEASKGSTREVEERMTAMNEQKVALEGKLADA 938

Query: 1074 CKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDM 1220
             KK+  +E R +          + +K  +LV  +  D +   +++DL +
Sbjct: 939  SKKLEVEEARAV----------EINKQKKLVEAECADLKKNCQDVDLSL 977

---

>O58687:RAD50_PYRHO DNA double-strand break repair rad50 ATPase - Pyrococcus horikoshii|
          Length = 879

 Score = 33.1 bits (74), Expect = 3.4
 Identities = 35/165 (21%), Positives = 71/165 (43%)
 Frame = +3

Query: 915  ENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTD 1094
            +NE  K ++E + A    +  ED + +L   T DEL+   ++LE+  N  ++   K    
Sbjct: 555  KNESTKLEIEIDKAKKELSEIEDRLLRLGFKTIDELSGRIRELEKFHNKYIE--AKNAEK 612

Query: 1095 EKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREA 1274
            E R +   L     E+  KA E +A+   D +    +L+   + Q +    + +    + 
Sbjct: 613  ELRDILESLKD-EREELDKAFEELAKIETDIEKVTSQLN---ELQRKFDQKKYEEKREKM 668

Query: 1275 LERQANPAAAPGKTDENAKRKRDIYNALAKTASKRIRR*DVSVEV 1409
            ++          K +E  +R+ +I + + K   +R  R    +E+
Sbjct: 669  MKLSMEIKGLETKLEELERRRDEIKSTIEKLKEERKERESAKMEL 713

---

>P70581:NUPL1_RAT Nucleoporin p58/p45 - Rattus norvegicus (Rat)|
          Length = 585

 Score = 33.1 bits (74), Expect = 3.4
 Identities = 23/103 (22%), Positives = 44/103 (42%)
 Frame = +3

Query: 966  DTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKRKLGAGLCHLTPEDF 1145
            +T+P D    L +  + +L +  +Q+EEL N +  +             A   H+TP+D 
Sbjct: 325  NTAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQ-------------ANNSHITPQDL 371

Query: 1146 SKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREA 1274
            S A++ + Q         + +  ++    E  L   K F+ +A
Sbjct: 372  SMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDA 414

---

>P04415:DPOL_BPT4 DNA polymerase - Bacteriophage T4|
          Length = 898

 Score = 33.1 bits (74), Expect = 3.4
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 918  NEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTT 1091
            N E  +++    A +  T PE  + +  K +DD LNE++   E + N +++ C+K  T
Sbjct: 492  NAEAIKKIIMKGAGSCSTKPE--VERYVKFSDDFLNELSNYTESVLNSLIEECEKAAT 547

---

>O33395:UVRB_NEIMB UvrABC system protein B - Neisseria meningitidis serogroup B|
          Length = 675

 Score = 32.7 bits (73), Expect = 4.4
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV----QRC 1076
            K E E   Q +E    PT    P+  I  +A   DD ++EIN ++E+   ++V    +R 
Sbjct: 404  KYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIEKGERVLVTTLTKRM 463

Query: 1077 KKMTTDEKRKLGAGLCHL 1130
             +  TD   +LG  + +L
Sbjct: 464  AEQLTDYYSELGIKVRYL 481

---

>P13533:MYH6_HUMAN Myosin-6 - Homo sapiens (Human)|
          Length = 1939

 Score = 32.7 bits (73), Expect = 4.4
 Identities = 41/226 (18%), Positives = 90/226 (39%), Gaps = 9/226 (3%)
 Frame = +3

Query: 735  NKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKV 914
            N+M  +   + KS++ +  D ++   +A+  ND+L +   +                  V
Sbjct: 1635 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1694

Query: 915  ENEERKQQM------ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            E  ER +++      ET++      S   ++    K  + +L ++  ++EE     VQ C
Sbjct: 1695 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMEADLTQLQSEVEE----AVQEC 1750

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVA---QDNPDFQTTAEELDLDMDAQSETTLW 1247
            +    +EK K       +  E+  K  +  A   +   + + T ++L   +D   +    
Sbjct: 1751 R--NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIA-- 1806

Query: 1248 RLKFFVREALERQANPAAAPGKTDENAKRKRDIYNALAKTASKRIR 1385
             LK   ++  + +A      G+ +   KR  +    + K + +RI+
Sbjct: 1807 -LKGGKKQLQKLEARVRELEGELEAEQKRNAESVKGMRK-SERRIK 1850

---

>Q6CDN5:DBP6_YARLI ATP-dependent RNA helicase DBP6 - Yarrowia lipolytica (Candida|
            lipolytica)
          Length = 607

 Score = 32.7 bits (73), Expect = 4.4
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMT 1088
            KV++EE + + ETN    ++   E+   +   D+ DE  E  K +E +++      + +T
Sbjct: 23   KVKHEEEESKPETNADEHSEVEYEE---ESGDDSMDEAEEAKKPVE-VKDEEESEDENLT 78

Query: 1089 TDEKRKLGAGLCHLTPEDFSKALE 1160
             D+KRK      +L      KALE
Sbjct: 79   ADQKRKKKQEAANLAKRAEEKALE 102

---

>Q5F931:UVRB_NEIG1 UvrABC system protein B - Neisseria gonorrhoeae (strain ATCC 700825 /|
            FA 1090)
          Length = 675

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV----QRC 1076
            K E E   Q +E    PT    P+  I  +A   DD ++EIN ++++   ++V    +R 
Sbjct: 404  KYEEEHAGQVVEQVVRPTGLVDPQTIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRM 463

Query: 1077 KKMTTDEKRKLGAGLCHL 1130
             +  TD   +LG  + +L
Sbjct: 464  AEQLTDYYSELGIKVRYL 481

---

>Q6CJ38:SWR1_KLULA Helicase SWR1 - Kluyveromyces lactis (Yeast) (Candida sphaerica)|
          Length = 1572

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 906  PKVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKK 1082
            P ++   R +Q+  ND+P T    +D     +    +++NEI  QLE L  M   RC +
Sbjct: 1139 PILKEISRLKQLNENDSPVTQPDFQDLNQYYSYAKHNKINEIIGQLEHLNYMNNLRCNR 1197

---

>Q06488:RSC2_YEAST Chromatin structure-remodeling complex protein RSC2 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 889

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
           DYY +I  P+ F+T++ ++       Y   ++  +DV  I  NA TYN
Sbjct: 54  DYYAVIKNPVSFNTLKKRI-----PHYTDAQQFMNDVVQIPWNAKTYN 96

---

>Q93Y39:RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 832

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
 Frame = +3

Query: 906  PKVENE--ERKQQMETNDAPTTDTSPEDAIAQLAKDT----DDELNEINKQLEELRNMVV 1067
            P +E+E  ERKQ  E +D  T +T  E    + A++     DDE +E +++  + +    
Sbjct: 80   PTIESEITERKQSPEDDD-DTNETVDEMIEGEEAEEDGEGRDDEDDEDDEETRKKKEKKA 138

Query: 1068 QRCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSE---- 1235
            +R K+   ++K+K    +        + A+     D  + Q   EE+  +  A S     
Sbjct: 139  KRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPPEFSAWSSMRLH 198

Query: 1236 ----TTLWRLKFFVREALERQA-NPAAAPGK 1313
                 +++RL F     +++   N AA  GK
Sbjct: 199  PLLMKSIYRLDFKEPTKIQKACFNVAAYQGK 229

---

>P12689:REV1_YEAST DNA repair protein REV1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 985

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +3

Query: 1014 DELNEINKQLEELRNMVVQRCKKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQT 1193
            ++LNEINK   ++   +++RCK    +  + +G G C    + FS++  L    N +F  
Sbjct: 652  EKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRC----DSFSRSSRLGIPTN-EFGI 706

Query: 1194 TAEEL 1208
             A E+
Sbjct: 707  IATEM 711

---

>Q91Z83:MYH7_MOUSE Myosin-7 - Mus musculus (Mouse)|
          Length = 1935

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
 Frame = +3

Query: 735  NKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKV 914
            N+M  +   + KS++ +  D ++   +A+  ND+L +   +                  V
Sbjct: 1633 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1692

Query: 915  ENEERKQQM------ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            E  ER +++      ET++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1693 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1748

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVA---QDNPDFQTTAEELDLDMDAQSETTL 1244
            +    +EK K       +  E+  K  +  A   +   + + T ++L   +D   +  L
Sbjct: 1749 R--NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

---

>P13540:MYH7_MESAU Myosin-7 - Mesocricetus auratus (Golden hamster)|
          Length = 1934

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
 Frame = +3

Query: 735  NKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKV 914
            N+M  +   + KS++ +  D ++   +A+  ND+L +   +                  V
Sbjct: 1632 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1691

Query: 915  ENEERKQQM------ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            E  ER +++      ET++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1692 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1747

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVA---QDNPDFQTTAEELDLDMDAQSETTL 1244
            +    +EK K       +  E+  K  +  A   +   + + T ++L   +D   +  L
Sbjct: 1748 R--NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1804

---

>P12883:MYH7_HUMAN Myosin-7 - Homo sapiens (Human)|
          Length = 1935

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
 Frame = +3

Query: 735  NKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKV 914
            N+M  +   + KS++ +  D ++   +A+  ND+L +   +                  V
Sbjct: 1633 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1692

Query: 915  ENEERKQQM------ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            E  ER +++      ET++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1693 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1748

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVA---QDNPDFQTTAEELDLDMDAQSETTL 1244
            +    +EK K       +  E+  K  +  A   +   + + T ++L   +D   +  L
Sbjct: 1749 R--NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

---

>Q20318:LIN49_CAEEL Protein lin-49 - Caenorhabditis elegans|
          Length = 1042

 Score = 32.3 bits (72), Expect = 5.7
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = +3

Query: 609 IIRQITSHEWSAPFLQPVDVVGLQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 788
           +I  + + +    F +PV++VG     Y  II  P+    +++  E     KY +V  + 
Sbjct: 521 VIEALKTIDAGKVFAEPVELVG-----YTDIIENPI---CLKDMSEKAASGKYSTVAALS 572

Query: 789 SDVRLIFTNAMTYN 830
           +DV+L+ +N  T+N
Sbjct: 573 ADVQLMLSNCATFN 586

---

>P53236:RSC1_YEAST Chromatin structure-remodeling complex protein RSC1 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 928

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 687 DYYKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFTNAMTYN 830
           DYY II  P+  +T++ ++       Y S ++  +D   I  NAMTYN
Sbjct: 46  DYYIIIRNPISLNTLKKRLP-----HYTSPQDFVNDFAQIPWNAMTYN 88

---

>Q9BVL2:NUPL1_HUMAN Nucleoporin p58/p45 - Homo sapiens (Human)|
          Length = 599

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 22/103 (21%), Positives = 44/103 (42%)
 Frame = +3

Query: 972  SPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKRKLGAGLCHLTPEDFSK 1151
            +P D    L +  + +L +  +Q+EEL N +  +             A   H+TP+D S 
Sbjct: 341  APADYFRILVQQFEVQLQQYRQQIEELENHLATQ-------------ANNSHITPQDLSM 387

Query: 1152 ALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREALE 1280
            A++ + Q         + +  ++    E  L   K F+ +A++
Sbjct: 388  AMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVD 430

---

>P02564:MYH7_RAT Myosin-7 - Rattus norvegicus (Rat)|
          Length = 1935

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
 Frame = +3

Query: 735  NKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKV 914
            N+M  +   + KS++ +  D ++   +A+  ND+L +   +                  V
Sbjct: 1633 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1692

Query: 915  ENEERKQQM------ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            E  ER +++      ET++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1693 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1748

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVA---QDNPDFQTTAEELDLDMDAQSETTL 1244
            +    +EK K       +  E+  K  +  A   +   + + T ++L   +D   +  L
Sbjct: 1749 R--NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKNNMEQTIKDLQHRLDEAEQIAL 1805

---

>Q8MJU9:MYH7_HORSE Myosin-7 - Equus caballus (Horse)|
          Length = 1935

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
 Frame = +3

Query: 735  NKMEGKDGTKYKSVREIYSDVRLIFTNAMTYNDELHDVHIMAXXXXXXXXXXXXXXXPKV 914
            N+M  +   + KS++ +  D ++   +A+  ND+L +   +                  V
Sbjct: 1633 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1692

Query: 915  ENEERKQQM------ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            E  ER +++      ET++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1693 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1748

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVA---QDNPDFQTTAEELDLDMDAQSETTL 1244
            +    +EK K       +  E+  K  +  A   +   + + T ++L   +D   +  L
Sbjct: 1749 R--DAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805

---

>P10587:MYH11_CHICK Myosin-11 - Gallus gallus (Chicken)|
          Length = 1979

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 32/164 (19%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
 Frame = +3

Query: 912  VENEERKQQMETNDAPTTDTSPEDA-----IAQLAKDTDDELNEINKQLEELRNMVVQRC 1076
            +E EE  +++ + ++  T    E       IAQL ++ D+E + I    + +R   VQ+ 
Sbjct: 1714 LEKEEMAEELASANSGRTSLQDEKRRLEARIAQLEEELDEEHSNIETMSDRMRK-AVQQA 1772

Query: 1077 KKMTTDEKRKLGAGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLK 1256
            +++  +   +        T +    A + + + N + ++  +E++  + ++ ++T+  L+
Sbjct: 1773 EQLNNELATE------RATAQKNENARQQLERQNKELRSKLQEMEGAVKSKFKSTIAALE 1826

Query: 1257 FFV---REALERQANPAAAPGKTDENAKRKRDIYNALAKTASKR 1379
              +    E LE++A    A  KT     +K  + +AL +   +R
Sbjct: 1827 AKIASLEEQLEQEAREKQAAAKTLRQKDKK--LKDALLQVEDER 1868

---

>Q96LB3:IFT74_HUMAN Intraflagellar transport 74 homolog - Homo sapiens (Human)|
          Length = 600

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 55/267 (20%), Positives = 107/267 (40%), Gaps = 28/267 (10%)
 Frame = +3

Query: 378  TEHPAVSEVDSFRRQVDDLASKTDVLERRV------NEVV----GFYDGKKHGS---AGR 518
            T    + E+D+ ++Q+D    K + LE  +       E V      Y+ + H     A  
Sbjct: 236  TNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMIAED 295

Query: 519  RAIGSSRYAANGARDSNCKGMPDLMRQLAGIIRQIT-SHEWSAPFLQPVDVVGLQLDDYY 695
            ++IGS        R+   K + D  +++A + RQ+T + E    F++ +  + + L+++ 
Sbjct: 296  KSIGSPM----EEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDLEEH- 350

Query: 696  KIITKPMDFSTIQNKMEGKDGTKYKSV--REIYSDVRLIFTNAMTYNDELH-----DVHI 854
                            +G+   KYK +  RE + D   I T   T N EL      + +I
Sbjct: 351  ----------------QGEMNQKYKELKKREEHMDT-FIETFEETKNQELKRKAQIEANI 393

Query: 855  MAXXXXXXXXXXXXXXXPKVENEERKQQMETNDAPTTDTSPEDAIAQ-LAKDTD------ 1013
            +A                 + N+E K   +  +  +T+     + AQ L  D        
Sbjct: 394  VALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDL 453

Query: 1014 DELNEINKQLEELRNMVVQRCKKMTTD 1094
             ++  +  ++ E ++ +  + K+MTTD
Sbjct: 454  QKMELLESKMTEEQHSLKSKIKQMTTD 480

---

>O74225:HSP88_NEUCR Heat shock protein Hsp88 - Neurospora crassa|
          Length = 707

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
 Frame = +3

Query: 909  KVENEERKQQMETNDA-PTTDTSPEDAIAQ----------LAKDTDDELNEINKQLEELR 1055
            KV+ + RK ++    A P+ D + ++A  +          L  DT+++ NE+   + +LR
Sbjct: 527  KVKKQVRKGELPVVSATPSLDPAAKNAAIEREQAMIMEDKLVADTEEKKNELETYIYDLR 586

Query: 1056 NMVVQRCKKMTT-DEKRKLGAGLCHLTP------EDFSKAL------ELVAQDNPDFQTT 1196
            N +  +   + + +EK K+ A L  +        +D +KA+      E+ A   P  Q  
Sbjct: 587  NKLDDQYADLASEEEKEKIRAKLMEVEDWLYDEGDDATKAVYVAKIEEIRALAGPVVQRY 646

Query: 1197 AEELDLDMDAQSETTLWRLKFFVREALERQANPAAAPGKTDENAKRKRDIYNALAKTASK 1376
             ++++ +                R+AL+ +     A  K +E A++ ++     A+  +K
Sbjct: 647  FDKVEAE----------------RQALQEKLEAEKAAKKAEEEARKAKEAAEKAAQEGAK 690

---

>P48608:DIA_DROME Protein diaphanous - Drosophila melanogaster (Fruit fly)|
          Length = 1091

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 10/229 (4%)
 Frame = +3

Query: 447  DVLERRVNEVVGFYDGKKHGSAGRRAIGSSRYAANGARDSNCKGMP-DLMRQLAGIIRQI 623
            D++E++  + + FYD   H +   R    +   A    +S  K +  DL           
Sbjct: 855  DLVEKKFPDALNFYDDLSHVNKASRVNMDAIQKAMRQMNSAVKNLETDLQNNKVPQCDDD 914

Query: 624  TSHEWSAPFL----QPVDVVG---LQLDDYYKIITKPMDFSTIQNKMEGKDGTKYKSVRE 782
               E    F     Q VDV+G   LQ++  YK +++   F          D +KY ++ E
Sbjct: 915  KFSEVMGKFAEECRQQVDVLGKMQLQMEKLYKDLSEYYAF----------DPSKY-TMEE 963

Query: 783  IYSDVRLIFTNAM--TYNDELHDVHIMAXXXXXXXXXXXXXXXPKVENEERKQQMETNDA 956
             ++D++  F +A    +ND +  V                    + E ++RK+ +   DA
Sbjct: 964  FFADIKT-FKDAFQAAHNDNVR-VREELEKKRRLQEAREQSAREQQERQQRKKAVVDMDA 1021

Query: 957  PTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKMTTDEKR 1103
            P T     D++ + A  T     + N+Q    R    +R  +++    R
Sbjct: 1022 PQTQEGVMDSLLE-ALQTGSAFGQRNRQARRQRPAGAERRAQLSRSRSR 1069

---

>Q6CFR0:ATG11_YARLI Autophagy-related protein 11 - Yarrowia lipolytica (Candida|
            lipolytica)
          Length = 924

 Score = 32.0 bits (71), Expect = 7.5
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
 Frame = +3

Query: 978  EDAIAQLAKDTDDELNEINKQLEELRNMVVQRCKKM--TTDEKRKLGAGLCHLTPEDFSK 1151
            E A  +  K  ++ L       E L++ V Q  + +  T +EK  L A L  +   DFS+
Sbjct: 562  EKAEEEARKAEEERLARDKAAAEALQSKVDQLSQSLLHTENEKNDLMANLASME-SDFSR 620

Query: 1152 ALELVAQDNPDFQTTAEELDLDMDAQSETTLWRLKFFVREALERQ----ANPAAAPGKTD 1319
                + Q+  + +   EEL+  ++  +ET++ R +   +E  E +    A   A     D
Sbjct: 621  ERRCLVQEISELKLRVEELEEQVETAAETSIERHQRADQETEELEQRLKAMTLAQNTVDD 680

Query: 1320 ENAKRK 1337
            EN++ K
Sbjct: 681  ENSRLK 686

---

>P56996:UVRB_NEIMA UvrABC system protein B - Neisseria meningitidis serogroup A|
          Length = 675

 Score = 31.6 bits (70), Expect = 9.8
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV----QRC 1076
            K E E   Q +E    PT    P+  I  +A   DD ++EIN ++++   ++V    +R 
Sbjct: 404  KYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRM 463

Query: 1077 KKMTTDEKRKLGAGLCHL 1130
             +  TD   +LG  + +L
Sbjct: 464  AEQLTDYYSELGIKVRYL 481

---

>Q50939:UVRB_NEIGO UvrABC system protein B - Neisseria gonorrhoeae|
          Length = 675

 Score = 31.6 bits (70), Expect = 9.8
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 909  KVENEERKQQMETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEELRNMVV----QRC 1076
            K E E   Q +E    PT    P+  I  +A   DD ++EIN ++++   ++V    +R 
Sbjct: 404  KYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRM 463

Query: 1077 KKMTTDEKRKLGAGLCHL 1130
             +  TD   +LG  + +L
Sbjct: 464  AEQLTDYYSELGIKVRYL 481

---

>O74331:RLP1_SCHPO DNA-repair protein rlp1 - Schizosaccharomyces pombe (Fission yeast)|
          Length = 363

 Score = 31.6 bits (70), Expect = 9.8
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +3

Query: 942  ETNDAPTTDTSPEDAIAQLAKDTDDELNEINKQLEEL---RNMVVQRCKKMTTDEKRKLG 1112
            + N     D S       L     +E +E N+++E+L    +  V  C     D +RK+ 
Sbjct: 135  DINSNSVNDVSLSSGETMLQFPEHEEQHECNREMEQLYESASSTVYPCS-FWEDAERKID 193

Query: 1113 AGLCHLTPEDFSKALELVAQDNPDFQTTAEELDLDM 1220
            A    L P +FS  +E + Q   D     +E  + M
Sbjct: 194  AQCAILWPMEFSGVVESIPQSTKDLLRIWKEAKIQM 229

---

>P26849:NU5M_MARPO NADH-ubiquinone oxidoreductase chain 5 - Marchantia polymorpha|
           (Liverwort)
          Length = 669

 Score = 31.6 bits (70), Expect = 9.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -3

Query: 841 WSSSLYVIALVKINRTSEYISRTLLYLVPSFPSILFWMVEKSIGFVI 701
           W++SL+++   +I   SE+ + T++ L+P   S L   V  S+ FV+
Sbjct: 496 WANSLFILPKNEILAESEFATPTIIKLIPILFSTLGSFVAYSVNFVV 542

---

>P79777:BRAC_CHICK Brachyury protein - Gallus gallus (Chicken)|
          Length = 433

 Score = 31.6 bits (70), Expect = 9.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 515 AQGHR*QQVCGEWCKGQQLQRDARPHAPACRYHSPD 622
           A GHR + V GEW  G +      P AP+C Y  PD
Sbjct: 95  ADGHRWKYVNGEWVPGGK----PEPQAPSCVYIHPD 126

---

>Q13243:SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 - Homo sapiens (Human)|
          Length = 272

 Score = 31.6 bits (70), Expect = 9.8
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +1

Query: 277 NRSRSVAATRTRPAETNP*WCRRTARNRQRPLPPRSTPRCRRWTRSDARSTTLPPRP 447
           +RSRS + +RTR +  +    R  +R+R R    RS  R R  +RS +RS +  P P
Sbjct: 184 SRSRSRSRSRTRSSSRS----RSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVP 236


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 268,226,905
Number of extensions: 5854633
Number of successful extensions: 20403
Number of sequences better than 10.0: 139
Number of HSP's gapped: 20262
Number of HSP's successfully gapped: 171
Length of query: 531
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 413
Effective length of database: 68,319,629
Effective search space: 28216006777
Effective search space used: 28216006777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---