ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf70b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os08g37580:12008.t03495:unspliced-genomic homeobox-leuci... 31 1.3
2LOC_Os06g12820:12006.t01158:unspliced-genomic expressed protein 31 1.9
3LOC_Os12g03340:12012.t00227:unspliced-genomic expressed protein 30 2.6
4LOC_Os11g07540:12011.t00645:unspliced-genomic hypothetical p... 29 4.8
5LOC_Os01g09560:12001.t00834:unspliced-genomic mitochondrial-... 29 6.5
6LOC_Os09g29460:12009.t02624:unspliced-genomic homeobox-leuci... 29 8.9
7LOC_Os01g37580:12001.t03300:unspliced-genomic retrotransposo... 29 8.9
8LOC_Os01g37120:12001.t03260:unspliced-genomic nucleotide bin... 29 8.9
9LOC_Os01g53020:12001.t04727:unspliced-genomic electron trans... 29 9.1

>LOC_Os08g37580:12008.t03495:unspliced-genomic homeobox-leucine zipper protein ATHB-6, putative, expressed|
          Length = 2069
 Score = 31.3 bits (62), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3 / +1

                                
Query: 78   KQGLF*NFCKSRFYPVLFCQ 137
            ++G   NFCK + Y VLFCQ
Sbjct: 1504 RRGFSANFCKMKLYLVLFCQ 1563



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>LOC_Os06g12820:12006.t01158:unspliced-genomic expressed protein|
          Length = 2781

 Score = 30.9 bits (61), Expect = 1.9
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1 / +3

                                           
Query: 64   KISEESRGFSEIFVNLVFIPSFSVKPSPSLG 156
            +IS E  GF +IFVNLV   S SVK S + G
Sbjct: 1467 QISPEIFGFLQIFVNLVKFYSNSVKFSNNFG 1559



 Score = 28.6 bits (56), Expect = 8.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3 / -3

                                      
Query: 143  EGLTEKDGIKTRFTKISEKPLLSSLI 66
            E LTE +   TRFTKI +KP +S  I
Sbjct: 1546 ENLTEFE*NLTRFTKICKKPKISGEI 1469



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>LOC_Os12g03340:12012.t00227:unspliced-genomic expressed protein|
          Length = 8301

 Score = 30.4 bits (60), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2 / +3

                                          
Query: 144  RGFDRKGRDKNEIYKNFRKAPAFFTNLLFP 55
            +   ++ R+K + YK   K   FFTN+LFP
Sbjct: 2886 KDLQKEEREKIQNYKGMIKYNNFFTNILFP 2975



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>LOC_Os11g07540:12011.t00645:unspliced-genomic hypothetical protein|
          Length = 1792

 Score = 29.5 bits (58), Expect = 4.8
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +1 / -3

                                    
Query: 67   ISEESRGFSEIFVNLVFIPSFSVK 138
            IS    GFS IFVNLV I S SVK
Sbjct: 1448 ISTRILGFSHIFVNLVKI*SNSVK 1377



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>LOC_Os01g09560:12001.t00834:unspliced-genomic mitochondrial-processing peptidase alpha subunit, mitochondrial|
           precursor, putative, expressed
          Length = 5361

 Score = 29.0 bits (57), Expect = 6.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3 / -2

                                      
Query: 152 SDGEGLTEKDGIKTRFTKISEKPLLSS 72
           S+ EG+T  + IKT+   ISEK + SS
Sbjct: 608 SNNEGMTNPEPIKTQHNPISEKCMPSS 528



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>LOC_Os09g29460:12009.t02624:unspliced-genomic homeobox-leucine zipper protein ATHB-6, putative, expressed|
          Length = 1723

 Score = 28.6 bits (56), Expect = 8.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3 / -1

                               
Query: 107  FTKISEKPLLSSLIFYSPR 51
            F KI++K LLS  I YSPR
Sbjct: 1501 FYKIADKTLLSCRILYSPR 1445



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>LOC_Os01g37580:12001.t03300:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 12132

 Score = 28.6 bits (56), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3 / +1

                                 
Query: 98    ISEKPLLSSLIFYSPREVSS 39
             +SEKP  SS IF+SP  +S+
Sbjct: 10840 VSEKPSFSSFIFFSPFFIST 10899



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>LOC_Os01g37120:12001.t03260:unspliced-genomic nucleotide binding protein, putative, expressed|
          Length = 5221

 Score = 28.6 bits (56), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3 / +1

                                  
Query: 122  GIKTRFTKISEKPLLSSLIFYS 57
            G  TRF  +   PL+SS++FYS
Sbjct: 2638 GFCTRFAAMFNYPLISSVLFYS 2703



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>LOC_Os01g53020:12001.t04727:unspliced-genomic electron transporter/ heat shock protein binding protein, putative,|
            expressed
          Length = 2613

 Score = 28.6 bits (56), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2 / +2

                                
Query: 159  AA*RWRGFDRKGRDKNEIYK 100
            AA RWR + RKG DK   +K
Sbjct: 2234 AARRWREYSRKGADKPPTFK 2293


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 51,322,674
Number of extensions: 424505
Number of successful extensions: 1639
Number of sequences better than 10.0: 9
Length of query: 78
Length of database: 55,613,886
Length adjustment: 44
Effective length of query: 34
Effective length of database: 53,137,654
Effective search space: 1806680236
Effective search space used: 1806680236
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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