Clone Information

BLAST Search Result

Clone Name	FLbaf64f19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK103640:Os02g0767100	694	0.0
2	AK063351:Os02g0767100	694	0.0
3	Os08g0511200:Os08g0511200	32	1.0

>AK103640:Os02g0767100 |
          Length = 485
 Score =  694 bits (1790), Expect = 0.0
 Identities = 359/451 (79%), Positives = 383/451 (84%), Gaps = 1/451 (0%)
 Frame = +2

Query: 164  HDLLAETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVK 343
            HDLLAETRASVEEVAARILAIKKD AP++ELRELVAQMSLLLITLRQ NREILMEED+VK
Sbjct: 35   HDLLAETRASVEEVAARILAIKKDDAPRTELRELVAQMSLLLITLRQANREILMEEDRVK 94

Query: 344  GETEAAKAPVDSTTLRLHNLLYEKNHYVKAIRSCLDFQTKHPGIELVPEEEFHRAAPADI 523
             ETEAAKAPVDSTTL+LHNLLYEKNHYVKAIR+CLDFQTK+PGIELVP EEFHRAAPADI
Sbjct: 95   AETEAAKAPVDSTTLQLHNLLYEKNHYVKAIRACLDFQTKYPGIELVPTEEFHRAAPADI 154

Query: 524  RDKTLAADAAHDLMLKRLNFELVQRKELCERHEKLEQQKNSLLGTIANQXXXXXXXXXXX 703
            RDKTLAADA+HDLMLKRLNFELVQRKELC+ HEKLEQ+K+SLL TIANQ           
Sbjct: 155  RDKTLAADASHDLMLKRLNFELVQRKELCKLHEKLEQRKSSLLDTIANQKKFLSSLPTHL 214

Query: 704  XXXXXXXXPVQQQLGMLHTKKLKQHHAAELLPSPLYIIYTQLLGQKEAFGENIEVEINGS 883
                    PVQQQLGM HTKKLKQHHAAELLP+PLYI+YTQ LGQKEAFGENIEVEI GS
Sbjct: 215  KSLKKASLPVQQQLGMQHTKKLKQHHAAELLPTPLYIVYTQFLGQKEAFGENIEVEITGS 274

Query: 884  TKDAQTFAQQQAKQE-MGTLSNXXXXXXXXXXXXXXXXXXXXXXXXXKTSKEASNPALAY 1060
            TKDAQ FAQQQAKQE  GTLSN                            KEASN  +AY
Sbjct: 275  TKDAQMFAQQQAKQENAGTLSNGDNRVDDDAIDDEEDAQRRRSRSRKSVVKEASNSVVAY 334

Query: 1061 QLHPLKVVLHVYDTEDSGTKRRKLITMKFEYLAKLNVVCVGSEDSEGMDSNILCNLFPDD 1240
            QLHPLKV+LHVYDTE+SG KRRKL+ ++F+YLAKLNVVCVG EDS+G+D +ILCNLFPDD
Sbjct: 335  QLHPLKVILHVYDTEESGAKRRKLMVLRFDYLAKLNVVCVGIEDSKGLDHDILCNLFPDD 394

Query: 1241 TGLELPHQMAKLYAGEAPNFSEKDSRPYKWVQHLAGIDFLPEVPQSVGDNSNRASRSADL 1420
            TGLELPHQMAKLYAGE PNFSEKDSRPYKW QHLAGIDFLPEVP SVGD+SNRASRSADL
Sbjct: 395  TGLELPHQMAKLYAGEVPNFSEKDSRPYKWAQHLAGIDFLPEVPLSVGDDSNRASRSADL 454

Query: 1421 SSGLALYRQQNRAQTILQRIRSRKIAQMALT 1513
            SSGLALYRQQNRAQTILQRIRSRK+AQMALT
Sbjct: 455  SSGLALYRQQNRAQTILQRIRSRKVAQMALT 485

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>AK063351:Os02g0767100 |
          Length = 485

 Score =  694 bits (1790), Expect = 0.0
 Identities = 359/451 (79%), Positives = 383/451 (84%), Gaps = 1/451 (0%)
 Frame = +2

Query: 164  HDLLAETRASVEEVAARILAIKKDGAPKSELRELVAQMSLLLITLRQVNREILMEEDKVK 343
            HDLLAETRASVEEVAARILAIKKD AP++ELRELVAQMSLLLITLRQ NREILMEED+VK
Sbjct: 35   HDLLAETRASVEEVAARILAIKKDDAPRTELRELVAQMSLLLITLRQANREILMEEDRVK 94

Query: 344  GETEAAKAPVDSTTLRLHNLLYEKNHYVKAIRSCLDFQTKHPGIELVPEEEFHRAAPADI 523
             ETEAAKAPVDSTTL+LHNLLYEKNHYVKAIR+CLDFQTK+PGIELVP EEFHRAAPADI
Sbjct: 95   AETEAAKAPVDSTTLQLHNLLYEKNHYVKAIRACLDFQTKYPGIELVPTEEFHRAAPADI 154

Query: 524  RDKTLAADAAHDLMLKRLNFELVQRKELCERHEKLEQQKNSLLGTIANQXXXXXXXXXXX 703
            RDKTLAADA+HDLMLKRLNFELVQRKELC+ HEKLEQ+K+SLL TIANQ           
Sbjct: 155  RDKTLAADASHDLMLKRLNFELVQRKELCKLHEKLEQRKSSLLDTIANQKKFLSSLPTHL 214

Query: 704  XXXXXXXXPVQQQLGMLHTKKLKQHHAAELLPSPLYIIYTQLLGQKEAFGENIEVEINGS 883
                    PVQQQLGM HTKKLKQHHAAELLP+PLYI+YTQ LGQKEAFGENIEVEI GS
Sbjct: 215  KSLKKASLPVQQQLGMQHTKKLKQHHAAELLPTPLYIVYTQFLGQKEAFGENIEVEITGS 274

Query: 884  TKDAQTFAQQQAKQE-MGTLSNXXXXXXXXXXXXXXXXXXXXXXXXXKTSKEASNPALAY 1060
            TKDAQ FAQQQAKQE  GTLSN                            KEASN  +AY
Sbjct: 275  TKDAQMFAQQQAKQENAGTLSNGDNRVDDDAIDDEEDAQRRRSRSRKSVVKEASNSVVAY 334

Query: 1061 QLHPLKVVLHVYDTEDSGTKRRKLITMKFEYLAKLNVVCVGSEDSEGMDSNILCNLFPDD 1240
            QLHPLKV+LHVYDTE+SG KRRKL+ ++F+YLAKLNVVCVG EDS+G+D +ILCNLFPDD
Sbjct: 335  QLHPLKVILHVYDTEESGAKRRKLMVLRFDYLAKLNVVCVGIEDSKGLDHDILCNLFPDD 394

Query: 1241 TGLELPHQMAKLYAGEAPNFSEKDSRPYKWVQHLAGIDFLPEVPQSVGDNSNRASRSADL 1420
            TGLELPHQMAKLYAGE PNFSEKDSRPYKW QHLAGIDFLPEVP SVGD+SNRASRSADL
Sbjct: 395  TGLELPHQMAKLYAGEVPNFSEKDSRPYKWAQHLAGIDFLPEVPLSVGDDSNRASRSADL 454

Query: 1421 SSGLALYRQQNRAQTILQRIRSRKIAQMALT 1513
            SSGLALYRQQNRAQTILQRIRSRK+AQMALT
Sbjct: 455  SSGLALYRQQNRAQTILQRIRSRKVAQMALT 485

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>Os08g0511200:Os08g0511200 |
          Length = 1176

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -3

Query: 974  HRHPSY*HHHLTKCPFPAWLAVEQKFERPLCFHLSPLQYSH 852
            H HPS   H L   PFP    V    + P  FH   LQ+SH
Sbjct: 1037 HHHPSSIFHDLPPVPFPNPSLVPFHHDLPTSFHPPLLQHSH 1077


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 39,728,884
Number of extensions: 843805
Number of successful extensions: 2437
Number of sequences better than 10.0: 3
Number of HSP's gapped: 2430
Number of HSP's successfully gapped: 3
Length of query: 568
Length of database: 15,399,855
Length adjustment: 106
Effective length of query: 462
Effective length of database: 11,155,509
Effective search space: 5153845158
Effective search space used: 5153845158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result