ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf64d09 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g22350:12003.t01986:unspliced-genomic suppressor of SWI4 1, putative, expressed| Length = 3009 Score = 148 bits (317), Expect(6) = e-142 Identities = 60/72 (83%), Positives = 64/72 (88%) Frame = +1 / +3 Query: 343 DFVNVASPLGVTHFLILSNPKSLPHLRFAKSPQGPTYTCQILEYALAADIANSQKRPRCP 522 DFVNV+ PLGVTHF IL+NPKS PHLR AK+PQGPTYT QI EYALAADIANSQKRPRCP Sbjct: 594 DFVNVSGPLGVTHFFILTNPKSSPHLRMAKTPQGPTYTFQIKEYALAADIANSQKRPRCP 773 Query: 523 AEIFKNSPLVVL 558 EIFKNSPLV + Sbjct: 774 PEIFKNSPLVYI 809 Score = 134 bits (287), Expect(6) = e-142 Identities = 56/64 (87%), Positives = 61/64 (95%) Frame = +1 / +3 Query: 829 KAGYGSESEPDDEAATVSLASDIDKLNRASRKSAVRLQEIGPRMTMRLVKVESGLCSGDV 1008 +AGYGSESE DDEAATVSLASD+DKLNRASRKSA+RLQEIGPRM + LVKVE+GLCSGDV Sbjct: 2235 RAGYGSESEVDDEAATVSLASDVDKLNRASRKSAIRLQEIGPRMKLHLVKVEAGLCSGDV 2414 Query: 1009 LYPQ 1020 LYPQ Sbjct: 2415 LYPQ 2426 Score = 130 bits (278), Expect(6) = e-142 Identities = 54/63 (85%), Positives = 59/63 (93%) Frame = +1 / +1 Query: 643 VKLSTCQRILLLQCDKETEVIDFRHYSIKLQPVGVSRKIRKLMQNNQVPDLRDLKDVSDY 822 VKLSTCQRILL+ D+E E+I+FRHYSIKLQPVGV+RKIRKLMQNNQVPDLRDL DVSDY Sbjct: 1099 VKLSTCQRILLIHFDREKEMINFRHYSIKLQPVGVTRKIRKLMQNNQVPDLRDLNDVSDY 1278 Query: 823 VTK 831 VTK Sbjct: 1279 VTK 1287 Score = 126 bits (269), Expect(6) = e-142 Identities = 51/57 (89%), Positives = 55/57 (96%) Frame = +1 / +1 Query: 136 WKMPLSVARKQQAVLANVDQVTGERIPKSFVFSRGKLPSTLRHLQQDLRKLMLPYTA 306 WKMP SVARKQQA +ANVDQVTG++IPKSFVFSRGKLPSTLRHLQQDLRK+MLPYTA Sbjct: 274 WKMPASVARKQQAAMANVDQVTGDKIPKSFVFSRGKLPSTLRHLQQDLRKVMLPYTA 444 Score = 57.9 bits (120), Expect(6) = e-142 Identities = 23/31 (74%), Positives = 25/31 (80%) Frame = +1 / +1 Query: 553 VLSGFNGLGEPFKSFVTFFRHLVPAIDTDTV 645 VLSGF GLGEPFKS V +FRH+ PAID TV Sbjct: 925 VLSGFGGLGEPFKSLVEYFRHMTPAIDPVTV 1017 Score = 22.6 bits (43), Expect(6) = e-142 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +3 / +1 Query: 6 ITQLLCSPKPNHGAS 50 +++ CS P+HGAS Sbjct: 52 LSRRCCSANPSHGAS 96 Score = 127 bits (271), Expect(6) = e-119 Identities = 54/69 (78%), Positives = 58/69 (84%) Frame = -2 / -3 Query: 551 TRGEFLNISAGHLGRFWEFAMSAARAYSKI*QV*VGPCGDLAKRRCGKLFGFERIRKCVT 372 TRGEFLNIS GHLGRF EFAMSAARAYS I* V*VGPCG A R+CG+L GF R++KCVT Sbjct: 802 TRGEFLNISGGHLGRFCEFAMSAARAYSFI*NV*VGPCGVFAMRKCGELLGFVRMKKCVT 623 Query: 371 PNGLATLTK 345 PNG TLTK Sbjct: 622 PNGPETLTK 596 Score = 122 bits (262), Expect(6) = e-119 Identities = 51/57 (89%), Positives = 52/57 (91%) Frame = -2 / -2 Query: 305 AV*GSMSLRRSCWR*RSVEGSLPREKTKLLGILSPVTWSTLASTACCFRATDNGIFH 135 AV*GSM+LRRSCWR RSVEGSLPREKTKLLGILSPVTWST A ACCFRATD GIFH Sbjct: 443 AV*GSMTLRRSCWRWRSVEGSLPREKTKLLGILSPVTWSTFAIAACCFRATDAGIFH 273 Score = 115 bits (245), Expect(6) = e-119 Identities = 52/62 (83%), Positives = 52/62 (83%) Frame = -2 / -3 Query: 1016 GYKTSPEHSPDSTLTKRIVILGPISWSLTALFRDALFNLSISLARLTVAASSSGSLSDPY 837 GY TSPEHSP STLTK ILGPISWSL ALF DA FNLS SLARLTVAASSS SLSDPY Sbjct: 2422 GYSTSPEHSPASTLTKCSFILGPISWSLMALFLDARFNLSTSLARLTVAASSSTSLSDPY 2243 Query: 836 PA 831 PA Sbjct: 2242 PA 2237 Score = 95.9 bits (203), Expect(6) = e-119 Identities = 42/65 (64%), Positives = 47/65 (72%) Frame = -1 / -1 Query: 828 CHIITNIFKVP*VWHLIVLHEFSNLAAHPNRLELDGVMPEIDNLCLFVTL*Q*YSLTC** 649 CHII N+ +VP*VWHL+VLHE SNLA PNRLELDGVMPEID+ V + Q LT * Sbjct: 1284 CHIIANVVQVP*VWHLVVLHELSNLAGDPNRLELDGVMPEIDHFLFSVEMYQQNPLTG*Q 1105 Query: 648 LNRIC 634 LN C Sbjct: 1104 LNLSC 1090 Score = 55.6 bits (115), Expect(6) = e-119 Identities = 25/32 (78%), Positives = 26/32 (81%) Frame = -2 / -2 Query: 647 LTVSVSIAGTKCRKKVTKLLKGSPRPLKPLST 552 LTV+ SIAG CRK TKLLKGSPRP KPLST Sbjct: 1019 LTVTGSIAGVICRKYSTKLLKGSPRPPKPLST 924 Score = 25.8 bits (50), Expect(6) = e-119 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -3 / -2 Query: 52 GLAPWLGFGLQ 20 GLAPWLGF Q Sbjct: 98 GLAPWLGFAEQ 66 Score = 87.2 bits (184), Expect(5) = 2e-55 Identities = 40/64 (62%), Positives = 45/64 (70%) Frame = -1 / -2 Query: 1023 RLWVQDVARA*PRFNFN*AHSHSWSDLLEPDSTFSGCSVQFIYITC*TYSRCFIVWFTF* 844 RL V ++ *P FNFN H WSDLLE D FSGCSV F+ IT *TYS CFI+ FTF* Sbjct: 2429 RLRV*HIS*T*PGFNFNQVQFHPWSDLLESDGAFSGCSV*FVNITG*TYSCCFIIHFTF* 2250 Query: 843 SISS 832 S+SS Sbjct: 2249 SVSS 2238 Score = 83.1 bits (175), Expect(5) = 2e-55 Identities = 37/48 (77%), Positives = 38/48 (79%) Frame = -2 / -2 Query: 776 FCMSFLILRLTPTGWSLME*CRKSITSVSLSHCSNNIL*HVDSLTVSV 633 FCMSFLILR+TPTGWSLME*C K I S SLS C N IL* VDSLT V Sbjct: 1232 FCMSFLILRVTPTGWSLME*CLKLIISFSLSKCINRIL*QVDSLTCHV 1089 Score = 64.3 bits (134), Expect(5) = 2e-55 Identities = 36/65 (55%), Positives = 43/65 (66%) Frame = -1 / -2 Query: 549 QRRVFEYLCRTPWPLLGVCDVSCKSVL*NLTSVGWTLR*LGEAQVR*ALWVREDQEMRNT 370 QR + EYL TP LL V +V +S+L L VG TLR L AQVR AL VRED+EMR+ Sbjct: 800 QR*ILEYLWGTPRSLL*VRNVGGESILLYLKCVGRTLRRLRHAQVRRALGVREDEEMRHA 621 Query: 369 QWAGN 355 Q AG+ Sbjct: 620 QRAGD 606 Score = 41.4 bits (84), Expect(5) = 2e-55 Identities = 18/24 (75%), Positives = 20/24 (83%) Frame = -1 / -1 Query: 255 RGGELAAREDEALGDPLAGDLVDV 184 RGG+LAA EDEALGD +A DLV V Sbjct: 393 RGGQLAAGEDEALGDLVASDLVHV 322 Score = 30.9 bits (61), Expect(5) = 2e-55 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -1 / -1 Query: 633 INSRDQMSKEGDKTLERLAEAIETT 559 INSR M K D+TLERLA+ + T Sbjct: 1005 INSRGHMPKIFDQTLERLAKTAKAT 931 Score = 100 bits (213), Expect(5) = 3e-53 Identities = 44/66 (66%), Positives = 49/66 (74%) Frame = +3 / +3 Query: 633 YRYG*AINMSKNIIATV*QRDRGYRFPALLHQAPACWGEPQD*KTHAEQSSARPKGP*RC 812 Y G*A+N+SK+ + T QR +F ALLHQAPACWG PQD*K HAEQ SARPKGP R Sbjct: 1089 YMTG*AVNLSKDSVDTFRQRKGNDQFQALLHQAPACWGHPQD*KAHAEQPSARPKGPERR 1268 Query: 813 **LCDK 830 * LCDK Sbjct: 1269 *RLCDK 1286 Score = 73.0 bits (153), Expect(5) = 3e-53 Identities = 38/66 (57%), Positives = 44/66 (66%) Frame = +2 / +1 Query: 830 KLDMDQKVNQTMKQRL*V*QVI*IN*TEHPEKVLSGSKRSDQE*LCA*LKLNLGYARATS 1009 +LD DQKV MKQ+L*V* V+ N*TEHPEK S S+RSDQ * C LKL GY + Sbjct: 2236 ELDTDQKVKWMMKQQL*V*PVMLTN*TEHPEKAPSDSRRSDQG*NCTWLKLKPGYVQEMC 2415 Query: 1010 CTHNLL 1027 T NL+ Sbjct: 2416 YTLNLV 2433 Score = 68.4 bits (143), Expect(5) = 3e-53 Identities = 35/64 (54%), Positives = 39/64 (60%) Frame = +2 / +1 Query: 359 PAHWVLRIS*SSRTQRAYRTCASPSHRRVQPTLVRF*STLLQLTSQTPKSGQGVLQRYSK 538 PA W RIS SSRT RA RTCA RRV PT R S L T +T +S +GV QRYS+ Sbjct: 610 PARWA*RISSSSRTPRARRTCAWRRRRRVLPTHFR*RSMLSPPTLRTHRSDRGVPQRYSR 789 Query: 539 TRLW 550 LW Sbjct: 790 IHLW 801 Score = 31.8 bits (63), Expect(5) = 3e-53 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 / +3 Query: 558 KWFQWPRRAFQEFCHLLSTFGPCY* 632 +W RAFQEF + S + PCY* Sbjct: 930 QWLWRSWRAFQEFGRIFSAYDPCY* 1004 Score = 25.4 bits (49), Expect(5) = 3e-53 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = +3 / +3 Query: 210 DPQELRLLARQ 242 DPQELRLL RQ Sbjct: 348 DPQELRLLPRQ 380 Score = 64.8 bits (135), Expect(4) = 9e-22 Identities = 34/68 (50%), Positives = 43/68 (63%) Frame = +3 / +2 Query: 348 RQRCQPIGCYAFPDPLEPKELTAPALRQVTAGSNLHLSDFRVRSCS*HRKLPKAAKVSCR 527 RQR +P+G AF P EP+EL A A + AGS LH+SD V S H +L +A +VS R Sbjct: 599 RQRLRPVGRDAFLHPHEPQELAALAHGEDAAGSYLHISDKGVCSRRRHCELTEATEVSPR 778 Query: 528 DIQKLASG 551 DIQ+ SG Sbjct: 779 DIQEFTSG 802 Score = 44.1 bits (90), Expect(4) = 9e-22 Identities = 20/26 (76%), Positives = 21/26 (80%) Frame = +2 / +2 Query: 752 ARLENSCRTIKCQT*GTLKMLVIM*Q 829 ARLE+SCRT KCQT*GT L IM*Q Sbjct: 1208 ARLESSCRTTKCQT*GT*TTLAIM*Q 1285 Score = 37.3 bits (75), Expect(4) = 9e-22 Identities = 20/39 (51%), Positives = 25/39 (64%) Frame = +3 / +2 Query: 903 IEQSIPKKCCQAPRDRTKNDYALS*S*IWAMLGRRLVPT 1019 I+ SI KK Q P DRTK++ AL *S* AM R +P+ Sbjct: 2309 IKPSIQKKRHQTPGDRTKDETALG*S*SRAMFRRCAIPS 2425 Score = 24.9 bits (48), Expect(4) = 9e-22 Identities = 14/20 (70%), Positives = 14/20 (70%) Frame = +2 / +2 Query: 578 ASLSRVLSPSFDIWSLLLIQ 637 ASLSRV S F I LLLIQ Sbjct: 950 ASLSRVWSNIFGI*PLLLIQ 1009 Score = 58.3 bits (121), Expect(3) = 4e-18 Identities = 33/68 (48%), Positives = 40/68 (58%) Frame = -3 / -1 Query: 550 PEASF*ISLQDTLAAFGSLRCQLQERTLKSDKCRLDPAVTWRSAGAVSSLGSRGSGNA*H 371 PE + *ISL DT A S +C+ +E T S+ CR DPA + A A SS GS G NA Sbjct: 801 PEVNS*ISLGDTSVASVSSQCRRREHTPLSEMCR*DPAASSPCASAASSWGS*G*RNASR 622 Query: 370 PMGWQR*R 347 P G +R*R Sbjct: 621 PTGRRR*R 598 Score = 48.3 bits (99), Expect(3) = 4e-18 Identities = 21/24 (87%), Positives = 21/24 (87%) Frame = -3 / -3 Query: 778 CSA*VF*SCGSPQQAGA*WSNAGN 707 CSA* F*SCG PQQAGA*WSNA N Sbjct: 1234 CSA*AF*SCG*PQQAGA*WSNA*N 1163 Score = 31.8 bits (63), Expect(3) = 4e-18 Identities = 18/29 (62%), Positives = 21/29 (72%) Frame = -3 / -1 Query: 997 SIAQIQL*LSA*SFLVRSLGA*QHFFGML 911 +IA++QL* SA S LVRS G * FF ML Sbjct: 2403 NIARLQL*PSAVSSLVRSPGV*WRFFWML 2317
>LOC_Os11g18980:12011.t01668:unspliced-genomic conserved hypothetical protein| Length = 3755 Score = 31.8 bits (63), Expect(2) = 0.64 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +3 / +3 Query: 543 ASGRAKWFQWPRRA 584 ASGR+ W+QWPR A Sbjct: 438 ASGRSSWWQWPRTA 479 Score = 26.7 bits (52), Expect(2) = 0.64 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = +3 / +1 Query: 570 WPRRAFQEFCHLLSTFGPCY 629 W AF CH L+ GPC+ Sbjct: 1498 WAAYAFGPTCHNLTAGGPCW 1557
>LOC_Os05g35450:12005.t03138:unspliced-genomic hypothetical protein| Length = 243 Score = 33.1 bits (66), Expect = 4.0 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 / -2 Query: 293 SMSLRRSCWR*RSVEGSLPREKTKLLGILSPVT 195 S SLR CWR R S P + + LL +L+P++ Sbjct: 119 STSLRPICWRCRRTRTSSPLQTSPLLDLLAPLS 21
>LOC_Os02g31940:12002.t02837:unspliced-genomic potassium transporter 1, putative, expressed| Length = 6213 Score = 33.1 bits (66), Expect = 4.0 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 / -3 Query: 713 RKSITSVSLSHCSNNIL*HVDSLTVSVSIAGTKCRKKV 600 R SI + S+ +CS N+ H+DSLT + + TK + + Sbjct: 1384 RTSIHNRSVLYCSPNLYTHIDSLTHIIHVQETKTDRSI 1271
>LOC_Os11g07150:12011.t00606:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1769 Score = 32.7 bits (65), Expect = 5.6 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -2 / -1 Query: 701 TSVSLSHCSNNIL*HVDSLTVSVSIAGTKCRKKVTKLLKGSPR 573 T V L C NN S S+S+ G +C + ++KGSPR Sbjct: 1082 TRVFLPTCCNNFPFQPASREWSLSMTGWRCALLILPIVKGSPR 954
>LOC_Os11g09670:12011.t00859:unspliced-genomic F-box domain containing protein, expressed| Length = 2255 Score = 32.7 bits (65), Expect = 5.6 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +1 / -2 Query: 715 HYSIKLQPVGVSRKIRKLMQNNQVPDLRDLKDVSDYVTKAGYGSESEPD 861 HY+IKL P V R R L+ N+V L D+ S EPD Sbjct: 724 HYTIKL*PCQVLRDNRLLIYRNRVAKFLFLPDIESKEPNLAVDSIPEPD 578
>LOC_Os10g33410:12010.t02641:unspliced-genomic hypothetical protein| Length = 1166 Score = 32.2 bits (64), Expect = 7.6 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +3 / +3 Query: 426 RQVTAGSNLHLSDFRVRSCS*HRKLPKAAKVSCRDIQKLASGRAKWFQWPRRAFQE 593 R +TAG L R R C+ R+ +A+ + RD+ A G + Q R A E Sbjct: 216 RAMTAGGELDGGGKRGRRCARRRRRQEASSAAARDVSSAAVGGERGSQGGRGADDE 383
>LOC_Os10g28250:12010.t02179:unspliced-genomic retrotransposon protein, putative, LINE subclass| Length = 1260 Score = 32.2 bits (64), Expect = 7.6 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -2 / -2 Query: 713 RKSITSVSLSHCSNNIL*HVDSLTVSVSIAGTKCRKKVTKLLKGSPR 573 R +TSV C N L H +L ++SI G KC + + G+P+ Sbjct: 629 RTDVTSVFRPDCWINFLFHPANLDCNLSITGCKCILLMRPGVSGNPK 489
>LOC_Os01g74540:12001.t06732:unspliced-genomic GATA zinc finger family protein, expressed| Length = 1084 Score = 32.2 bits (64), Expect = 7.6 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 / -3 Query: 1204 MLSQYSSCFTFLAIIIGCCSAP 1139 M++ S F+FLA++ CCSAP Sbjct: 590 MVTSSSCAFSFLALVFFCCSAP 525
>LOC_Os11g25980:12011.t02214:unspliced-genomic phospholipid-transporting ATPase 2, putative, expressed| Length = 21394 Score = 32.2 bits (64), Expect = 7.7 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +1 / +1 Query: 349 VNVASPLGVTHFLILSNPKSLPHLRFAKSPQGPTYTCQILEYALAADIANSQKRPRCPAE 528 V + L + +F P ++ L+ A+ +GP YT LE L +D+ N+ P Sbjct: 20368 VGMGPVLALKYFRYTYRPSAINILQKAERSRGPMYTLVNLESQLRSDMENTNISISTPPV 20547 Query: 529 IFKNS 543 KNS Sbjct: 20548 KNKNS 20562 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 380,377,452 Number of extensions: 5010735 Number of successful extensions: 17324 Number of sequences better than 10.0: 10 Length of query: 414 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 364 Effective length of database: 52,799,986 Effective search space: 19219194904 Effective search space used: 19219194904 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
