>LOC_Os07g47140:12007.t04350:unspliced-genomic CCT motif family protein, expressed|
          Length = 3050
 Score = 30.4 bits (60), Expect(2) = 0.14
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3 / +2

                                                          
Query: 613 WSTPFDKYALHISSLISRVAYSSMCFGLN*MWECPTTSNGTNSLFNI 473
           WS  +++ A  + SL   +  ++ C GL  +   P+   G+NS F +
Sbjct: 587 WSASWEEEAPQVLSLDDIIVPTTSCHGLRPLLTPPSPEVGSNSAFTV 727



 Score = 28.1 bits (55), Expect(2) = 0.14
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1 / +1

                               
Query: 387  HVVASVWLICSLNCCLCHS 331
            H+V  V  ICS+ C LC+S
Sbjct: 1804 HIVLVVIFICSVKCDLCNS 1860

>LOC_Os03g19380:12003.t01704:unspliced-genomic CP12-2, putative, expressed|
          Length = 977

 Score = 33.6 bits (67), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2 / -1

                                                
Query: 173 GDVLMLEVGPGGGATVGRCW*WIPVRMWIGWVYLVLP 283
           G+ +  E G  GG++    W W P R W+ W++L  P
Sbjct: 137 GEPVA*EPGAPGGSSEPGRWPWRPRRGWLPWLWLPAP 27

>LOC_Os08g05520:12008.t00446:unspliced-genomic myb-like DNA-binding domain containing protein, expressed|
          Length = 2851

 Score = 32.7 bits (65), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3 / +1

                               
Query: 223  PHCRPPSWSDLQHQHVALE 167
            PHC+PP+W D Q     LE
Sbjct: 1579 PHCQPPAWPDRQRDQELLE 1635

>LOC_Os03g01560:12003.t00051:unspliced-genomic hypothetical protein|
          Length = 351

 Score = 32.7 bits (65), Expect = 2.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1 / +1

                                      
Query: 360 CSLNCCLCHSRSFIDSSSLGLGFFEFG 280
           C + C LCH R  ++ +  GLGF   G
Sbjct: 100 CQIYCALCHHRFLVELARSGLGFVGSG 180

>LOC_Os02g12570:12002.t01054:unspliced-genomic pre-mRNA cleavage complex II protein Clp1, putative, expressed|
          Length = 4377

 Score = 32.2 bits (64), Expect = 3.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2 / +3

                                  
Query: 275 PDRPTQSTSSPVSITSNAPLSPP 207
           P RP+ S SSP    S+AP SPP
Sbjct: 186 PTRPSASASSPARRRSSAPSSPP 254

>LOC_Os01g29190:12001.t02609:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 1385

 Score = 32.2 bits (64), Expect = 3.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3 / +3

                           
Query: 96  NDEGWRRLGEALQVGL 143
           NDEGWRR G A+++GL
Sbjct: 909 NDEGWRRKGVAIKLGL 956

>LOC_Os07g22430:12007.t01947:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 6828

 Score = 31.8 bits (63), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2 / +1

                                   
Query: 236  WIPVRMWIGWVYLVLPNSKKPRP 304
            W+    W+G ++L LP SK P P
Sbjct: 3973 WVLANSWVGPLFLGLPRSKTPSP 4041

>LOC_Os07g11240:12007.t00998:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 7329

 Score = 31.8 bits (63), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2 / +1

                                   
Query: 236  WIPVRMWIGWVYLVLPNSKKPRP 304
            W+    W+G ++L LP SK P P
Sbjct: 4882 WVLANSWVGPLFLGLPRSKTPSP 4950

>LOC_Os01g15934:12001.t01444:unspliced-genomic retrotransposon, putative, centromere-specific|
          Length = 4579

 Score = 31.8 bits (63), Expect = 5.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2 / -3

                                         
Query: 257  IGWVYLVLPNSKKPRPRLLLSMKLRLWQR 343
            IG + + L NSK  R +LL + K+ LWQR
Sbjct: 1397 IGKL*MQLKNSKTNRQKLLKTTKIELWQR 1311

>LOC_Os12g18090:12012.t01660:unspliced-genomic hypothetical protein|
          Length = 2717

 Score = 27.2 bits (53), Expect(2) = 6.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1 / -2

                          
Query: 360  CSLNCCLCHSRSFI 319
            CS +CC+C+  SFI
Sbjct: 2317 CSFSCCICNIVSFI 2276



 Score = 25.4 bits (49), Expect(2) = 6.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2 / -3

                               
Query: 266 PTQSTSSPVSITSNAPLSPP 207
           P  STSSPV     AP+ PP
Sbjct: 882 PLSSTSSPVFPQKPAPVWPP 823

>LOC_Os10g36580:12010.t02937:unspliced-genomic expressed protein|
          Length = 1154

 Score = 31.3 bits (62), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3 / -1

                            
Query: 433 ARRLEEDTTCCWSSVSC 383
           ARR E   TCCW S +C
Sbjct: 734 ARRSESSLTCCWYSTAC 684

>LOC_Os09g37920:12009.t03266:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 7750

 Score = 31.3 bits (62), Expect = 7.1
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +3 / -1

                                       
Query: 105 GWRRLGEALQVGLAEGAIVRGSRATC*C 188
           G RR G A   G A  A  RG RATC C
Sbjct: 295 GRRRAGHAAGSGAARRARSRGGRATCRC 212

>LOC_Os06g27670:12006.t02472:unspliced-genomic conserved hypothetical protein|
          Length = 1374

 Score = 31.3 bits (62), Expect = 7.1
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = -2 / -1

                              
Query: 161  HYRPLR*PDLQCLPQTPP 108
            HYRP R*P  Q LPQ PP
Sbjct: 1074 HYRPGR*PRHQRLPQLPP 1021

>LOC_Os02g43660:12002.t03950:unspliced-genomic blue copper protein precursor, putative, expressed|
          Length = 1910

 Score = 31.3 bits (62), Expect = 7.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2 / -3

                                   
Query: 269  RPTQSTSSPVSITSNAPLSPPLL 201
            RPT  TS P++  ++ PL+PP+L
Sbjct: 1698 RPTAPTSRPITERASLPLAPPVL 1630

>LOC_Os02g28400:12002.t02534:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 9765

 Score = 31.3 bits (62), Expect = 7.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2 / -2

                                         
Query: 257  IGWVYLVLPNSKKPRPRLLLSMKLRLWQR 343
            +G  Y+ L NSK  R +LL S K+  WQR
Sbjct: 1508 LGKPYMQLDNSKTNR*KLLKSTKIEPWQR 1422

>LOC_Os10g17724:12010.t01329:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 6460

 Score = 27.6 bits (54), Expect(2) = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1 / -3

                               
Query: 492  PIPYSTFQVSNFN*HIKGK 436
            P+PY TFQ SNF+    GK
Sbjct: 4094 PLPYHTFQRSNFDLSNHGK 4038



 Score = 25.8 bits (50), Expect(2) = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1 / -2

                                           
Query: 396  RRFHVVASVWLICSLNCCLCHSRSFIDSSSL 304
            R F    S+W I SL+C +  + S + S  L
Sbjct: 2082 RSFFFSGSLWSITSLHCSVSFTTSVVGSGLL 1990

>LOC_Os02g22800:12002.t02067:unspliced-genomic conserved hypothetical protein|
          Length = 6553

 Score = 27.6 bits (54), Expect(2) = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3 / +1

                                       
Query: 613  WSTPFDKYALHISSLISRVAYSSMCFG 533
            +++P   Y LHIS +     YSS C G
Sbjct: 2701 YNSPTTSYILHISFIKFNTPYSSTCNG 2781



 Score = 25.4 bits (49), Expect(2) = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2 / +3

                                 
Query: 275  PDRPTQSTSSPVSITSNAPLS 213
            PDRPT S  SP    ++ PLS
Sbjct: 2787 PDRPTLSLPSPPLSHASPPLS 2849

>LOC_Os11g14280:12011.t01259:unspliced-genomic transposon protein, putative, unclassified|
          Length = 6360

 Score = 30.9 bits (61), Expect = 9.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3 / -2

                                         
Query: 652 FPKRVPGKS*PYKWSTPFDKYALHISSLIS 563
           FP    G  *P  W  P DKY+L  +SL+S
Sbjct: 434 FPINFCGYL*PIGWHGPLDKYSLLTASLMS 345

>LOC_Os11g14270:12011.t01258:unspliced-genomic transposon protein, putative, unclassified|
          Length = 4331

 Score = 30.9 bits (61), Expect = 9.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3 / -3

                                          
Query: 652  FPKRVPGKS*PYKWSTPFDKYALHISSLIS 563
            FP    G  *P  W  P DKY+L  +SL+S
Sbjct: 1956 FPINFCGYL*PIGWHGPLDKYSLLTASLMS 1867

>LOC_Os08g33830:12008.t03124:unspliced-genomic polypyrimidine tract-binding protein homolog 1, putative, expressed|
          Length = 5783

 Score = 30.9 bits (61), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2 / -2

                                        
Query: 278  LPNSKKPRPRLLLSMKLRLWQRQQFSEQ 361
            LP+   P P     ++L LWQRQ+++E+
Sbjct: 1741 LPSDLDPDPSCCCLLQLNLWQRQRWTER 1658

>LOC_Os08g02904:12008.t04333:unspliced-genomic expressed protein|
          Length = 9396

 Score = 30.9 bits (61), Expect = 9.8
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -2 / -2

                           
Query: 596  QICPSHFISNF*SCI 552
            QICP HFISNF S I
Sbjct: 4010 QICPPHFISNFRSII 3966

>LOC_Os02g45750:12002.t04162:unspliced-genomic protein kinase, putative, expressed|
          Length = 3602

 Score = 30.9 bits (61), Expect = 9.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2 / -1

                                               
Query: 272  LVLPNSKKPRPRLLLSMKLRLWQRQQFSEQINQTE 376
            LVL +SK P+  L+ S+  +L  R QFS +I + E
Sbjct: 1430 LVLVSSKTPKQLLIRSVSSKLAIRSQFSGKIQEKE 1326

>LOC_Os07g47580:12007.t04591:unspliced-genomic TGF-beta-inducible nuclear protein 1, putative, expressed|
          Length = 2648

 Score = 30.9 bits (61), Expect = 9.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1 / +2

                              
Query: 384  VVASVWLICSLNCCLCHS 331
            ++  +WL+CS++ C+C S
Sbjct: 1301 ILVDIWLVCSVHSCICTS 1354


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 247,028,250
Number of extensions: 3653675
Number of successful extensions: 15280
Number of sequences better than 10.0: 23
Length of query: 229
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 180
Effective length of database: 52,856,264
Effective search space: 9514127520
Effective search space used: 9514127520
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)