ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf61l12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056837.1| Oryza sativa (japonica cultivar-group) Os03g0397500 (Os03g0397500) mRNA, complete cds Length = 2178 Score = 1162 bits (586), Expect = 0.0 Identities = 1032/1180 (87%), Gaps = 3/1180 (0%) Strand = Plus / Plus Query: 634 tccgacgagtgggtcgtgcacaacaaacagagtccctgggctggcaatcgtgagggcccg 693 |||||||||||| || | | |||||| ||||| |||||||| ||||| |||| || Sbjct: 618 tccgacgagtggatcctccgcaacaagcagagcccctgggccggcaagaaggaggcacca 677 Query: 694 cctgtggagctcacggacgagcagagacagtacgctgaggcacatgcggccaagaaggct 753 || | ||||||||| || |||||| | ||||| || ||||| || || ||||||||||| Sbjct: 678 cccgcggagctcactgaagagcagcgtcagtatgcggaggcgcacgctgccaagaaggcc 737 Query: 754 gagaaggaggcacgaggagaaggcaagg---agaaaacagaggtggtggtcaagagcacc 810 ||||||||||| || || ||||| |||| |||| | || |||| | |||||| || Sbjct: 738 gagaaggaggcgcgcggcgaagggaagggcgagaagtctgatatggttgccaagagtact 797 Query: 811 ttccatgggaaggaggagaaggactaccagggacgatcgtggaccactccacccaaggat 870 ||||||||||||||||||| ||| ||||| ||||| || |||| ||| || ||||||||| Sbjct: 798 ttccatgggaaggaggagagggattaccaaggacggtcatggatcacaccgcccaaggat 857 Query: 871 gccaagacgaccaacgagcgctgttatattcccaagaggtgtgtacatgagtggattgga 930 |||||| ||| |||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct: 858 gccaaggcgagcaacgagcgctgctatattcccaagaggtgtgtgcacgagtgggttggg 917 Query: 931 cacaccaagggcgtctcagcgatcagattttcccccaagtatggccatctattgctgtct 990 ||||||||||| ||||| ||||| || |||| |||||||||||| || || ||||||||| Sbjct: 918 cacaccaagggggtctcggcgattaggtttttccccaagtatggacaccttttgctgtct 977 Query: 991 gcaagtatggattgtaagattaaaatctgggacgtgcttgaatcgaagacatgtatgcgg 1050 || |||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||| Sbjct: 978 gcgagtatggattgtaagattaagatctgggatgtgctcgagtcgaggacatgtatgcgg 1037 Query: 1051 acgtacatggggcactccaaggcggtgcgggatatatcgttctctaatgacggtagtaag 1110 ||||||||||||||||| |||||||| | ||||||||||| |||||||| || | |||| Sbjct: 1038 acgtacatggggcactctaaggcggtcagagatatatcgttttctaatgatgggactaag 1097 Query: 1111 ttcttgagtgctggctatgatcggaatattcagtattgggatacggaaactgggcaggtg 1170 |||||||||||||| ||||| ||||||| |||||||||||||| || || ||||||||| Sbjct: 1098 ttcttgagtgctgggtatgacaggaatatacagtattgggatactgagaccgggcaggtg 1157 Query: 1171 atctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcctgatgaagat 1230 |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 1158 atctcgaccttctctactggcaaggtcccttatgtagtgaagctcaacccggatgaggat 1217 Query: 1231 aagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtgggatatgaag 1290 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 aagcagcatgttctcctcgctgggatgagtgacaagaagattgtgcagtgggatatgaag 1277 Query: 1291 tcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacactattaccttt 1350 ||||||||||| || || || || || |||||||| || || || || || || || ||| Sbjct: 1278 tcagggcagataacccaagagtacgaccagcacttgggagcagtcaataccatcactttt 1337 Query: 1351 gtagataataataggaggtttgtgacatctagcgatgacaagtctcttcgtgtgtgggag 1410 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1338 gtagataataataggaggtttgtgacatcaagcgatgacaagtcgcttcgtgtgtgggag 1397 Query: 1411 tttggtatccctgtagttattaagtatatcagtgagccacacatgcactccatgccgtct 1470 || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 1398 ttcggcatcccagtggtgattaagtatatcagtgaaccacacatgcattcaatgccatca 1457 Query: 1471 attgcagtacacccaaactctaactggctggcagcacagagcttggacaatcagatactg 1530 || || | ||||| || || |||||||||||||||||||||||||||||||||||| || Sbjct: 1458 atatcactgcacccgaattccaactggctggcagcacagagcttggacaatcagatattg 1517 Query: 1531 atatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgcaggccacatt 1590 |||||||| |||||||| |||||||||||||| ||||||||| ||||||| || |||||| Sbjct: 1518 atatacagtaccaaggagaggtttcaacttaacaagaagaagcggtttgcgggtcacatt 1577 Query: 1591 gtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttgtgatgtcaggg 1650 ||||||||||| |||||||| |||| |||||| || ||||||||||| ||||||||||| Sbjct: 1578 gtggcaggttacgcttgtcaagtgaacttctcaccagatgggaggttcgtgatgtcagga 1637 Query: 1651 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagattcaagacattg 1710 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1638 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagatttaagacgttg 1697 Query: 1711 aagtgccacaacggagtttgcattggatgtgagtggcatccattggagactagcaaggtt 1770 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1698 aagtgccacaatggagtttgcattggatgtgagtggcatcccttggagactagcaaggtt 1757 Query: 1771 gcaacatgtggatgggatggcgtcataaaatactgggatt 1810 ||||||||||||||||||||||| || || |||||||||| Sbjct: 1758 gcaacatgtggatgggatggcgtaattaagtactgggatt 1797 Score = 394 bits (199), Expect = e-106 Identities = 363/417 (87%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 160 ctctcctccacggacacctcccctctccgcctccccaccaaatctgccgcccccgccgtc 219 |||||||| ||||| |||| || |||||||||||| |||| || ||||||||||||||| Sbjct: 138 ctctcctcgccggacgcctcgccgctccgcctccccgccaagtcggccgcccccgccgtc 197 Query: 220 gatgagacagcgctcgcgctatccgccgccgccgcttctacctcccgtcctctcgacccc 279 || || || ||||||||||| |||||||||||||| || |||||||| || ||||||||| Sbjct: 198 gacgacacggcgctcgcgctctccgccgccgccgcgtccacctcccgcccgctcgacccc 257 Query: 280 tccctccaccgcatccccttcaaccccaccgccgaacagctctgggcgcccgtcctcggt 339 |||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 258 tccctccacctcgtcccctttaaccccaccgccgaccagctctgggcgcccgtcctcggg 317 Query: 340 cctcagcatccccacgcccccatctcatccgcctctggtcaccgtaaccacaagctcggt 399 || ||||| ||||||||||||||||| |||||||| || |||| |||||||||||||| Sbjct: 318 ccccagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctcggc 377 Query: 400 cacgtcgaagacgcagcgctcctccccttcctcttcgacgagcagtataacactttccat 459 |||||||| ||||| || |||||||||||||||||||||||||||| ||||| ||||| Sbjct: 378 cacgtcgaggacgccgccgtcctccccttcctcttcgacgagcagtacaacaccttccac 437 Query: 460 cgcttcggctacgcatctgacccctccggcctccacatcatcggcgacgcgcagtcacag 519 |||||||||||||| | ||||||||||||||||||||| |||||||||| ||| | Sbjct: 438 cgcttcggctacgccgccgacccctccggcctccacatcgtcggcgacgcccag---ccc 494 Query: 520 gcgcccgaccccgataccgtctacaacctccctccttctgagcacaagcgccgccgc 576 || |||| ||||| ||||||||||||||| | || || |||||||||||||||||| Sbjct: 495 tcggccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgc 551 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 100 atggatctcctccagtcctcctacgcgcc 128 ||||||||||||||||| |||||| |||| Sbjct: 78 atggatctcctccagtcgtcctacacgcc 106
>dbj|AK073478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C19, full insert sequence Length = 2181 Score = 1162 bits (586), Expect = 0.0 Identities = 1032/1180 (87%), Gaps = 3/1180 (0%) Strand = Plus / Plus Query: 634 tccgacgagtgggtcgtgcacaacaaacagagtccctgggctggcaatcgtgagggcccg 693 |||||||||||| || | | |||||| ||||| |||||||| ||||| |||| || Sbjct: 621 tccgacgagtggatcctccgcaacaagcagagcccctgggccggcaagaaggaggcacca 680 Query: 694 cctgtggagctcacggacgagcagagacagtacgctgaggcacatgcggccaagaaggct 753 || | ||||||||| || |||||| | ||||| || ||||| || || ||||||||||| Sbjct: 681 cccgcggagctcactgaagagcagcgtcagtatgcggaggcgcacgctgccaagaaggcc 740 Query: 754 gagaaggaggcacgaggagaaggcaagg---agaaaacagaggtggtggtcaagagcacc 810 ||||||||||| || || ||||| |||| |||| | || |||| | |||||| || Sbjct: 741 gagaaggaggcgcgcggcgaagggaagggcgagaagtctgatatggttgccaagagtact 800 Query: 811 ttccatgggaaggaggagaaggactaccagggacgatcgtggaccactccacccaaggat 870 ||||||||||||||||||| ||| ||||| ||||| || |||| ||| || ||||||||| Sbjct: 801 ttccatgggaaggaggagagggattaccaaggacggtcatggatcacaccgcccaaggat 860 Query: 871 gccaagacgaccaacgagcgctgttatattcccaagaggtgtgtacatgagtggattgga 930 |||||| ||| |||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct: 861 gccaaggcgagcaacgagcgctgctatattcccaagaggtgtgtgcacgagtgggttggg 920 Query: 931 cacaccaagggcgtctcagcgatcagattttcccccaagtatggccatctattgctgtct 990 ||||||||||| ||||| ||||| || |||| |||||||||||| || || ||||||||| Sbjct: 921 cacaccaagggggtctcggcgattaggtttttccccaagtatggacaccttttgctgtct 980 Query: 991 gcaagtatggattgtaagattaaaatctgggacgtgcttgaatcgaagacatgtatgcgg 1050 || |||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||| Sbjct: 981 gcgagtatggattgtaagattaagatctgggatgtgctcgagtcgaggacatgtatgcgg 1040 Query: 1051 acgtacatggggcactccaaggcggtgcgggatatatcgttctctaatgacggtagtaag 1110 ||||||||||||||||| |||||||| | ||||||||||| |||||||| || | |||| Sbjct: 1041 acgtacatggggcactctaaggcggtcagagatatatcgttttctaatgatgggactaag 1100 Query: 1111 ttcttgagtgctggctatgatcggaatattcagtattgggatacggaaactgggcaggtg 1170 |||||||||||||| ||||| ||||||| |||||||||||||| || || ||||||||| Sbjct: 1101 ttcttgagtgctgggtatgacaggaatatacagtattgggatactgagaccgggcaggtg 1160 Query: 1171 atctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcctgatgaagat 1230 |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 1161 atctcgaccttctctactggcaaggtcccttatgtagtgaagctcaacccggatgaggat 1220 Query: 1231 aagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtgggatatgaag 1290 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 aagcagcatgttctcctcgctgggatgagtgacaagaagattgtgcagtgggatatgaag 1280 Query: 1291 tcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacactattaccttt 1350 ||||||||||| || || || || || |||||||| || || || || || || || ||| Sbjct: 1281 tcagggcagataacccaagagtacgaccagcacttgggagcagtcaataccatcactttt 1340 Query: 1351 gtagataataataggaggtttgtgacatctagcgatgacaagtctcttcgtgtgtgggag 1410 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1341 gtagataataataggaggtttgtgacatcaagcgatgacaagtcgcttcgtgtgtgggag 1400 Query: 1411 tttggtatccctgtagttattaagtatatcagtgagccacacatgcactccatgccgtct 1470 || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 1401 ttcggcatcccagtggtgattaagtatatcagtgaaccacacatgcattcaatgccatca 1460 Query: 1471 attgcagtacacccaaactctaactggctggcagcacagagcttggacaatcagatactg 1530 || || | ||||| || || |||||||||||||||||||||||||||||||||||| || Sbjct: 1461 atatcactgcacccgaattccaactggctggcagcacagagcttggacaatcagatattg 1520 Query: 1531 atatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgcaggccacatt 1590 |||||||| |||||||| |||||||||||||| ||||||||| ||||||| || |||||| Sbjct: 1521 atatacagtaccaaggagaggtttcaacttaacaagaagaagcggtttgcgggtcacatt 1580 Query: 1591 gtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttgtgatgtcaggg 1650 ||||||||||| |||||||| |||| |||||| || ||||||||||| ||||||||||| Sbjct: 1581 gtggcaggttacgcttgtcaagtgaacttctcaccagatgggaggttcgtgatgtcagga 1640 Query: 1651 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagattcaagacattg 1710 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1641 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagatttaagacgttg 1700 Query: 1711 aagtgccacaacggagtttgcattggatgtgagtggcatccattggagactagcaaggtt 1770 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1701 aagtgccacaatggagtttgcattggatgtgagtggcatcccttggagactagcaaggtt 1760 Query: 1771 gcaacatgtggatgggatggcgtcataaaatactgggatt 1810 ||||||||||||||||||||||| || || |||||||||| Sbjct: 1761 gcaacatgtggatgggatggcgtaattaagtactgggatt 1800 Score = 394 bits (199), Expect = e-106 Identities = 363/417 (87%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 160 ctctcctccacggacacctcccctctccgcctccccaccaaatctgccgcccccgccgtc 219 |||||||| ||||| |||| || |||||||||||| |||| || ||||||||||||||| Sbjct: 141 ctctcctcgccggacgcctcgccgctccgcctccccgccaagtcggccgcccccgccgtc 200 Query: 220 gatgagacagcgctcgcgctatccgccgccgccgcttctacctcccgtcctctcgacccc 279 || || || ||||||||||| |||||||||||||| || |||||||| || ||||||||| Sbjct: 201 gacgacacggcgctcgcgctctccgccgccgccgcgtccacctcccgcccgctcgacccc 260 Query: 280 tccctccaccgcatccccttcaaccccaccgccgaacagctctgggcgcccgtcctcggt 339 |||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 261 tccctccacctcgtcccctttaaccccaccgccgaccagctctgggcgcccgtcctcggg 320 Query: 340 cctcagcatccccacgcccccatctcatccgcctctggtcaccgtaaccacaagctcggt 399 || ||||| ||||||||||||||||| |||||||| || |||| |||||||||||||| Sbjct: 321 ccccagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctcggc 380 Query: 400 cacgtcgaagacgcagcgctcctccccttcctcttcgacgagcagtataacactttccat 459 |||||||| ||||| || |||||||||||||||||||||||||||| ||||| ||||| Sbjct: 381 cacgtcgaggacgccgccgtcctccccttcctcttcgacgagcagtacaacaccttccac 440 Query: 460 cgcttcggctacgcatctgacccctccggcctccacatcatcggcgacgcgcagtcacag 519 |||||||||||||| | ||||||||||||||||||||| |||||||||| ||| | Sbjct: 441 cgcttcggctacgccgccgacccctccggcctccacatcgtcggcgacgcccag---ccc 497 Query: 520 gcgcccgaccccgataccgtctacaacctccctccttctgagcacaagcgccgccgc 576 || |||| ||||| ||||||||||||||| | || || |||||||||||||||||| Sbjct: 498 tcggccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgc 554 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 100 atggatctcctccagtcctcctacgcgcc 128 ||||||||||||||||| |||||| |||| Sbjct: 81 atggatctcctccagtcgtcctacacgcc 109
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 1154 bits (582), Expect = 0.0 Identities = 1028/1176 (87%), Gaps = 3/1176 (0%) Strand = Plus / Minus Query: 634 tccgacgagtgggtcgtgcacaacaaacagagtccctgggctggcaatcgtgagggcccg 693 |||||||||||| || | | |||||| ||||| |||||||| ||||| |||| || Sbjct: 145709 tccgacgagtggatcctccgcaacaagcagagcccctgggccggcaagaaggaggcacca 145650 Query: 694 cctgtggagctcacggacgagcagagacagtacgctgaggcacatgcggccaagaaggct 753 || | ||||||||| || |||||| | ||||| || ||||| || || ||||||||||| Sbjct: 145649 cccgcggagctcactgaagagcagcgtcagtatgcggaggcgcacgctgccaagaaggcc 145590 Query: 754 gagaaggaggcacgaggagaaggcaagg---agaaaacagaggtggtggtcaagagcacc 810 ||||||||||| || || ||||| |||| |||| | || |||| | |||||| || Sbjct: 145589 gagaaggaggcgcgcggcgaagggaagggcgagaagtctgatatggttgccaagagtact 145530 Query: 811 ttccatgggaaggaggagaaggactaccagggacgatcgtggaccactccacccaaggat 870 ||||||||||||||||||| ||| ||||| ||||| || |||| ||| || ||||||||| Sbjct: 145529 ttccatgggaaggaggagagggattaccaaggacggtcatggatcacaccgcccaaggat 145470 Query: 871 gccaagacgaccaacgagcgctgttatattcccaagaggtgtgtacatgagtggattgga 930 |||||| ||| |||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct: 145469 gccaaggcgagcaacgagcgctgctatattcccaagaggtgtgtgcacgagtgggttggg 145410 Query: 931 cacaccaagggcgtctcagcgatcagattttcccccaagtatggccatctattgctgtct 990 ||||||||||| ||||| ||||| || |||| |||||||||||| || || ||||||||| Sbjct: 145409 cacaccaagggggtctcggcgattaggtttttccccaagtatggacaccttttgctgtct 145350 Query: 991 gcaagtatggattgtaagattaaaatctgggacgtgcttgaatcgaagacatgtatgcgg 1050 || |||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||| Sbjct: 145349 gcgagtatggattgtaagattaagatctgggatgtgctcgagtcgaggacatgtatgcgg 145290 Query: 1051 acgtacatggggcactccaaggcggtgcgggatatatcgttctctaatgacggtagtaag 1110 ||||||||||||||||| |||||||| | ||||||||||| |||||||| || | |||| Sbjct: 145289 acgtacatggggcactctaaggcggtcagagatatatcgttttctaatgatgggactaag 145230 Query: 1111 ttcttgagtgctggctatgatcggaatattcagtattgggatacggaaactgggcaggtg 1170 |||||||||||||| ||||| ||||||| |||||||||||||| || || ||||||||| Sbjct: 145229 ttcttgagtgctgggtatgacaggaatatacagtattgggatactgagaccgggcaggtg 145170 Query: 1171 atctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcctgatgaagat 1230 |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 145169 atctcgaccttctctactggcaaggtcccttatgtagtgaagctcaacccggatgaggat 145110 Query: 1231 aagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtgggatatgaag 1290 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 145109 aagcagcatgttctcctcgctgggatgagtgacaagaagattgtgcagtgggatatgaag 145050 Query: 1291 tcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacactattaccttt 1350 ||||||||||| || || || || || |||||||| || || || || || || || ||| Sbjct: 145049 tcagggcagataacccaagagtacgaccagcacttgggagcagtcaataccatcactttt 144990 Query: 1351 gtagataataataggaggtttgtgacatctagcgatgacaagtctcttcgtgtgtgggag 1410 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 144989 gtagataataataggaggtttgtgacatcaagcgatgacaagtcgcttcgtgtgtgggag 144930 Query: 1411 tttggtatccctgtagttattaagtatatcagtgagccacacatgcactccatgccgtct 1470 || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 144929 ttcggcatcccagtggtgattaagtatatcagtgaaccacacatgcattcaatgccatca 144870 Query: 1471 attgcagtacacccaaactctaactggctggcagcacagagcttggacaatcagatactg 1530 || || | ||||| || || |||||||||||||||||||||||||||||||||||| || Sbjct: 144869 atatcactgcacccgaattccaactggctggcagcacagagcttggacaatcagatattg 144810 Query: 1531 atatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgcaggccacatt 1590 |||||||| |||||||| |||||||||||||| ||||||||| ||||||| || |||||| Sbjct: 144809 atatacagtaccaaggagaggtttcaacttaacaagaagaagcggtttgcgggtcacatt 144750 Query: 1591 gtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttgtgatgtcaggg 1650 ||||||||||| |||||||| |||| |||||| || ||||||||||| ||||||||||| Sbjct: 144749 gtggcaggttacgcttgtcaagtgaacttctcaccagatgggaggttcgtgatgtcagga 144690 Query: 1651 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagattcaagacattg 1710 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 144689 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagatttaagacgttg 144630 Query: 1711 aagtgccacaacggagtttgcattggatgtgagtggcatccattggagactagcaaggtt 1770 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 144629 aagtgccacaatggagtttgcattggatgtgagtggcatcccttggagactagcaaggtt 144570 Query: 1771 gcaacatgtggatgggatggcgtcataaaatactgg 1806 ||||||||||||||||||||||| || || |||||| Sbjct: 144569 gcaacatgtggatgggatggcgtaattaagtactgg 144534 Score = 394 bits (199), Expect = e-106 Identities = 363/417 (87%), Gaps = 3/417 (0%) Strand = Plus / Minus Query: 160 ctctcctccacggacacctcccctctccgcctccccaccaaatctgccgcccccgccgtc 219 |||||||| ||||| |||| || |||||||||||| |||| || ||||||||||||||| Sbjct: 146189 ctctcctcgccggacgcctcgccgctccgcctccccgccaagtcggccgcccccgccgtc 146130 Query: 220 gatgagacagcgctcgcgctatccgccgccgccgcttctacctcccgtcctctcgacccc 279 || || || ||||||||||| |||||||||||||| || |||||||| || ||||||||| Sbjct: 146129 gacgacacggcgctcgcgctctccgccgccgccgcgtccacctcccgcccgctcgacccc 146070 Query: 280 tccctccaccgcatccccttcaaccccaccgccgaacagctctgggcgcccgtcctcggt 339 |||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 146069 tccctccacctcgtcccctttaaccccaccgccgaccagctctgggcgcccgtcctcggg 146010 Query: 340 cctcagcatccccacgcccccatctcatccgcctctggtcaccgtaaccacaagctcggt 399 || ||||| ||||||||||||||||| |||||||| || |||| |||||||||||||| Sbjct: 146009 ccccagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctcggc 145950 Query: 400 cacgtcgaagacgcagcgctcctccccttcctcttcgacgagcagtataacactttccat 459 |||||||| ||||| || |||||||||||||||||||||||||||| ||||| ||||| Sbjct: 145949 cacgtcgaggacgccgccgtcctccccttcctcttcgacgagcagtacaacaccttccac 145890 Query: 460 cgcttcggctacgcatctgacccctccggcctccacatcatcggcgacgcgcagtcacag 519 |||||||||||||| | ||||||||||||||||||||| |||||||||| ||| | Sbjct: 145889 cgcttcggctacgccgccgacccctccggcctccacatcgtcggcgacgcccag---ccc 145833 Query: 520 gcgcccgaccccgataccgtctacaacctccctccttctgagcacaagcgccgccgc 576 || |||| ||||| ||||||||||||||| | || || |||||||||||||||||| Sbjct: 145832 tcggccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgc 145776 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 100 atggatctcctccagtcctcctacgcgcc 128 ||||||||||||||||| |||||| |||| Sbjct: 146249 atggatctcctccagtcgtcctacacgcc 146221
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 1154 bits (582), Expect = 0.0 Identities = 1028/1176 (87%), Gaps = 3/1176 (0%) Strand = Plus / Plus Query: 634 tccgacgagtgggtcgtgcacaacaaacagagtccctgggctggcaatcgtgagggcccg 693 |||||||||||| || | | |||||| ||||| |||||||| ||||| |||| || Sbjct: 15899242 tccgacgagtggatcctccgcaacaagcagagcccctgggccggcaagaaggaggcacca 15899301 Query: 694 cctgtggagctcacggacgagcagagacagtacgctgaggcacatgcggccaagaaggct 753 || | ||||||||| || |||||| | ||||| || ||||| || || ||||||||||| Sbjct: 15899302 cccgcggagctcactgaagagcagcgtcagtatgcggaggcgcacgctgccaagaaggcc 15899361 Query: 754 gagaaggaggcacgaggagaaggcaagg---agaaaacagaggtggtggtcaagagcacc 810 ||||||||||| || || ||||| |||| |||| | || |||| | |||||| || Sbjct: 15899362 gagaaggaggcgcgcggcgaagggaagggcgagaagtctgatatggttgccaagagtact 15899421 Query: 811 ttccatgggaaggaggagaaggactaccagggacgatcgtggaccactccacccaaggat 870 ||||||||||||||||||| ||| ||||| ||||| || |||| ||| || ||||||||| Sbjct: 15899422 ttccatgggaaggaggagagggattaccaaggacggtcatggatcacaccgcccaaggat 15899481 Query: 871 gccaagacgaccaacgagcgctgttatattcccaagaggtgtgtacatgagtggattgga 930 |||||| ||| |||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct: 15899482 gccaaggcgagcaacgagcgctgctatattcccaagaggtgtgtgcacgagtgggttggg 15899541 Query: 931 cacaccaagggcgtctcagcgatcagattttcccccaagtatggccatctattgctgtct 990 ||||||||||| ||||| ||||| || |||| |||||||||||| || || ||||||||| Sbjct: 15899542 cacaccaagggggtctcggcgattaggtttttccccaagtatggacaccttttgctgtct 15899601 Query: 991 gcaagtatggattgtaagattaaaatctgggacgtgcttgaatcgaagacatgtatgcgg 1050 || |||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||| Sbjct: 15899602 gcgagtatggattgtaagattaagatctgggatgtgctcgagtcgaggacatgtatgcgg 15899661 Query: 1051 acgtacatggggcactccaaggcggtgcgggatatatcgttctctaatgacggtagtaag 1110 ||||||||||||||||| |||||||| | ||||||||||| |||||||| || | |||| Sbjct: 15899662 acgtacatggggcactctaaggcggtcagagatatatcgttttctaatgatgggactaag 15899721 Query: 1111 ttcttgagtgctggctatgatcggaatattcagtattgggatacggaaactgggcaggtg 1170 |||||||||||||| ||||| ||||||| |||||||||||||| || || ||||||||| Sbjct: 15899722 ttcttgagtgctgggtatgacaggaatatacagtattgggatactgagaccgggcaggtg 15899781 Query: 1171 atctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcctgatgaagat 1230 |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| ||| Sbjct: 15899782 atctcgaccttctctactggcaaggtcccttatgtagtgaagctcaacccggatgaggat 15899841 Query: 1231 aagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtgggatatgaag 1290 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 15899842 aagcagcatgttctcctcgctgggatgagtgacaagaagattgtgcagtgggatatgaag 15899901 Query: 1291 tcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacactattaccttt 1350 ||||||||||| || || || || || |||||||| || || || || || || || ||| Sbjct: 15899902 tcagggcagataacccaagagtacgaccagcacttgggagcagtcaataccatcactttt 15899961 Query: 1351 gtagataataataggaggtttgtgacatctagcgatgacaagtctcttcgtgtgtgggag 1410 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 15899962 gtagataataataggaggtttgtgacatcaagcgatgacaagtcgcttcgtgtgtgggag 15900021 Query: 1411 tttggtatccctgtagttattaagtatatcagtgagccacacatgcactccatgccgtct 1470 || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| || Sbjct: 15900022 ttcggcatcccagtggtgattaagtatatcagtgaaccacacatgcattcaatgccatca 15900081 Query: 1471 attgcagtacacccaaactctaactggctggcagcacagagcttggacaatcagatactg 1530 || || | ||||| || || |||||||||||||||||||||||||||||||||||| || Sbjct: 15900082 atatcactgcacccgaattccaactggctggcagcacagagcttggacaatcagatattg 15900141 Query: 1531 atatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgcaggccacatt 1590 |||||||| |||||||| |||||||||||||| ||||||||| ||||||| || |||||| Sbjct: 15900142 atatacagtaccaaggagaggtttcaacttaacaagaagaagcggtttgcgggtcacatt 15900201 Query: 1591 gtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttgtgatgtcaggg 1650 ||||||||||| |||||||| |||| |||||| || ||||||||||| ||||||||||| Sbjct: 15900202 gtggcaggttacgcttgtcaagtgaacttctcaccagatgggaggttcgtgatgtcagga 15900261 Query: 1651 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagattcaagacattg 1710 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 15900262 gatggtgaaggtagttgctggttctgggactggaaaagctgcaggagatttaagacgttg 15900321 Query: 1711 aagtgccacaacggagtttgcattggatgtgagtggcatccattggagactagcaaggtt 1770 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 15900322 aagtgccacaatggagtttgcattggatgtgagtggcatcccttggagactagcaaggtt 15900381 Query: 1771 gcaacatgtggatgggatggcgtcataaaatactgg 1806 ||||||||||||||||||||||| || || |||||| Sbjct: 15900382 gcaacatgtggatgggatggcgtaattaagtactgg 15900417 Score = 394 bits (199), Expect = e-106 Identities = 363/417 (87%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 160 ctctcctccacggacacctcccctctccgcctccccaccaaatctgccgcccccgccgtc 219 |||||||| ||||| |||| || |||||||||||| |||| || ||||||||||||||| Sbjct: 15898762 ctctcctcgccggacgcctcgccgctccgcctccccgccaagtcggccgcccccgccgtc 15898821 Query: 220 gatgagacagcgctcgcgctatccgccgccgccgcttctacctcccgtcctctcgacccc 279 || || || ||||||||||| |||||||||||||| || |||||||| || ||||||||| Sbjct: 15898822 gacgacacggcgctcgcgctctccgccgccgccgcgtccacctcccgcccgctcgacccc 15898881 Query: 280 tccctccaccgcatccccttcaaccccaccgccgaacagctctgggcgcccgtcctcggt 339 |||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 15898882 tccctccacctcgtcccctttaaccccaccgccgaccagctctgggcgcccgtcctcggg 15898941 Query: 340 cctcagcatccccacgcccccatctcatccgcctctggtcaccgtaaccacaagctcggt 399 || ||||| ||||||||||||||||| |||||||| || |||| |||||||||||||| Sbjct: 15898942 ccccagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctcggc 15899001 Query: 400 cacgtcgaagacgcagcgctcctccccttcctcttcgacgagcagtataacactttccat 459 |||||||| ||||| || |||||||||||||||||||||||||||| ||||| ||||| Sbjct: 15899002 cacgtcgaggacgccgccgtcctccccttcctcttcgacgagcagtacaacaccttccac 15899061 Query: 460 cgcttcggctacgcatctgacccctccggcctccacatcatcggcgacgcgcagtcacag 519 |||||||||||||| | ||||||||||||||||||||| |||||||||| ||| | Sbjct: 15899062 cgcttcggctacgccgccgacccctccggcctccacatcgtcggcgacgcccag---ccc 15899118 Query: 520 gcgcccgaccccgataccgtctacaacctccctccttctgagcacaagcgccgccgc 576 || |||| ||||| ||||||||||||||| | || || |||||||||||||||||| Sbjct: 15899119 tcggccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgc 15899175 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 100 atggatctcctccagtcctcctacgcgcc 128 ||||||||||||||||| |||||| |||| Sbjct: 15898702 atggatctcctccagtcgtcctacacgcc 15898730
>ref|NM_100933.2| Arabidopsis thaliana nucleotide binding (AT1G10580) mRNA, complete cds Length = 2073 Score = 295 bits (149), Expect = 4e-76 Identities = 527/653 (80%) Strand = Plus / Plus Query: 1041 atgtatgcggacgtacatggggcactccaaggcggtgcgggatatatcgttctctaatga 1100 ||||||| |||| |||||||| ||| |||| || ||| ||||||| | ||||| ||||| Sbjct: 1023 atgtatgaggacttacatgggtcacgccaaagctgtgagggatatttgcttctccaatga 1082 Query: 1101 cggtagtaagttcttgagtgctggctatgatcggaatattcagtattgggatacggaaac 1160 || ||| ||||||| |||||| |||||| ||| ||| |||||||||| |||||||| Sbjct: 1083 tgggtctaaattcttgactgctgggtatgataagaacattaagtattgggacacggaaac 1142 Query: 1161 tgggcaggtgatctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcc 1220 ||| || || || ||||| ||||| ||||| ||| | || ||||| || ||||| ||||| Sbjct: 1143 tggccaagttatatcgactttctccactgggaagattccgtatgtggttaagctgaatcc 1202 Query: 1221 tgatgaagataagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtg 1280 ||||| || |||||| | ||| | | ||||| |||||||| ||||||||||||||||| Sbjct: 1203 ggatgatgacaagcagaacattttgttggctggtatgagtgataagaagattgtgcagtg 1262 Query: 1281 ggatatgaagtcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacac 1340 |||||| || | ||| || | || || || |||||||||||||| ||||| || || || Sbjct: 1263 ggatattaatacgggggaggttacgcaagagtatgatcagcacttgggggcagttaatac 1322 Query: 1341 tattacctttgtagataataataggaggtttgtgacatctagcgatgacaagtctcttcg 1400 ||| || ||||| || ||||| || || ||||| || || |||||||| |||||||| || Sbjct: 1323 tatcacatttgtggacaataacagaagatttgtcacgtcgagcgatgataagtctctccg 1382 Query: 1401 tgtgtgggagtttggtatccctgtagttattaagtatatcagtgagccacacatgcactc 1460 ||| ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||| || Sbjct: 1383 tgtttgggaatttgggatcccggtggttatcaagtatatcagtgagcctcatatgcattc 1442 Query: 1461 catgccgtctattgcagtacacccaaactctaactggctggcagcacagagcttggacaa 1520 ||||| || ||| | || ||||| || |||||||| || |||||||| ||||| || Sbjct: 1443 tatgccttccatttctgttcacccgaatggaaactggcttgctgcacagagtttggataa 1502 Query: 1521 tcagatactgatatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgc 1580 ||||| ||||| ||||| ||| ||||||||||| || ||||| |||||||||||||| Sbjct: 1503 ccagattctgatctacagtacccgagaaaggtttcagctgaataaaaagaagaggtttgc 1562 Query: 1581 aggccacattgtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttgt 1640 ||| |||||||| || |||||||| || || || | |||||| || ||||| ||||||| Sbjct: 1563 agggcacattgttgccggttatgcatgccaagttaacttctcgccagatggacggtttgt 1622 Query: 1641 gatgtcaggggatggtgaaggtagttgctggttctgggactggaaaagctgca 1693 |||||||| |||||||| |||| |||||||| ||||||||||| ||||||| Sbjct: 1623 aatgtcaggagatggtgagggtaagtgctggttttgggactggaagagctgca 1675
>gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence Length = 89934 Score = 295 bits (149), Expect = 4e-76 Identities = 527/653 (80%) Strand = Plus / Minus Query: 1041 atgtatgcggacgtacatggggcactccaaggcggtgcgggatatatcgttctctaatga 1100 ||||||| |||| |||||||| ||| |||| || ||| ||||||| | ||||| ||||| Sbjct: 73801 atgtatgaggacttacatgggtcacgccaaagctgtgagggatatttgcttctccaatga 73742 Query: 1101 cggtagtaagttcttgagtgctggctatgatcggaatattcagtattgggatacggaaac 1160 || ||| ||||||| |||||| |||||| ||| ||| |||||||||| |||||||| Sbjct: 73741 tgggtctaaattcttgactgctgggtatgataagaacattaagtattgggacacggaaac 73682 Query: 1161 tgggcaggtgatctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcc 1220 ||| || || || ||||| ||||| ||||| ||| | || ||||| || ||||| ||||| Sbjct: 73681 tggccaagttatatcgactttctccactgggaagattccgtatgtggttaagctgaatcc 73622 Query: 1221 tgatgaagataagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtg 1280 ||||| || |||||| | ||| | | ||||| |||||||| ||||||||||||||||| Sbjct: 73621 ggatgatgacaagcagaacattttgttggctggtatgagtgataagaagattgtgcagtg 73562 Query: 1281 ggatatgaagtcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacac 1340 |||||| || | ||| || | || || || |||||||||||||| ||||| || || || Sbjct: 73561 ggatattaatacgggggaggttacgcaagagtatgatcagcacttgggggcagttaatac 73502 Query: 1341 tattacctttgtagataataataggaggtttgtgacatctagcgatgacaagtctcttcg 1400 ||| || ||||| || ||||| || || ||||| || || |||||||| |||||||| || Sbjct: 73501 tatcacatttgtggacaataacagaagatttgtcacgtcgagcgatgataagtctctccg 73442 Query: 1401 tgtgtgggagtttggtatccctgtagttattaagtatatcagtgagccacacatgcactc 1460 ||| ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||| || Sbjct: 73441 tgtttgggaatttgggatcccggtggttatcaagtatatcagtgagcctcatatgcattc 73382 Query: 1461 catgccgtctattgcagtacacccaaactctaactggctggcagcacagagcttggacaa 1520 ||||| || ||| | || ||||| || |||||||| || |||||||| ||||| || Sbjct: 73381 tatgccttccatttctgttcacccgaatggaaactggcttgctgcacagagtttggataa 73322 Query: 1521 tcagatactgatatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgc 1580 ||||| ||||| ||||| ||| ||||||||||| || ||||| |||||||||||||| Sbjct: 73321 ccagattctgatctacagtacccgagaaaggtttcagctgaataaaaagaagaggtttgc 73262 Query: 1581 aggccacattgtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttgt 1640 ||| |||||||| || |||||||| || || || | |||||| || ||||| ||||||| Sbjct: 73261 agggcacattgttgccggttatgcatgccaagttaacttctcgccagatggacggtttgt 73202 Query: 1641 gatgtcaggggatggtgaaggtagttgctggttctgggactggaaaagctgca 1693 |||||||| |||||||| |||| |||||||| ||||||||||| ||||||| Sbjct: 73201 aatgtcaggagatggtgagggtaagtgctggttttgggactggaagagctgca 73149
>dbj|AK228012.1| Arabidopsis thaliana mRNA for putative pre-mRNA splicing factor, clone: RAFL14-53-J24 Length = 2058 Score = 281 bits (142), Expect = 5e-72 Identities = 527/654 (80%), Gaps = 1/654 (0%) Strand = Plus / Plus Query: 1041 atgtatgcggacgtacatggggcactccaaggcggtgcgggatatatcgttctctaatga 1100 ||||||| |||| |||||||| ||| |||| || ||| ||||||| | ||||| ||||| Sbjct: 997 atgtatgaggacttacatgggtcacgccaaagctgtgagggatatttgcttctccaatga 1056 Query: 1101 cggtagtaagttcttgagtgctggctatgatcggaatattcagtattgggatacggaaac 1160 || ||| ||||||| |||||| |||||| ||| ||| |||||||||| |||||||| Sbjct: 1057 tgggtctaaattcttgactgctgggtatgataagaacattaagtattgggacacggaaac 1116 Query: 1161 tgggcaggtgatctcgaccttctctactggaaaggtaccttatgtcgtgaagctcaatcc 1220 ||| || || || ||||| ||||| ||||| ||| | || ||||| || ||||| ||||| Sbjct: 1117 tggccaagttatatcgactttctccactgggaagattccgtatgtggttaagctgaatcc 1176 Query: 1221 tgatgaagataagcagcatattctccttgctgggatgagtgacaagaagattgtgcagtg 1280 ||||| || |||||| | ||| | | ||||| |||||||| ||||||||||||||||| Sbjct: 1177 ggatgatgacaagcagaacattttgttggctggtatgagtgataagaagattgtgcagtg 1236 Query: 1281 ggatatgaagtcagggcagatcacacaggaatatgatcagcacttaggggcggtgaacac 1340 |||||| || | ||| || | || || || |||||||||||||| ||||| || || || Sbjct: 1237 ggatattaatacgggggaggttacgcaagagtatgatcagcacttgggggcagttaatac 1296 Query: 1341 tattacctttgtagataataataggaggtttgtgacatctagcgatgacaagtctcttcg 1400 ||| || ||||| || ||||| || || ||||| || || |||||||| |||||||| || Sbjct: 1297 tatcacatttgtggacaataacagaagatttgtcacgtcgagcgatgataagtctctccg 1356 Query: 1401 tgtgtgggagtttggtatccctgtagttattaagtatatcagtgagccacacatgcactc 1460 ||| ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||| || Sbjct: 1357 tgtttgggaatttgggatcccggtggttatcaagtatatcagtgagcctcatatgcattc 1416 Query: 1461 catgccgtctattgcagtacacccaaactctaactggctggcagcacagagcttggacaa 1520 ||||| || ||| | || ||||| || |||||||| || |||||||| ||||| || Sbjct: 1417 tatgccttccatttctgttcacccgaatggaaactggcttgctgcacagagtttggataa 1476 Query: 1521 tcagatactgatatacagcaccaaggaaaggtttcaacttaataagaagaagaggtttgc 1580 ||||| ||||| ||||| ||| ||||||||||| || ||||| |||||||||||||| Sbjct: 1477 ccagattctgatctacagtacccgagaaaggtttcagctgaataaaaagaagaggtttgc 1536 Query: 1581 aggccaca-ttgtggcaggttatgcttgtcaggtgagcttctctcctgatgggaggtttg 1639 ||| |||| |||| || |||||||| || || || | |||||| || ||||| |||||| Sbjct: 1537 agggcacatttgttgccggttatgcatgccaagttaacttctcgccagatggacggtttg 1596 Query: 1640 tgatgtcaggggatggtgaaggtagttgctggttctgggactggaaaagctgca 1693 | |||||||| |||||||| |||| |||||||| ||||||||||| ||||||| Sbjct: 1597 taatgtcaggagatggtgagggtaagtgctggttttgggactggaagagctgca 1650
>emb|BX929357.2| Gallus gallus finished cDNA, clone ChEST979j15 Length = 798 Score = 48.1 bits (24), Expect = 0.14 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 accgcatccccttcaaccccaccg 310 |||||||||||||||||||||||| Sbjct: 32 accgcatccccttcaaccccaccg 55
>dbj|AP002370.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-160H12, complete sequence Length = 174697 Score = 48.1 bits (24), Expect = 0.14 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1342 attacctttgtagataataataggaggt 1369 |||||||||||||| ||||||||||||| Sbjct: 147191 attacctttgtagagaataataggaggt 147164
>dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-682K9, complete sequence Length = 197847 Score = 48.1 bits (24), Expect = 0.14 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1342 attacctttgtagataataataggaggt 1369 |||||||||||||| ||||||||||||| Sbjct: 68221 attacctttgtagagaataataggaggt 68194
>gb|AC150429.2| Branchiostoma floridae clone CH302-92H15, complete sequence Length = 112163 Score = 46.1 bits (23), Expect = 0.56 Identities = 23/23 (100%) Strand = Plus / Minus Query: 236 cgctatccgccgccgccgcttct 258 ||||||||||||||||||||||| Sbjct: 83098 cgctatccgccgccgccgcttct 83076
>gb|BC081103.1| Xenopus laevis MGC83346 protein, mRNA (cDNA clone MGC:83346 IMAGE:6865165), complete cds Length = 2320 Score = 46.1 bits (23), Expect = 0.56 Identities = 59/71 (83%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagcagcatattctccttgctgggatgagtgacaagaagattg 1273 ||||||||||||||||||| ||| || | | | ||||| ||| ||| |||||||||| Sbjct: 1124 tcaatcctgatgaagataaacagaatctatttgtggctggaatgtctgataagaagattg 1183 Query: 1274 tgcagtgggat 1284 ||||||||||| Sbjct: 1184 tgcagtgggat 1194
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 46.1 bits (23), Expect = 0.56 Identities = 23/23 (100%) Strand = Plus / Plus Query: 780 ggagaaaacagaggtggtggtca 802 ||||||||||||||||||||||| Sbjct: 2163 ggagaaaacagaggtggtggtca 2185
>gb|AC005602.1|AC005602 Homo sapiens chromosome 19, cosmid F19843, complete sequence Length = 39951 Score = 46.1 bits (23), Expect = 0.56 Identities = 23/23 (100%) Strand = Plus / Plus Query: 780 ggagaaaacagaggtggtggtca 802 ||||||||||||||||||||||| Sbjct: 28895 ggagaaaacagaggtggtggtca 28917
>gb|BC126114.1| Homo sapiens cell division cycle 40 homolog (S. cerevisiae), mRNA (cDNA clone MGC:161392 IMAGE:8991830), complete cds Length = 3457 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1163 tcaatcctgatgaagataagca 1184
>ref|NM_015891.2| Homo sapiens cell division cycle 40 homolog (S. cerevisiae) (CDC40), mRNA Length = 3866 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1166 tcaatcctgatgaagataagca 1187
>ref|XM_001154334.1| PREDICTED: Pan troglodytes cell division cycle 40 homolog, transcript variant 1 (CDC40), mRNA Length = 3644 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 929 tcaatcctgatgaagataagca 950
>ref|XM_518687.2| PREDICTED: Pan troglodytes cell division cycle 40 homolog, transcript variant 2 (CDC40), mRNA Length = 3930 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1215 tcaatcctgatgaagataagca 1236
>ref|NM_007581.2| Mus musculus calcium channel, voltage-dependent, beta 3 subunit (Cacnb3), transcript variant 1, mRNA Length = 2837 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgctcgcgctatccgccgccgccgc 254 ||||||||||| |||||||||||||| Sbjct: 286 gcgctcgcgctctccgccgccgccgc 311
>gb|BC117145.1| Homo sapiens cell division cycle 40 homolog (S. cerevisiae), mRNA (cDNA clone MGC:150754 IMAGE:40125696), complete cds Length = 3457 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1163 tcaatcctgatgaagataagca 1184
>ref|XM_001088397.1| PREDICTED: Macaca mulatta cell division cycle 40 homolog (CDC40), mRNA Length = 3895 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1166 tcaatcctgatgaagataagca 1187
>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence Length = 115339 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 ctcccctctccgcctccccacc 198 |||||||||||||||||||||| Sbjct: 85356 ctcccctctccgcctccccacc 85377
>gb|BC018059.1| Homo sapiens cDNA clone IMAGE:4811841, **** WARNING: chimeric clone **** Length = 1981 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1160 tcaatcctgatgaagataagca 1181
>dbj|AK148088.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370013J24 product:calcium channel, voltage-dependent, beta 3 subunit, full insert sequence Length = 2734 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgctcgcgctatccgccgccgccgc 254 ||||||||||| |||||||||||||| Sbjct: 284 gcgctcgcgctctccgccgccgccgc 309
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 ctcccctctccgcctccccacc 198 |||||||||||||||||||||| Sbjct: 1016295 ctcccctctccgcctccccacc 1016316 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2241 aatacttcctctatctcaaaa 2261 ||||||||||||||||||||| Sbjct: 26457495 aatacttcctctatctcaaaa 26457515
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 ctcccctctccgcctccccacc 198 |||||||||||||||||||||| Sbjct: 1087074 ctcccctctccgcctccccacc 1087095 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 tccgccgccgccgcttctacc 261 ||||||||||||||||||||| Sbjct: 2405681 tccgccgccgccgcttctacc 2405661 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 tcctccccttcctcttcgacg 439 ||||||||||||||||||||| Sbjct: 14041099 tcctccccttcctcttcgacg 14041079
>emb|AL671518.3| Human DNA sequence from clone RP11-315C6 on chromosome 6 Contains the 5' end of the WASF1 gene for WAS protein family member 1, the gene for pre-mRNA splicing factor 17 (PRP17, EH binding protein 3, EHB3, CDC40), a novel gene and a CpG island, complete sequence Length = 67395 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 47242 tcaatcctgatgaagataagca 47263
>dbj|AK222721.1| Homo sapiens mRNA for pre-mRNA splicing factor 17 variant, clone: COL08147 Length = 1923 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1163 tcaatcctgatgaagataagca 1184
>dbj|AB208903.1| Homo sapiens mRNA for pre-mRNA splicing factor 17 variant protein Length = 3844 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1140 tcaatcctgatgaagataagca 1161
>ref|NM_001031129.1| Gallus gallus cathepsin O (CTSO), mRNA emb|AJ719384.1| Gallus gallus mRNA for hypothetical protein, clone 1m17 Length = 3280 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 246 cgccgccgcttctacctcccgtcctc 271 ||||||||||||| |||||||||||| Sbjct: 168 cgccgccgcttcttcctcccgtcctc 143
>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence Length = 167776 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1885 caactttcagttgggactgtag 1906 |||||||||||||||||||||| Sbjct: 78244 caactttcagttgggactgtag 78265
>emb|CR860558.1| Pongo pygmaeus mRNA; cDNA DKFZp459B247 (from clone DKFZp459B247) Length = 4099 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1380 tcaatcctgatgaagataagca 1401
>emb|CR620928.1| full-length cDNA clone CS0DK007YF20 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1883 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1139 tcaatcctgatgaagataagca 1160
>ref|XM_956666.1| Neurospora crassa OR74A HEAT SHOCK PROTEIN HSP88 (NCU05269.1) partial mRNA Length = 2214 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 739 gcggccaagaaggctgagaaggaggc 764 |||||||||||||||||| ||||||| Sbjct: 2086 gcggccaagaaggctgaggaggaggc 2111
>ref|XM_954872.1| Neurospora crassa OR74A hypothetical protein (NCU06103.1) partial mRNA Length = 3672 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 741 ggccaagaaggctgagaaggag 762 |||||||||||||||||||||| Sbjct: 1797 ggccaagaaggctgagaaggag 1818
>dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-718B20, complete sequences Length = 211652 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1498 ctggcagcacagagcttggaca 1519 |||||||||||||||||||||| Sbjct: 65141 ctggcagcacagagcttggaca 65120
>gb|AF038392.1|AF038392 Homo sapiens pre-mRNA splicing factor (PRP17) mRNA, complete cds Length = 1979 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1166 tcaatcctgatgaagataagca 1187
>gb|AF061241.1|AF061241 Homo sapiens splicing factor hPRP17 mRNA, complete cds Length = 1746 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 1139 tcaatcctgatgaagataagca 1160
>gb|AF069523.1|AF069523 Neurospora crassa heat shock protein Hsp88 mRNA, complete cds Length = 2603 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 739 gcggccaagaaggctgagaaggaggc 764 |||||||||||||||||| ||||||| Sbjct: 2201 gcggccaagaaggctgaggaggaggc 2226
>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 97056 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 ctcccctctccgcctccccacc 198 |||||||||||||||||||||| Sbjct: 11566 ctcccctctccgcctccccacc 11587
>gb|BC111061.1| Homo sapiens cell division cycle 40 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5744210), complete cds Length = 3421 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1214 tcaatcctgatgaagataagca 1235 |||||||||||||||||||||| Sbjct: 2572 tcaatcctgatgaagataagca 2593
>emb|AL672038.7| Mouse DNA sequence from clone RP23-317H19 on chromosome X, complete sequence Length = 181127 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2075 gcttcattttcagtttttcttc 2096 |||||||||||||||||||||| Sbjct: 18103 gcttcattttcagtttttcttc 18082
>gb|AC156543.10| Mus musculus chromosome 15, clone RP23-220F2, complete sequence Length = 199715 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgctcgcgctatccgccgccgccgc 254 ||||||||||| |||||||||||||| Sbjct: 34319 gcgctcgcgctctccgccgccgccgc 34344
>ref|XM_001023241.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00494570) mRNA, complete cds Length = 1830 Score = 42.1 bits (21), Expect = 8.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1774 acatgtggatgggatggcgtcataaaatactgggatt 1810 ||||||||||||||||| |||| ||||| ||||||| Sbjct: 1792 acatgtggatgggatggtctcattaaatattgggatt 1828
>ref|XM_001195741.1| PREDICTED: Strongylocentrotus purpuratus similar to MGC83346 protein (LOC584496), mRNA Length = 1771 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 928 ggacacaccaagggcgtctcagcgatcag 956 ||||||||||||||||| |||||||||| Sbjct: 887 ggacacaccaagggcgtggcagcgatcag 915
>ref|XM_784356.2| PREDICTED: Strongylocentrotus purpuratus similar to MGC83346 protein (LOC584496), mRNA Length = 1771 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 928 ggacacaccaagggcgtctcagcgatcag 956 ||||||||||||||||| |||||||||| Sbjct: 887 ggacacaccaagggcgtggcagcgatcag 915
>ref|NM_001072300.1| Oryza sativa (japonica cultivar-group) Os11g0151600 (Os11g0151600) mRNA, complete cds Length = 2793 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tccgccgccgccgcttctacc 261 ||||||||||||||||||||| Sbjct: 495 tccgccgccgccgcttctacc 515
>ref|XM_001063953.1| PREDICTED: Rattus norvegicus cell division cycle 40 homolog (yeast) (predicted) (Cdc40_predicted), mRNA Length = 3089 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1582 ggccacattgtggcaggttatgcttgtcaggtg 1614 |||||||| || ||||| ||||||||||||||| Sbjct: 1525 ggccacatggtagcaggctatgcttgtcaggtg 1557
>ref|XM_342154.3| PREDICTED: Rattus norvegicus cell division cycle 40 homolog (yeast) (predicted) (Cdc40_predicted), mRNA Length = 2690 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1582 ggccacattgtggcaggttatgcttgtcaggtg 1614 |||||||| || ||||| ||||||||||||||| Sbjct: 1126 ggccacatggtagcaggctatgcttgtcaggtg 1158
>gb|DQ483205.1| Gymnogyps californianus contig 97A genomic sequence Length = 406 Score = 42.1 bits (21), Expect = 8.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 754 gagaaggaggcacgaggagaaggca 778 |||||||||||| |||||||||||| Sbjct: 175 gagaaggaggcaagaggagaaggca 151
>gb|AC159998.6| Mus musculus BAC clone RP24-576J22 from chromosome 10, complete sequence Length = 166313 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 769 ggagaaggcaaggagaaaaca 789 ||||||||||||||||||||| Sbjct: 75611 ggagaaggcaaggagaaaaca 75591
>gb|AF053137.1|HSH3D1 Homo sapiens histone deacetylase 3 gene, exons 4, 5, 6, 7, 8, 9, and 10 Length = 4666 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 746 agaaggctgagaaggaggcac 766 ||||||||||||||||||||| Sbjct: 2317 agaaggctgagaaggaggcac 2297
>gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL H158), complete sequence Length = 118995 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 746 agaaggctgagaaggaggcac 766 ||||||||||||||||||||| Sbjct: 96015 agaaggctgagaaggaggcac 96035
>gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence Length = 111122 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 tcctccccttcctcttcgacg 439 ||||||||||||||||||||| Sbjct: 29507 tcctccccttcctcttcgacg 29487
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 tccgccgccgccgcttctacc 261 ||||||||||||||||||||| Sbjct: 57778 tccgccgccgccgcttctacc 57758
>ref|XM_532261.2| PREDICTED: Canis familiaris similar to Pre-mRNA splicing factor PRP17 (hPRP17) (Cell division cycle 40 homolog) (EH-binding protein 3) (Ehb3), transcript variant 1 (LOC475025), mRNA Length = 1848 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1594 gcaggttatgcttgtcaggtg 1614 ||||||||||||||||||||| Sbjct: 1537 gcaggttatgcttgtcaggtg 1557
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 791 aggtggtggtcaagagcacct 811 ||||||||||||||||||||| Sbjct: 198630 aggtggtggtcaagagcacct 198650
>ref|XM_658917.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6405.2) partial mRNA Length = 738 Score = 42.1 bits (21), Expect = 8.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 atccgccgccgccgcttctacctcc 264 ||||||||||||||| ||||||||| Sbjct: 228 atccgccgccgccgcctctacctcc 252
>emb|AL627089.13| Mouse DNA sequence from clone RP23-107H23 on chromosome 4, complete sequence Length = 182375 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1342 attacctttgtagataataat 1362 ||||||||||||||||||||| Sbjct: 152661 attacctttgtagataataat 152681
>gb|AC113152.4| Homo sapiens BAC clone RP11-245L10 from 4, complete sequence Length = 109659 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1640 tgatgtcaggggatggtgaag 1660 ||||||||||||||||||||| Sbjct: 81904 tgatgtcaggggatggtgaag 81924
>gb|AC097625.11| Homo sapiens X BAC RP11-478H11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194492 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1353 agataataataggaggtttgt 1373 ||||||||||||||||||||| Sbjct: 130780 agataataataggaggtttgt 130760
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 8.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 184 ctccgcctccccaccaaatctgccgcccccgccgtcgatga 224 |||||||||||||||||| | | ||||||||||| ||||| Sbjct: 22259375 ctccgcctccccaccaaagccacggcccccgccgttgatga 22259415
>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8, complete sequence Length = 211489 Score = 42.1 bits (21), Expect = 8.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2004 aatgtaccgtgtaccataccatacc 2028 |||||||||||||||| |||||||| Sbjct: 57387 aatgtaccgtgtaccaaaccatacc 57363
>gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, complete sequence Length = 205516 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 746 agaaggctgagaaggaggcac 766 ||||||||||||||||||||| Sbjct: 21998 agaaggctgagaaggaggcac 21978
>emb|BX883047.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 6/11 Length = 349571 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 898 attcccaagaggtgtgtacat 918 ||||||||||||||||||||| Sbjct: 235776 attcccaagaggtgtgtacat 235796
>dbj|AK103658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135G24, full insert sequence Length = 2794 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tccgccgccgccgcttctacc 261 ||||||||||||||||||||| Sbjct: 496 tccgccgccgccgcttctacc 516
>emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on chromosome 2, complete sequence Length = 228137 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gccggaggatgagtcgctctc 164 ||||||||||||||||||||| Sbjct: 185418 gccggaggatgagtcgctctc 185398
>emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-930O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175988 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2074 ggcttcattttcagtttttct 2094 ||||||||||||||||||||| Sbjct: 4052 ggcttcattttcagtttttct 4072
>gb|AF059650.1|AF059650 Homo sapiens histone deacetylase 3 (HDAC3) gene, complete cds Length = 16015 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 746 agaaggctgagaaggaggcac 766 ||||||||||||||||||||| Sbjct: 9755 agaaggctgagaaggaggcac 9735
>emb|Z81512.1|CEF25C8 Caenorhabditis elegans Cosmid F25C8, complete sequence Length = 40029 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1933 cgatgtcacgagtgaaaacat 1953 ||||||||||||||||||||| Sbjct: 34964 cgatgtcacgagtgaaaacat 34944
>emb|Z95559.1|CEY41E3 Caenorhabditis elegans YAC Y41E3, complete sequence Length = 150641 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2081 ttttcagtttttcttcgtttt 2101 ||||||||||||||||||||| Sbjct: 76710 ttttcagtttttcttcgtttt 76690
>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146366 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2241 aatacttcctctatctcaaaa 2261 ||||||||||||||||||||| Sbjct: 84581 aatacttcctctatctcaaaa 84561
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 42.1 bits (21), Expect = 8.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 184 ctccgcctccccaccaaatctgccgcccccgccgtcgatga 224 |||||||||||||||||| | | ||||||||||| ||||| Sbjct: 10277 ctccgcctccccaccaaagccacggcccccgccgttgatga 10317
>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library) contains Bmx gene, complete sequence Length = 159446 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1353 agataataataggaggtttgt 1373 ||||||||||||||||||||| Sbjct: 49340 agataataataggaggtttgt 49320
>ref|XM_741178.1| Plasmodium chabaudi chabaudi T-complex protein beta subunit (PC000573.03.0) partial mRNA Length = 1599 Score = 42.1 bits (21), Expect = 8.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2077 ttcattttcagtttttcttcgtttt 2101 |||||||||| |||||||||||||| Sbjct: 830 ttcattttcattttttcttcgtttt 806 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 389,896,434 Number of extensions: 21443397 Number of successful extensions: 128305 Number of sequences better than 10.0: 75 Number of HSP's gapped: 128295 Number of HSP's successfully gapped: 94 Length of query: 2295 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2272 Effective length of database: 18,503,978,556 Effective search space: 42041039279232 Effective search space used: 42041039279232 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
