ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61o23 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g32120:12002.t02855:unspliced-genomic ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial| precursor, putative, expressed Length = 3370 Score = 246 bits (531), Expect = 2e-64 Identities = 90/139 (64%), Positives = 115/139 (82%) Frame = +1 / +2 Query: 322 FLSTLSPAADVLALANVEVDLSAIPEGTTITVKWRGKPLFIRHRTQADIDAARTTALAEL 501 F+ ++S + DVLALA++EVDLS+I GTT+TVKWRGKP+FIR RT+ DI+ A + + L Sbjct: 2591 FVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDIGSL 2770 Query: 502 KDPQTDDVRVKKPEWLVLLGVCTHLGCVPMGNSGDYNGWFCPCHGSHYDTSGRIRKGPAP 681 +DPQ D RVK PEWLV++GVCTHLGC+P+ N+GD+ GWFCPCHGSHYD SGRIRKGPAP Sbjct: 2771 RDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP 2950 Query: 682 LNLEVPPYQFLSDDKIMVG 738 NLEVP Y FL ++K+++G Sbjct: 2951 YNLEVPTYSFLEENKLLIG 3007 Score = 100 bits (214), Expect(2) = 5e-22 Identities = 47/74 (63%), Positives = 52/74 (70%) Frame = -3 / -2 Query: 743 STPTMILSSLRNW*GGTSKLRGAGPFLILPDVS**DPWQGQNQPL*SPELPIGTQPK*VQ 564 S P L S RN * GTS+L GAGP ILPD+S* DPW GQNQP SP L G QP+*V Sbjct: 3012 SQPMSNLFSSRNE*VGTSRLYGAGPLRILPDIS*CDPWHGQNQPPKSPALGSGMQPR*VH 2833 Query: 563 TPKSTSHSGFFTRT 522 TP +TSHSGF TR+ Sbjct: 2832 TPITTSHSGFLTRS 2791 Score = 23.5 bits (45), Expect(2) = 5e-22 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = -3 / -2 Query: 443 MNNGFPLHLTVIVVPSGMAD 384 + G P H TV VVP + + Sbjct: 2712 IKTGLPRHFTVTVVPGSILE 2653 Score = 49.2 bits (101), Expect = 4e-05 Identities = 28/61 (45%), Positives = 37/61 (60%) Frame = +3 / +1 Query: 531 KET*MARTFRSLHSLGLCTYGQFWRLQWLVLSLPRISLRHIRKNQKGTCSSQFRSTSLPI 710 +E *+A ++S GL + Q W L WLVLS+P I+L +IR N G C+ Q RS L I Sbjct: 2800 QEP*VAGCDWGVYSSGLHSTSQRW*LWWLVLSMPWITL*YIR*NP*GPCTIQPRSPDLLI 2979 Query: 711 S 713 S Sbjct: 2980 S 2982
>LOC_Os04g32660:12004.t02945:unspliced-genomic ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial| precursor, putative, expressed Length = 3153 Score = 241 bits (521), Expect = 4e-63 Identities = 90/141 (63%), Positives = 114/141 (80%) Frame = +1 / +3 Query: 322 FLSTLSPAADVLALANVEVDLSAIPEGTTITVKWRGKPLFIRHRTQADIDAARTTALAEL 501 F+ ++S + DVLALA++EVDLS+I GTT+TVKWRGKP+FIR RT+ DI A + + L Sbjct: 2352 FVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIALANSVDVGSL 2531 Query: 502 KDPQTDDVRVKKPEWLVLLGVCTHLGCVPMGNSGDYNGWFCPCHGSHYDTSGRIRKGPAP 681 + PQ D RVK PEWLV++GVCTHLGC+P+ N+GD+ GWFCPCHGSHYD SGRIRKGPAP Sbjct: 2532 RHPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP 2711 Query: 682 LNLEVPPYQFLSDDKIMVGVE 744 NLEVP Y FL ++K+++G E Sbjct: 2712 FNLEVPTYSFLEENKLLIG*E 2774 Score = 95.9 bits (203), Expect(2) = 2e-22 Identities = 43/72 (59%), Positives = 51/72 (70%) Frame = -3 / -3 Query: 737 PTMILSSLRNW*GGTSKLRGAGPFLILPDVS**DPWQGQNQPL*SPELPIGTQPK*VQTP 558 P L S + * GTS+L GAGP ILP++S* +PW GQNQP SP L G QP+ VQTP Sbjct: 2767 PMRSLFSSKKL*VGTSRLNGAGPLRILPEMS*WEPWHGQNQPPKSPALGRGMQPRWVQTP 2588 Query: 557 KSTSHSGFFTRT 522 +TSHSGFFTR+ Sbjct: 2587 MTTSHSGFFTRS 2552 Score = 29.9 bits (59), Expect(2) = 2e-22 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 / -3 Query: 443 MNNGFPLHLTVIVVPSGMAD 384 M GFP H TV VVP M + Sbjct: 2473 MKTGFPRHFTVTVVPGSMLE 2414 Score = 36.3 bits (73), Expect = 0.26 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = +3 / +2 Query: 528 CKET*MARTFRSLHSLGLCTYGQFWRLQWLVLSLPRISLRHIRKNQKGTCSSQ 686 C+E +A LH L + Q WR + LVL +P + LRH+ ++ +G S Q Sbjct: 2558 CEEPRVASGHWRLHPPWLHSSPQCWRFRRLVLPVPWLPLRHLWQDSQGPRSIQ 2716
>LOC_Os07g37030:12007.t03372:unspliced-genomic cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor,| putative, expressed Length = 2655 Score = 47.3 bits (97), Expect(2) = 4e-07 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +1 / +1 Query: 610 NGWFCPCHGSHYDTSGRIRKGPAPL 684 N + CPCHGS Y+ GR+ +GPAPL Sbjct: 1786 NKFICPCHGSQYNNQGRVVRGPAPL 1860 Score = 26.7 bits (52), Expect(2) = 4e-07 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 / +1 Query: 562 VCTHLGCVPMGNSGD 606 VCTHLGCV N+ + Sbjct: 1741 VCTHLGCVVPWNAAE 1785
>LOC_Os09g20980:12009.t01832:unspliced-genomic RING-H2 finger protein ATL5I, putative, expressed| Length = 1631 Score = 37.3 bits (75), Expect = 0.14 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 / +2 Query: 291 RCCSQEWCSRFLIYFKSCCRC 353 RCCS WC R+ + + CC C Sbjct: 317 RCCSSRWCWRWCCWRRGCCTC 379
>LOC_Os11g42510:12011.t03782:unspliced-genomic tyrosine aminotransferase, putative, expressed| Length = 7049 Score = 28.1 bits (55), Expect(2) = 1.3 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 / +1 Query: 600 WRLQWLVLSLPRISLRHIRK 659 WRL WL P +L+H+R+ Sbjct: 5797 WRLGWLAFCDPNGALKHVRQ 5856 Score = 23.1 bits (44), Expect(2) = 1.3 Identities = 6/9 (66%), Positives = 8/9 (88%) Frame = +3 / +3 Query: 576 GLCTYGQFW 602 G+CTYG +W Sbjct: 5682 GVCTYGVWW 5708
>LOC_Os08g33340:12008.t03075:unspliced-genomic DNA repair protein RAD23, putative, expressed| Length = 4755 Score = 34.1 bits (68), Expect = 1.3 Identities = 15/34 (44%), Positives = 15/34 (44%) Frame = +3 / -1 Query: 240 TTQNLRLLYGRSCWYGIRCCSQEWCSRFLIYFKS 341 T N R SCW CCS WCS L KS Sbjct: 2751 TCNNSRCSGDSSCWS*SSCCSWNWCSHRLATGKS 2650
>LOC_Os04g14500:12004.t01269:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 2257 Score = 33.6 bits (67), Expect = 1.8 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -3 / -2 Query: 767 YSYKTQTYSTPTMILSSLRNW*GGTSKLRGAGPFLILP 654 +S +++ + +M LS LR W + K G GP+LILP Sbjct: 1005 FSSRSEKFIMKSMRLSVLRGWSLTSLKFCGFGPYLILP 892
>LOC_Os01g08750:12001.t00753:unspliced-genomic expressed protein| Length = 19934 Score = 33.6 bits (67), Expect = 1.8 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +3 / -1 Query: 21 NRLKFLHNVRYKKSCVKVCSNQACSQFQQGSNSFI 125 N+ KFL N+R+++ +K+ + S+FQ G NS + Sbjct: 14978 NKDKFLRNIRWRQLLLKLRGSSYLSKFQ*GENSLL 14874
>LOC_Os10g28800:12010.t02229:unspliced-genomic hypothetical protein| Length = 917 Score = 33.6 bits (67), Expect = 1.8 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = +1 / -2 Query: 433 PLFIRHRTQADIDAARTTALAELKDPQT 516 PL R R +AD+ A RTTALA + P T Sbjct: 907 PLLRRLRLRADVRAGRTTALASPRQPPT 824
>LOC_Os12g22284:12012.t01967:unspliced-genomic ATP-binding cassette sub-family G member 2, putative, expressed| Length = 18245 Score = 33.1 bits (66), Expect = 2.4 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +3 / +1 Query: 297 CSQEWCSRFLIYFKSCCRCT 356 C +WC +F + F S C CT Sbjct: 11851 CKSKWCKKFFLGFASSCYCT 11910
>LOC_Os09g13630:12009.t01151:unspliced-genomic polycomb protein EMBRYONIC FLOWER 2, putative, expressed| Length = 12590 Score = 33.1 bits (66), Expect = 2.4 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +3 / +2 Query: 207 LFSLQKRRTYRTTQNLRLLYGRSCWYGIRCCSQEWCSRFLIYFK 338 L+ ++ Y+ ++ LR + + CW +R CS + SRF + K Sbjct: 9377 LYFCRRGLNYKVSEYLRFVSLKECWEVMRYCSVSFTSRFPLELK 9508
>LOC_Os02g56270:12002.t05200:unspliced-genomic expressed protein| Length = 5801 Score = 33.1 bits (66), Expect = 2.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 / +2 Query: 339 SCCRCTRLG*CRSRFICHSRRNHYHC 416 S C C C SRFIC S +H+ C Sbjct: 3923 SACSCWSTNSCCSRFICFSSTSHFIC 4000
>LOC_Os02g28680:12002.t02562:unspliced-genomic expressed protein| Length = 1869 Score = 33.1 bits (66), Expect = 2.4 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +2 / -3 Query: 251 PSLTLWSELLVWDTLLQSRMVQSISYLL*VLLPMYSPW 364 P LTL +++W L+QS+ +S L+ +LLP+ W Sbjct: 1480 PLLTLMRTMMLWSCLVQSQSQLLLSSLMLLLLPVNFVW 1367
>LOC_Os04g43430:12004.t03887:unspliced-genomic pentatricopeptide repeat protein PPR1106-17, putative, expressed| Length = 5433 Score = 29.0 bits (57), Expect(2) = 2.7 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +3 / -2 Query: 261 LYGRSCWYGIRCCSQEWCSR 320 L+ R+C CC ++WC R Sbjct: 5030 LHNRNCRDSTNCCERKWCLR 4971 Score = 26.3 bits (51), Expect(2) = 2.7 Identities = 8/32 (25%), Positives = 17/32 (53%) Frame = +3 / -1 Query: 555 FRSLHSLGLCTYGQFWRLQWLVLSLPRISLRH 650 F S LC + +W++ + ++S+ + L H Sbjct: 4098 FNFRKSNNLCQFSLYWKIVFSIISIVHLFLNH 4003
>LOC_Os01g39420:12001.t03470:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 3855 Score = 26.3 bits (51), Expect(2) = 3.2 Identities = 11/48 (22%), Positives = 22/48 (45%) Frame = -3 / -2 Query: 797 FFFFFRLTIFYSYKTQTYSTPTMILSSLRNW*GGTSKLRGAGPFLILP 654 + FFF + +++ + ++++S W K GAG +LP Sbjct: 2411 WIFFFHIAFYFALLRFLFFPNSLVMSLTMLWTSSPDKSLGAG*SSLLP 2268 Score = 23.5 bits (45), Expect(2) = 3.2 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -1 / -1 Query: 577 PSECKLLKVRAIQVSLHG 524 P+ C VRAI +S HG Sbjct: 2175 PTACMFHTVRAILLSFHG 2122
>LOC_Os10g09870:12010.t00799:unspliced-genomic receptor expression-enhancing protein 1, putative, expressed| Length = 5970 Score = 32.7 bits (65), Expect = 3.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 / -3 Query: 252 LRLLYGRSCWYGIRCCSQEWCSRFL 326 LRLL+ SC G RCCS + C F+ Sbjct: 5224 LRLLHNSSCSSGSRCCSAKRCWFFM 5150
>LOC_Os05g11700:12005.t01002:unspliced-genomic rf1 protein, mitochondrial precursor, putative, expressed| Length = 1188 Score = 32.7 bits (65), Expect = 3.3 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = +3 / -3 Query: 342 CCRCTRLG*CRSR 380 CCRCTR G CRSR Sbjct: 262 CCRCTRRGGCRSR 224
>LOC_Os07g44200:12007.t04061:unspliced-genomic transcription regulator, putative, expressed| Length = 1643 Score = 32.2 bits (64), Expect = 4.5 Identities = 8/13 (61%), Positives = 12/13 (92%) Frame = +3 / -1 Query: 267 GRSCWYGIRCCSQ 305 GR+CW+G RCC++ Sbjct: 674 GRACWWGARCCAR 636
>LOC_Os12g08720:12012.t00753:unspliced-genomic transcription regulator, putative, expressed| Length = 5882 Score = 26.3 bits (51), Expect(2) = 5.5 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 / +3 Query: 729 HGWC*ISLCFIRIKYCQSEKKKK 797 HGWC I+ F + + KKKK Sbjct: 4869 HGWCSITKLFAIPRVVPTRKKKK 4937 Score = 22.6 bits (43), Expect(2) = 5.5 Identities = 7/13 (53%), Positives = 11/13 (84%) Frame = +2 / +2 Query: 707 NFSVTTRSWLVLN 745 +F V+ ++WLVLN Sbjct: 4847 HFGVSIKTWLVLN 4885
>LOC_Os10g28830:12010.t02232:unspliced-genomic hypothetical protein| Length = 535 Score = 31.8 bits (63), Expect = 6.2 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +3 / +1 Query: 273 SCWYGIRCCSQEWCSRFLIYFKSCCRCTRLG*C 371 S WYG+ EWC R F + CR R C Sbjct: 418 SIWYGLNSIILEWCGRTH*IFWNLCREDRSSHC 516
>LOC_Os08g38370:12008.t03573:unspliced-genomic zinc finger C-x8-C-x5-C-x3-H type family protein| Length = 2979 Score = 31.8 bits (63), Expect = 6.2 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 / +2 Query: 195 SNTKLFSLQKRRTYRTTQNLRLLYGRSCWYGIRC 296 S +L + R YRT L G+ CWYG +C Sbjct: 2369 SQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKC 2470
>LOC_Os08g18079:12008.t04330:unspliced-genomic expressed protein| Length = 4726 Score = 29.0 bits (57), Expect(2) = 7.7 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -1 / -2 Query: 160 GCQLLLPLVWQR 125 GC+LLLPLVW R Sbjct: 4344 GCRLLLPLVWGR 4309 Score = 24.4 bits (47), Expect(2) = 7.7 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -2 / -1 Query: 42 CVKISIDCNNSNH 4 C+KI+ DC N +H Sbjct: 991 CIKIAKDCPNEHH 953
>LOC_Os12g23710:12012.t02101:unspliced-genomic mucin-2 precursor, putative| Length = 870 Score = 26.3 bits (51), Expect(2) = 8.6 Identities = 7/16 (43%), Positives = 9/16 (56%) Frame = +3 / -1 Query: 267 GRSCWYGIRCCSQEWC 314 G C + RCC + WC Sbjct: 543 GLWCGHWARCCGEAWC 496 Score = 22.1 bits (42), Expect(2) = 8.6 Identities = 9/20 (45%), Positives = 9/20 (45%) Frame = +3 / -1 Query: 348 RCTRLG*CRSRFICHSRRNH 407 RC CR R C SR H Sbjct: 519 RCCGEAWCRGRAECASREQH 460
>LOC_Os02g45240:12002.t04113:unspliced-genomic protein binding protein, putative, expressed| Length = 4207 Score = 31.3 bits (62), Expect = 8.6 Identities = 17/56 (30%), Positives = 31/56 (55%) Frame = +2 / -1 Query: 215 TTKKTDLSNNTKPSLTLWSELLVWDTLLQSRMVQSISYLL*VLLPMYSPWLMSKSI 382 TTKKT + T SL + + + T R V++ ++L ++LP+ +MSK++ Sbjct: 2062 TTKKTSNARKTMQSLQMKCKQI**KTNKMMRHVKNFRHILEIILPVKLRCIMSKNL 1895 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 301,706,775 Number of extensions: 4922519 Number of successful extensions: 18653 Number of sequences better than 10.0: 24 Length of query: 266 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 217 Effective length of database: 52,856,264 Effective search space: 11469809288 Effective search space used: 11469809288 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
