| Clone Name | FLbaf70b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ353855.1| Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-1 mRNA, complete cds Length = 963 Score = 228 bits (115), Expect = 7e-57 Identities = 154/166 (92%), Gaps = 7/166 (4%) Strand = Plus / Plus Query: 29 actcggtgggagacgac----acctcgcgcggggaataaaagattagtgaagaaagcagg 84 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 768 actcggtgggagacgacggacacctcgcgctgggaataaaagattagtgaagaaagcagg 827 Query: 85 ggcttttctgaaatttttgtaaatctcgtttttatcccgtccttttctgtcaaaccctcg 144 |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 828 ggcttttctgaaatttttgtaaatctcgtttttatctagtcctttcctgtcaaaccctcg 887 Query: 145 ccatcgctaggcagc---catcagcaatagtactactactactact 187 || |||||||||||| |||||||||||||||||||||||||||| Sbjct: 888 ccgtcgctaggcagccagcatcagcaatagtactactactactact 933
>ref|XM_711444.1| Candida albicans SC5314 hypothetical protein (CaO19_1229), mRNA Length = 774 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 |||||||||||||||||||||||| Sbjct: 507 agcaatagtactactactactact 484
>ref|NW_001091927.1| Theileria annulata strain Ankara clone C9 Length = 1979170 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Plus Query: 164 agcaatagtactactactactac 186 ||||||||||||||||||||||| Sbjct: 1132901 agcaatagtactactactactac 1132923
>ref|XM_947200.1| Theileria annulata strain Ankara signal recognition particle receptor subunit alpha (TA13100) partial mRNA Length = 1644 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Plus Query: 164 agcaatagtactactactactac 186 ||||||||||||||||||||||| Sbjct: 433 agcaatagtactactactactac 455
>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18, complete sequence Length = 188895 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 caatagtactactactactact 187 |||||||||||||||||||||| Sbjct: 16911 caatagtactactactactact 16932
>emb|CR376733.10| Zebrafish DNA sequence from clone DKEY-189O24 in linkage group 24, complete sequence Length = 178501 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 8938 aatagtactactactactact 8918
>emb|CT573118.11| Zebrafish DNA sequence from clone DKEY-193J22 in linkage group 4, complete sequence Length = 48919 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 41156 aatagtactactactactact 41136
>emb|CT025717.13| Zebrafish DNA sequence from clone CH211-33H21 in linkage group 4, complete sequence Length = 166825 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 129657 aatagtactactactactact 129637
>emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 in linkage group 7, complete sequence Length = 159979 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 28359 aatagtactactactactact 28339
>emb|CR812466.18| Zebrafish DNA sequence from clone CH211-269M1 in linkage group 1, complete sequence Length = 138505 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 51949 aatagtactactactactact 51929 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 58863 cagcaatactactactactactact 58839
>ref|NM_106434.1| Arabidopsis thaliana ARF17; transcription factor (ARF17) mRNA, complete cds Length = 2076 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 1916 aatagtactactactactact 1896
>ref|XM_632562.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0218862) mRNA, complete cds Length = 2088 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 1437 aatagtactactactactact 1417
>gb|AC118700.10| Mus musculus chromosome 3, clone RP23-24O21, complete sequence Length = 220310 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 162640 aatagtactactactactact 162660
>gb|AY316745.1| Nicotiana tabacum cultivar Wisconsin 38 LTP12 gene, promoter region and 5' UTR Length = 727 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 atcagcaatagtactactact 181 ||||||||||||||||||||| Sbjct: 680 atcagcaatagtactactact 700
>gb|AY056184.1| Arabidopsis thaliana auxin response factor ARF17 (At1g77850) mRNA, complete cds Length = 2092 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 1916 aatagtactactactactact 1896
>gb|AC073437.50| Mus musculus strain 129/Sv chromosome 2 clone ct7-531j6, complete sequence Length = 176056 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 136243 cagcaatactactactactactact 136267
>emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in linkage group 17, complete sequence Length = 67753 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 46414 aatagtactactactactact 46434
>emb|CR936412.13| Zebrafish DNA sequence from clone DKEY-181M21 in linkage group 18, complete sequence Length = 151872 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 13947 cagcaatactactactactactact 13971
>emb|CR293531.11| Zebrafish DNA sequence from clone DKEY-125H23 in linkage group 21, complete sequence Length = 116173 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 12462 aatagtactactactactact 12442
>emb|CR936410.12| Zebrafish DNA sequence from clone CH73-45K13 in linkage group 6, complete sequence Length = 123203 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 69437 cagcaatactactactactactact 69413
>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19, complete sequence Length = 191582 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 104318 aatagtactactactactact 104298
>emb|CR352297.14| Zebrafish DNA sequence from clone CH211-165L15 in linkage group 8, complete sequence Length = 159143 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 14750 aatagtactactactactact 14770
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3, complete sequence Length = 241961 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 92676 aatagtactactactactact 92656
>emb|CR450818.8| Zebrafish DNA sequence from clone DKEY-172M14 in linkage group 5, complete sequence Length = 150883 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 97080 aatagtactactactactact 97100
>emb|BX537169.4| Zebrafish DNA sequence from clone DKEYP-60G2 in linkage group 4, complete sequence Length = 110319 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 8788 aatagtactactactactact 8808
>gb|AC092660.2| Homo sapiens BAC clone RP11-502A5 from 2, complete sequence Length = 154704 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 98024 aatagtactactactactact 98004
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence Length = 110565 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 18524 aatagtactactactactact 18504
>gb|AY190959.1| Drosophila willistoni clone DWIF01_5_H09 (D1414) genomic sequence Length = 38059 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 32177 cagcaatactactactactactact 32201
>emb|BX005222.8| Zebrafish DNA sequence from clone DKEY-68M7 in linkage group 12, complete sequence Length = 66255 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 36080 cagcaatactactactactactact 36056
>gb|AF531366.1| Gossypium barbadense fiber lipid transfer protein mRNA, complete cds Length = 621 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 atcagcaatagtactactact 181 ||||||||||||||||||||| Sbjct: 8 atcagcaatagtactactact 28
>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence Length = 164682 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 105364 aatagtactactactactact 105344
>emb|BX469898.9| Zebrafish DNA sequence from clone DKEY-180H12 in linkage group 18, complete sequence Length = 185729 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 171202 cagcaatactactactactactact 171178
>ref|XM_318706.2| Anopheles gambiae str. PEST ENSANGP00000022239 (ENSANGG00000019750), partial mRNA Length = 839 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 697 aatagtactactactactact 677
>gb|AF195864.1|AF195864 Gossypium hirsutum lipid transfer protein precursor (FSltp2) gene, complete cds Length = 900 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 atcagcaatagtactactact 181 ||||||||||||||||||||| Sbjct: 110 atcagcaatagtactactact 130
>gb|AY785452.1| Arabidopsis thaliana At1g77850 gene, 3' UTR Length = 1000 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 66 aatagtactactactactact 46
>emb|BX629359.1|CNS09SBT Tetraodon nigroviridis BAC sequence Length = 139693 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 92881 cagcaatactactactactactact 92905
>emb|AL732467.8| Mouse DNA sequence from clone RP23-147L14 on chromosome 2, complete sequence Length = 229048 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 14503 cagcaatactactactactactact 14527
>emb|BX005067.6| Zebrafish DNA sequence from clone CH211-182K2 in linkage group 24, complete sequence Length = 162692 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 47399 aatagtactactactactact 47379
>emb|AL935319.8| Zebrafish DNA sequence from clone DKEY-56L2 in linkage group 18, complete sequence Length = 106806 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactact 187 ||||||||||||||||||||| Sbjct: 15459 aatagtactactactactact 15439
>gb|AF044204.1|AF044204 Gossypium hirsutum cultivar Siokra 1-2 lipid transfer protein precursor (LTP) mRNA, complete cds Length = 631 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 atcagcaatagtactactact 181 ||||||||||||||||||||| Sbjct: 8 atcagcaatagtactactact 28
>emb|CT010516.6| Mouse DNA sequence from clone RP23-276H24 on chromosome 14, complete sequence Length = 194815 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 gggaataaaagattagtgaagaaag 80 |||||||||||||||||| |||||| Sbjct: 35629 gggaataaaagattagtgtagaaag 35605
>emb|AL807816.7| Mouse DNA sequence from clone RP23-13H12 on chromosome X, complete sequence Length = 193219 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactact 187 |||||||| |||||||||||||||| Sbjct: 38351 cagcaatactactactactactact 38375
>emb|CR769768.24| Zebrafish DNA sequence from clone DKEY-222H21 in linkage group 1, complete sequence Length = 257616 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 37297 agcaatactactactactactact 37320
>ref|NM_001051968.1| Oryza sativa (japonica cultivar-group) Os01g0954500 (Os01g0954500) mRNA, complete cds Length = 1780 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 43 atagtactactactactact 24
>ref|XM_001122522.1| PREDICTED: Apis mellifera similar to CG8032-PA (LOC726801), mRNA Length = 1532 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tttctgaaatttttgtaaat 108 |||||||||||||||||||| Sbjct: 1063 tttctgaaatttttgtaaat 1044
>gb|AC186168.1| Ornithorhynchus anatinus chromosome UNK clone OABb-35C10, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 1942 atagtactactactactact 1923
>emb|CT030034.8| Zebrafish DNA sequence from clone CH73-366C23 in linkage group 7, complete sequence Length = 106544 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 42640 agcaatactactactactactact 42663
>emb|CR384055.4| Zebrafish DNA sequence from clone CH211-236C15 in linkage group 25, complete sequence Length = 90680 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 35284 agcaatactactactactactact 35261
>gb|AY022966.1| Oryza sativa microsatellite MRG5291 containing (CTG)X10, closest to marker C563, genomic sequence Length = 230 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 77 atagtactactactactact 96
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgccatcgctaggcagccatcagc 166 |||| ||||||||||||||||||| Sbjct: 44496 cgccttcgctaggcagccatcagc 44519
>gb|AC132337.3| Mus musculus BAC clone RP24-153D21 from chromosome 6, complete sequence Length = 146358 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 5619 atagtactactactactact 5638
>gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, complete sequence Length = 209459 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 189653 agcaatactactactactactact 189676
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10, complete sequence Length = 102275 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgccatcgctaggcagccatcagc 166 |||| ||||||||||||||||||| Sbjct: 43336 cgccttcgctaggcagccatcagc 43359
>gb|AC119909.12| Mus musculus chromosome 8, clone RP24-241I4, complete sequence Length = 150332 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 80155 agcaatactactactactactact 80132
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03, complete sequence Length = 82352 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 43936 atagtactactactactact 43955
>emb|Z92807.1|CEK11D9 Caenorhabditis elegans Cosmid K11D9, complete sequence Length = 32205 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttttctgaaatttttgtaaa 107 |||||||||||||||||||| Sbjct: 708 ttttctgaaatttttgtaaa 727
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgccatcgctaggcagccatcagc 166 |||| ||||||||||||||||||| Sbjct: 5357822 cgccttcgctaggcagccatcagc 5357845
>gb|AC158352.5| Mus musculus chromosome 8, clone RP24-325B16, complete sequence Length = 166845 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 1817 agcaatactactactactactact 1794
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 6780022 atagtactactactactact 6780003
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 42031652 atagtactactactactact 42031671
>emb|Z84470.1|HS411B6 Human DNA sequence from clone RP3-411B6 on chromosome X, complete sequence Length = 149526 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cagcaatagtactactactactac 186 |||||| ||||||||||||||||| Sbjct: 131280 cagcaacagtactactactactac 131303
>emb|AL591027.12| Human DNA sequence from clone RP11-474J16 on chromosome 6 Contains a CpG island, complete sequence Length = 111635 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 |||||||||||||||| ||||||| Sbjct: 62432 agcaatagtactactattactact 62455
>emb|AL161627.13| Human DNA sequence from clone RP11-287A8 on chromosome 9 Contains the 3' end of the gene for CDw92 antigen (CDW92) (CTL1), a novel gene, the CSDUFD1 gene for cystatin and DUF19 domain containing 1, the 5' end of a novel gene, part of a pseudogene similar to KIAA1272, KIAA0884, Drosophila CG5521 and rat Tulip 1 and 2 proteins and a CpG island, complete sequence Length = 138752 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tagtgaagaaagcaggggct 88 |||||||||||||||||||| Sbjct: 17849 tagtgaagaaagcaggggct 17868
>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete sequence Length = 209743 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 188800 atagtactactactactact 188781
>emb|AL049695.20|HSJ236J16 Human DNA sequence from clone RP1-236J16 on chromosome 6q21-22.1 Contains a cytokine inducible SH2-containing protein 6 (CISH6) pseudogene, complete sequence Length = 106348 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cagcaatagtactactacta 182 |||||||||||||||||||| Sbjct: 90175 cagcaatagtactactacta 90194
>emb|AL034349.3|HS86D1 Human DNA sequence from clone RP1-86D1 on chromosome 6q22.2-23.1 Contains two novel genes and the 5' end of the PTPRK gene for protein tyrosine phosphatase, receptor type K (R-PTP-KAPPA) and a CpG island, complete sequence Length = 112604 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ggggcttttctgaaattttt 102 |||||||||||||||||||| Sbjct: 27257 ggggcttttctgaaattttt 27238
>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22, complete sequence Length = 180599 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 55714 agcaatactactactactactact 55737
>dbj|AP004368.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1139B11 Length = 136548 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 18457 atagtactactactactact 18476
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 133729 atagtactactactactact 133748
>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 7/11 Length = 349943 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 |||||||||| ||||||||||||| Sbjct: 22011 agcaatagtaatactactactact 22034
>emb|CR388069.10| Zebrafish DNA sequence from clone DKEY-65D16 in linkage group 3, complete sequence Length = 219206 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 92960 agcaatactactactactactact 92983
>emb|BX927298.8| Zebrafish DNA sequence from clone CH211-15J1 in linkage group 1, complete sequence Length = 81258 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 40020 agcaatactactactactactact 39997
>emb|CR376796.8| Zebrafish DNA sequence from clone CH211-278J12 in linkage group 20, complete sequence Length = 125886 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 98932 atagtactactactactact 98951
>emb|BX323886.7| Zebrafish DNA sequence from clone CH211-127B11 in linkage group 4, complete sequence Length = 158224 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 90724 atagtactactactactact 90705
>emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in linkage group 19 Contains two CpG islands, complete sequence Length = 175786 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aatagtactactactactac 186 |||||||||||||||||||| Sbjct: 98451 aatagtactactactactac 98432
>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14, complete sequence Length = 137130 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 44601 agcaatactactactactactact 44624
>emb|BX682550.7| Zebrafish DNA sequence from clone DKEY-93N13 in linkage group 3, complete sequence Length = 149762 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 15878 agcaatactactactactactact 15901
>emb|BX511085.16| Zebrafish DNA sequence from clone DKEY-273I10 in linkage group 22, complete sequence Length = 117103 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 160 catcagcaatagtactactactactact 187 ||||| ||||| |||||||||||||||| Sbjct: 41404 catcaccaatattactactactactact 41377
>dbj|AK102444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N15, full insert sequence Length = 1781 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 44 atagtactactactactact 25
>emb|BX469891.9| Zebrafish DNA sequence from clone CH211-226B21 in linkage group 2, complete sequence Length = 175261 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 97225 agcaatactactactactactact 97248
>emb|BX814425.1|CNS0AEKM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB73ZC01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1992 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 1832 atagtactactactactact 1813
>dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197, complete sequence Length = 112846 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ttttctgaaatttttgtaaa 107 |||||||||||||||||||| Sbjct: 98827 ttttctgaaatttttgtaaa 98808
>emb|AL935306.6| Zebrafish DNA sequence from clone DKEY-65O9, complete sequence Length = 207183 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 158542 agcaatactactactactactact 158565
>emb|AL929184.7| Zebrafish DNA sequence from clone CH211-125N20, complete sequence Length = 168257 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 127374 agcaatactactactactactact 127351
>gb|AY741542.1| Hordeum vulgare subsp. vulgare TEL1 gene, partial sequence Length = 1245 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 |||| ||||||||||||||||||| Sbjct: 1128 agcactagtactactactactact 1151
>gb|AY395045.1|AY395040S06 Schistosoma mansoni two-DBD-nuclear receptor gene, exon 6 Length = 1554 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gcaatagtactactactact 184 |||||||||||||||||||| Sbjct: 1011 gcaatagtactactactact 1030
>gb|AY395036.1| Schistosoma mansoni two-DBD-nuclear receptor mRNA, complete cds Length = 5144 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gcaatagtactactactact 184 |||||||||||||||||||| Sbjct: 3157 gcaatagtactactactact 3176
>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence Length = 138838 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 atttttgtaaatctcgtttttatc 120 |||||| ||||||||||||||||| Sbjct: 134503 atttttttaaatctcgtttttatc 134526
>emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 in linkage group 15, complete sequence Length = 179458 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 35482 agcaatactactactactactact 35505
>emb|AL844521.15| Zebrafish DNA sequence from clone DKEY-155O15 in linkage group 19, complete sequence Length = 213269 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 210672 atagtactactactactact 210691
>gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complete sequence Length = 207528 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 172851 atagtactactactactact 172870
>emb|AL840627.7| Zebrafish DNA sequence from clone CH211-278B16 in linkage group 17, complete sequence Length = 164375 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 agcaatagtactactactactact 187 ||||||| |||||||||||||||| Sbjct: 64102 agcaatactactactactactact 64079
>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete sequence Length = 189829 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 12769 atagtactactactactact 12750
>gb|AC153605.2| Mus musculus 6 BAC RP23-346H23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229744 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atagtactactactactact 187 |||||||||||||||||||| Sbjct: 182773 atagtactactactactact 182754 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 32,155,999 Number of extensions: 1879127 Number of successful extensions: 240970 Number of sequences better than 10.0: 94 Number of HSP's gapped: 240863 Number of HSP's successfully gapped: 95 Length of query: 235 Length of database: 18,610,659,111 Length adjustment: 21 Effective length of query: 214 Effective length of database: 18,513,255,126 Effective search space: 3961836596964 Effective search space used: 3961836596964 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)