ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf64e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9CR67:TMM33_MOUSE Transmembrane protein 33 - Mus musculus (Mouse) 42 0.011
2P57088:TMM33_HUMAN Transmembrane protein 33 - Homo sapiens (Human) 41 0.024
3Q9Z142:TMM33_RAT Transmembrane protein 33 - Rattus norvegicus (Rat) 40 0.031
4Q9XWV0:TMM33_CAEEL UPF0121 protein Y37D8A.17 - Caenorhabditis el... 34 2.2
5Q8BKD6:IBRD2_MOUSE E3 ubiquitin-protein ligase IBRDC2 - Mus musc... 33 6.5

>Q9CR67:TMM33_MOUSE Transmembrane protein 33 - Mus musculus (Mouse)|
          Length = 247
 Score = 42.0 bits (97), Expect = 0.011
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
 Frame = +3

Query: 1470 MYCLMFVTSKLHLKLVLVPVICWALEHVARFLRRHF----TNS-SLYRAYLEPLCTWVEA 1634
            +Y L+FV S   + + + PV+ ++L H A + ++      +NS  L R++L+ L T    
Sbjct: 97   LYSLIFVNS-YPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSFLDKLST---- 151

Query: 1635 NTTAVNFLIANAEILLGFLMILSLFSKQRNAMQTFMYWQLLKLMYHS 1775
            N   +   IA  EI L    +  LFS Q + +Q F+Y++ L L Y S
Sbjct: 152  NQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSS 198



to top

>P57088:TMM33_HUMAN Transmembrane protein 33 - Homo sapiens (Human)|
          Length = 247

 Score = 40.8 bits (94), Expect = 0.024
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
 Frame = +3

Query: 1470 MYCLMFVTSKLHLKLVLVPVICWALEHVARFLR-----RHFTNSSLYRAYLEPLCTWVEA 1634
            +Y L+FV S   + + + PV+ ++L H A + +     R   +  L R+ L+ L     A
Sbjct: 97   LYSLIFVNS-YPVTMSIFPVLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKL----SA 151

Query: 1635 NTTAVNFLIANAEILLGFLMILSLFSKQRNAMQTFMYWQLLKLMYHS 1775
            N   +   IA  EI L    +  LFS Q + +Q F+Y++ L L Y S
Sbjct: 152  NQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSS 198



to top

>Q9Z142:TMM33_RAT Transmembrane protein 33 - Rattus norvegicus (Rat)|
          Length = 247

 Score = 40.4 bits (93), Expect = 0.031
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
 Frame = +3

Query: 1470 MYCLMFVTSKLHLKLVLVPVICWALEHVARFLRRHF----TNS-SLYRAYLEPLCTWVEA 1634
            +Y L+FV S   + + + PV+ ++L H A + ++      +NS  L R+ L+ L T    
Sbjct: 97   LYSLIFVNS-YPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLPLLRSVLDKLST---- 151

Query: 1635 NTTAVNFLIANAEILLGFLMILSLFSKQRNAMQTFMYWQLLKLMYHS 1775
            N   +   IA  EI L    +  LFS Q + +Q F+Y++ L L Y S
Sbjct: 152  NQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSS 198



to top

>Q9XWV0:TMM33_CAEEL UPF0121 protein Y37D8A.17 - Caenorhabditis elegans|
          Length = 271

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 28/129 (21%), Positives = 56/129 (43%)
 Frame = +3

Query: 1470 MYCLMFVTSKLHLKLVLVPVICWALEHVARFLRRHFTNSSLYRAYLEPLCTWVEANTTAV 1649
            +Y ++F+ +   + +  +PV  +A  H   F+ +    +    + +  L  +    T   
Sbjct: 122  VYSVVFLMAA-PVSMAALPVTIYAALHACTFMTKILRETGHTSSIIPKLEQFTAHQTQNA 180

Query: 1650 NFLIANAEILLGFLMILSLFSKQRNAMQTFMYWQLLKLMYHSPLTAGYHRAIWLKIGRTA 1829
              +IA +EI L  L++  +FS + + +  F Y++ L L Y S       +A     G   
Sbjct: 181  LGIIACSEIFLVPLLVSLIFSGKGSLLLPFAYYRFLSLRYASRRNPSTRQAFAQMRGSLQ 240

Query: 1830 NPYINSYTP 1856
            N  ++S  P
Sbjct: 241  NVAMSSSCP 249



to top

>Q8BKD6:IBRD2_MOUSE E3 ubiquitin-protein ligase IBRDC2 - Mus musculus (Mouse)|
          Length = 301

 Score = 32.7 bits (73), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
 Frame = -3

Query: 1673 LCICNQKVD-------CSCVCLNPCAKRLQVCPVQRGIG 1578
            LC+C Q +D       C C+   PC K+  V  ++ G G
Sbjct: 32   LCLCEQSLDKMTMLQECQCIFCTPCLKQYMVLSIREGCG 70


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 362,712,415
Number of extensions: 7498250
Number of successful extensions: 15170
Number of sequences better than 10.0: 5
Number of HSP's gapped: 15169
Number of HSP's successfully gapped: 5
Length of query: 736
Length of database: 100,686,439
Length adjustment: 121
Effective length of query: 615
Effective length of database: 67,496,744
Effective search space: 41510497560
Effective search space used: 41510497560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top