ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf66p01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os07g33850:12007.t03062:unspliced-genomic septum-promoti... 33 1.5
2LOC_Os01g51490:12001.t04581:unspliced-genomic hypothetical p... 25 3.0
3LOC_Os07g48450:12007.t04477:unspliced-genomic NAC domain-con... 31 3.9
4LOC_Os10g01100:12010.t00010:unspliced-genomic receptor-like ... 31 5.4
5LOC_Os06g25500:12006.t02357:unspliced-genomic expressed protein 30 7.4

>LOC_Os07g33850:12007.t03062:unspliced-genomic septum-promoting GTP-binding protein 1, putative, expressed|
          Length = 3729
 Score = 32.7 bits (65), Expect = 1.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2 / -1

                                  
Query: 433  FFFFFISEYCKINSCIKFSHNH 368
            FFFFF+S  C   S +  SH H
Sbjct: 3519 FFFFFLSPICTCKSSVLLSHGH 3454



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>LOC_Os01g51490:12001.t04581:unspliced-genomic hypothetical protein|
          Length = 1095

 Score = 24.9 bits (48), Expect(2) = 3.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3 / +3

                             
Query: 168 RRLGAGNASSLHQAARHR 221
           RR G G    LH+  RHR
Sbjct: 753 RRRGGGELRGLHRRVRHR 806



 Score = 24.0 bits (46), Expect(2) = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2 / +2

                                
Query: 2   NNLRRSGSSTHLRRRLRRCEP 64
           + LR S + T  RRRLRR  P
Sbjct: 632 SRLRPSAAWTTRRRRLRRSSP 694



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>LOC_Os07g48450:12007.t04477:unspliced-genomic NAC domain-containing protein 18, putative, expressed|
          Length = 2236

 Score = 31.3 bits (62), Expect = 3.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2 / +3

                              
Query: 277 LPQP*QQTHQESLDHAVIP 221
           LP+P  Q HQ+ LDHA +P
Sbjct: 546 LPRPPSQGHQDQLDHARVP 602



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>LOC_Os10g01100:12010.t00010:unspliced-genomic receptor-like protein kinase, putative, expressed|
          Length = 2947

 Score = 30.9 bits (61), Expect = 5.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +2 / -3

                                   
Query: 11  RRSGSSTHLRRRLRRCEPESEADS 82
           RR  SS+ +RRR RR EP SEA S
Sbjct: 914 RRLPSSSRVRRRRRRVEPWSEAMS 843



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>LOC_Os06g25500:12006.t02357:unspliced-genomic expressed protein|
          Length = 16279

 Score = 30.4 bits (60), Expect = 7.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3 / +2

                                                  
Query: 330  HNQTSIKQLNLTKRRLNNFHSHNSKHIRNH*IMPSSLG 217
            H+  S + LN  K+  NN   H+ +HI      P SLG
Sbjct: 3521 HHNNSKELLNRVKKDFNNIGPHHCEHILPKQKAPKSLG 3634


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 123,464,728
Number of extensions: 1490062
Number of successful extensions: 5291
Number of sequences better than 10.0: 5
Length of query: 145
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 98
Effective length of database: 52,968,820
Effective search space: 5190944360
Effective search space used: 5190944360
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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