| Clone Name | FLbaf64d09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056614.1| Oryza sativa (japonica cultivar-group) Os03g0343700 (Os03g0343700) mRNA, complete cds Length = 1520 Score = 601 bits (303), Expect = e-168 Identities = 726/867 (83%) Strand = Plus / Plus Query: 129 aggcaagtggaagatgccgttgtcggtggcgcggaagcagcaggcggtgctcgctaacgt 188 ||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||| Sbjct: 157 aggcaagtggaagatgccggcgtcggtggcgcggaagcagcaggcagcgatggcgaacgt 216 Query: 189 cgaccaggtcaccggcgagaggatccccaagagcttcgtcttctcgcgcggcaagctccc 248 ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || Sbjct: 217 ggaccaggtcactggcgacaagatccccaagagcttcgtcttctcccgcggcaagctgcc 276 Query: 249 ctccacgctccgtcacctccagcaggacctccgcaagctcatgctcccctacaccgccct 308 |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 277 ctccacgctccgccatctccagcaggatctccgcaaggtcatgctcccctacaccgccct 336 Query: 309 caagctcaaggagaagaagaggaacaacctcaaggacttcgtcaacgttgccagcccatt 368 || |||||||||||||| |||||||||||||||| ||||||||||| || |||| || Sbjct: 337 gaatctcaaggagaagaaacggaacaacctcaaggatttcgtcaacgtctccggcccgtt 396 Query: 369 gggtgttacgcatttcctgatcctctcgaacccaaagagcttaccgcacctgcgcttcgc 428 ||| || ||||||||| | |||||| ||||||| ||||||| |||||| ||||| | || Sbjct: 397 gggcgtgacgcatttcttcatcctcacgaaccccaagagctcgccgcacttgcgcatggc 456 Query: 429 caagtcaccgcagggtccaacctacacttgtcagattttagagtacgctcttgcagctga 488 ||| | ||||||||||| |||||||| | |||||| ||||| ||||| || || || Sbjct: 457 gaagacgccgcagggtcctacctacacatttcagataaaggagtatgctctcgccgccga 516 Query: 489 catcgcaaactcccaaaagcggccaaggtgtcctgcagagatattcaaaaactcgcctct 548 ||| || ||||| || ||||| || |||||||| ||||||||||||| || || ||||| Sbjct: 517 cattgcgaactcacagaagcgaccgaggtgtcccccagagatattcaagaattcacctct 576 Query: 549 ggtcgtgctaagtggtttcaatggcctcggcgagcctttcaagagttttgtcaccttctt 608 | || || ||||| || || || |||||||||||||||||||| ||| | || Sbjct: 577 gactgtactcagtggctttggcggtcttggcgagcctttcaagagtttggtcgaatattt 636 Query: 609 tcgacatttggtccctgctattgatacagatacggttaagctatcaacatgtcaaagaat 668 ||| ||| || ||||||||||||| ||| || |||||||| ||||| |||||||| || Sbjct: 637 tcggcatatgacccctgctattgatccagtcactgttaagctgtcaacctgtcaaaggat 696 Query: 669 attattgctacagtgtgacaaagagacagaggttatcgatttccggcattactccatcaa 728 | ||| |||| | |||| ||| | || | ||| ||||| |||||||||||||||| Sbjct: 697 tctgttgatacatttcgacagagaaaaggaaatgatcaatttcaggcattactccatcaa 756 Query: 729 gctccagcctgttggggtgagccgcaagattagaaaactcatgcagaacaatcaagtgcc 788 |||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||| Sbjct: 757 gctccagcctgttggggtcacccgcaagattagaaagctcatgcagaacaaccaagtgcc 816 Query: 789 agacctaagggaccttaaagatgttagtgattatgtgacaaaagctggatatggatcaga 848 ||||||||||||||| || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 817 agacctaagggacctgaacgacgttagcgattatgtgacaaaagctggatacggatcaga 876 Query: 849 aagtgaaccagacgatgaagcagcgactgtaagtctagcaagtgatatagataaattgaa 908 ||||||| || ||||||||||| |||||||||||||| |||||| | || ||||| || Sbjct: 877 aagtgaagtggatgatgaagcagcaactgtaagtctagccagtgatgttgacaaattaaa 936 Query: 909 cagagcatcccgaaaaagtgctgtcaggctccaagagatcggaccaagaatgactatgcg 968 | |||||||| ||||||| || |||| ||||| |||||||||||||| |||| ||| Sbjct: 937 ccgagcatccagaaaaagcgccatcagactccaggagatcggaccaaggatgaaactgca 996 Query: 969 cttagttaaagttgaatctgggctatg 995 ||| |||||||||||| | |||||||| Sbjct: 997 cttggttaaagttgaagccgggctatg 1023
>dbj|AK060603.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A01, full insert sequence Length = 1520 Score = 601 bits (303), Expect = e-168 Identities = 726/867 (83%) Strand = Plus / Plus Query: 129 aggcaagtggaagatgccgttgtcggtggcgcggaagcagcaggcggtgctcgctaacgt 188 ||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||| Sbjct: 157 aggcaagtggaagatgccggcgtcggtggcgcggaagcagcaggcagcgatggcgaacgt 216 Query: 189 cgaccaggtcaccggcgagaggatccccaagagcttcgtcttctcgcgcggcaagctccc 248 ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || Sbjct: 217 ggaccaggtcactggcgacaagatccccaagagcttcgtcttctcccgcggcaagctgcc 276 Query: 249 ctccacgctccgtcacctccagcaggacctccgcaagctcatgctcccctacaccgccct 308 |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 277 ctccacgctccgccatctccagcaggatctccgcaaggtcatgctcccctacaccgccct 336 Query: 309 caagctcaaggagaagaagaggaacaacctcaaggacttcgtcaacgttgccagcccatt 368 || |||||||||||||| |||||||||||||||| ||||||||||| || |||| || Sbjct: 337 gaatctcaaggagaagaaacggaacaacctcaaggatttcgtcaacgtctccggcccgtt 396 Query: 369 gggtgttacgcatttcctgatcctctcgaacccaaagagcttaccgcacctgcgcttcgc 428 ||| || ||||||||| | |||||| ||||||| ||||||| |||||| ||||| | || Sbjct: 397 gggcgtgacgcatttcttcatcctcacgaaccccaagagctcgccgcacttgcgcatggc 456 Query: 429 caagtcaccgcagggtccaacctacacttgtcagattttagagtacgctcttgcagctga 488 ||| | ||||||||||| |||||||| | |||||| ||||| ||||| || || || Sbjct: 457 gaagacgccgcagggtcctacctacacatttcagataaaggagtatgctctcgccgccga 516 Query: 489 catcgcaaactcccaaaagcggccaaggtgtcctgcagagatattcaaaaactcgcctct 548 ||| || ||||| || ||||| || |||||||| ||||||||||||| || || ||||| Sbjct: 517 cattgcgaactcacagaagcgaccgaggtgtcccccagagatattcaagaattcacctct 576 Query: 549 ggtcgtgctaagtggtttcaatggcctcggcgagcctttcaagagttttgtcaccttctt 608 | || || ||||| || || || |||||||||||||||||||| ||| | || Sbjct: 577 gactgtactcagtggctttggcggtcttggcgagcctttcaagagtttggtcgaatattt 636 Query: 609 tcgacatttggtccctgctattgatacagatacggttaagctatcaacatgtcaaagaat 668 ||| ||| || ||||||||||||| ||| || |||||||| ||||| |||||||| || Sbjct: 637 tcggcatatgacccctgctattgatccagtcactgttaagctgtcaacctgtcaaaggat 696 Query: 669 attattgctacagtgtgacaaagagacagaggttatcgatttccggcattactccatcaa 728 | ||| |||| | |||| ||| | || | ||| ||||| |||||||||||||||| Sbjct: 697 tctgttgatacatttcgacagagaaaaggaaatgatcaatttcaggcattactccatcaa 756 Query: 729 gctccagcctgttggggtgagccgcaagattagaaaactcatgcagaacaatcaagtgcc 788 |||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||| Sbjct: 757 gctccagcctgttggggtcacccgcaagattagaaagctcatgcagaacaaccaagtgcc 816 Query: 789 agacctaagggaccttaaagatgttagtgattatgtgacaaaagctggatatggatcaga 848 ||||||||||||||| || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 817 agacctaagggacctgaacgacgttagcgattatgtgacaaaagctggatacggatcaga 876 Query: 849 aagtgaaccagacgatgaagcagcgactgtaagtctagcaagtgatatagataaattgaa 908 ||||||| || ||||||||||| |||||||||||||| |||||| | || ||||| || Sbjct: 877 aagtgaagtggatgatgaagcagcaactgtaagtctagccagtgatgttgacaaattaaa 936 Query: 909 cagagcatcccgaaaaagtgctgtcaggctccaagagatcggaccaagaatgactatgcg 968 | |||||||| ||||||| || |||| ||||| |||||||||||||| |||| ||| Sbjct: 937 ccgagcatccagaaaaagcgccatcagactccaggagatcggaccaaggatgaaactgca 996 Query: 969 cttagttaaagttgaatctgggctatg 995 ||| |||||||||||| | |||||||| Sbjct: 997 cttggttaaagttgaagccgggctatg 1023
>dbj|AK121906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105K15, full insert sequence Length = 1278 Score = 351 bits (177), Expect = 4e-93 Identities = 447/537 (83%) Strand = Plus / Plus Query: 129 aggcaagtggaagatgccgttgtcggtggcgcggaagcagcaggcggtgctcgctaacgt 188 ||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||| Sbjct: 144 aggcaagtggaagatgccggcgtcggtggcgcggaagcagcaggcagcgatggcgaacgt 203 Query: 189 cgaccaggtcaccggcgagaggatccccaagagcttcgtcttctcgcgcggcaagctccc 248 ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || Sbjct: 204 ggaccaggtcactggcgacaagatccccaagagcttcgtcttctcccgcggcaagctgcc 263 Query: 249 ctccacgctccgtcacctccagcaggacctccgcaagctcatgctcccctacaccgccct 308 |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 264 ctccacgctccgccatctccagcaggatctccgcaaggtcatgctcccctacaccgccct 323 Query: 309 caagctcaaggagaagaagaggaacaacctcaaggacttcgtcaacgttgccagcccatt 368 || |||||||||||||| |||||||||||||||| ||||||||||| || |||| || Sbjct: 324 gaatctcaaggagaagaaacggaacaacctcaaggatttcgtcaacgtctccggcccgtt 383 Query: 369 gggtgttacgcatttcctgatcctctcgaacccaaagagcttaccgcacctgcgcttcgc 428 ||| || ||||||||| | |||||| ||||||| ||||||| |||||| ||||| | || Sbjct: 384 gggcgtgacgcatttcttcatcctcacgaaccccaagagctcgccgcacttgcgcatggc 443 Query: 429 caagtcaccgcagggtccaacctacacttgtcagattttagagtacgctcttgcagctga 488 ||| | ||||||||||| |||||||| | |||||| ||||| ||||| || || || Sbjct: 444 gaagacgccgcagggtcctacctacacatttcagataaaggagtatgctctcgccgccga 503 Query: 489 catcgcaaactcccaaaagcggccaaggtgtcctgcagagatattcaaaaactcgcctct 548 ||| || ||||| || ||||| || |||||||| ||||||||||||| || || ||||| Sbjct: 504 cattgcgaactcacagaagcgaccgaggtgtcccccagagatattcaagaattcacctct 563 Query: 549 ggtcgtgctaagtggtttcaatggcctcggcgagcctttcaagagttttgtcaccttctt 608 | || || ||||| || || || |||||||||||||||||||| ||| | || Sbjct: 564 gactgtactcagtggctttggcggtcttggcgagcctttcaagagtttggtcgaatattt 623 Query: 609 tcgacatttggtccctgctattgatacagatacggttaagctatcaacatgtcaaag 665 ||| ||| || ||||||||||||| ||| || |||||||| ||||| |||||||| Sbjct: 624 tcggcatatgacccctgctattgatccagtcactgttaagctgtcaacctgtcaaag 680
>dbj|AK102274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089C06, full insert sequence Length = 1620 Score = 347 bits (175), Expect = 6e-92 Identities = 361/423 (85%) Strand = Plus / Plus Query: 129 aggcaagtggaagatgccgttgtcggtggcgcggaagcagcaggcggtgctcgctaacgt 188 ||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||| Sbjct: 136 aggcaagtggaagatgccggcgtcggtggcgcggaagcagcaggcagcgatggcgaacgt 195 Query: 189 cgaccaggtcaccggcgagaggatccccaagagcttcgtcttctcgcgcggcaagctccc 248 ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || Sbjct: 196 ggaccaggtcactggcgacaagatccccaagagcttcgtcttctcccgcggcaagctgcc 255 Query: 249 ctccacgctccgtcacctccagcaggacctccgcaagctcatgctcccctacaccgccct 308 |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 256 ctccacgctccgccatctccagcaggatctccgcaaggtcatgctcccctacaccgccct 315 Query: 309 caagctcaaggagaagaagaggaacaacctcaaggacttcgtcaacgttgccagcccatt 368 || |||||||||||||| |||||||||||||||| ||||||||||| || |||| || Sbjct: 316 gaatctcaaggagaagaaacggaacaacctcaaggatttcgtcaacgtctccggcccgtt 375 Query: 369 gggtgttacgcatttcctgatcctctcgaacccaaagagcttaccgcacctgcgcttcgc 428 ||| || ||||||||| | |||||| ||||||| ||||||| |||||| ||||| | || Sbjct: 376 gggcgtgacgcatttcttcatcctcacgaaccccaagagctcgccgcacttgcgcatggc 435 Query: 429 caagtcaccgcagggtccaacctacacttgtcagattttagagtacgctcttgcagctga 488 ||| | ||||||||||| |||||||| | |||||| ||||| ||||| || || || Sbjct: 436 gaagacgccgcagggtcctacctacacatttcagataaaggagtatgctctcgccgccga 495 Query: 489 catcgcaaactcccaaaagcggccaaggtgtcctgcagagatattcaaaaactcgcctct 548 ||| || ||||| || ||||| || |||||||| ||||||||||||| || || ||||| Sbjct: 496 cattgcgaactcacagaagcgaccgaggtgtcccccagagatattcaagaattcacctct 555 Query: 549 ggt 551 ||| Sbjct: 556 ggt 558 Score = 299 bits (151), Expect = 1e-77 Identities = 352/419 (84%) Strand = Plus / Plus Query: 577 ggcgagcctttcaagagttttgtcaccttctttcgacatttggtccctgctattgataca 636 |||||||||||||||||||| ||| | ||||| ||| || ||||||||||||| || Sbjct: 705 ggcgagcctttcaagagtttggtcgaatattttcggcatatgacccctgctattgatcca 764 Query: 637 gatacggttaagctatcaacatgtcaaagaatattattgctacagtgtgacaaagagaca 696 | || |||||||| ||||| |||||||| || | ||| |||| | |||| ||| | Sbjct: 765 gtcactgttaagctgtcaacctgtcaaaggattctgttgatacatttcgacagagaaaag 824 Query: 697 gaggttatcgatttccggcattactccatcaagctccagcctgttggggtgagccgcaag 756 || | ||| ||||| |||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 825 gaaatgatcaatttcaggcattactccatcaagctccagcctgttggggtcacccgcaag 884 Query: 757 attagaaaactcatgcagaacaatcaagtgccagacctaagggaccttaaagatgttagt 816 |||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| Sbjct: 885 attagaaagctcatgcagaacaaccaagtgccagacctaagggacctgaacgacgttagc 944 Query: 817 gattatgtgacaaaagctggatatggatcagaaagtgaaccagacgatgaagcagcgact 876 ||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||| Sbjct: 945 gattatgtgacaaaagctggatacggatcagaaagtgaagtggatgatgaagcagcaact 1004 Query: 877 gtaagtctagcaagtgatatagataaattgaacagagcatcccgaaaaagtgctgtcagg 936 ||||||||||| |||||| | || ||||| ||| |||||||| ||||||| || |||| Sbjct: 1005 gtaagtctagccagtgatgttgacaaattaaaccgagcatccagaaaaagcgccatcaga 1064 Query: 937 ctccaagagatcggaccaagaatgactatgcgcttagttaaagttgaatctgggctatg 995 ||||| |||||||||||||| |||| ||| ||| |||||||||||| | |||||||| Sbjct: 1065 ctccaggagatcggaccaaggatgaaactgcacttggttaaagttgaagccgggctatg 1123
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 228 bits (115), Expect = 4e-56 Identities = 172/191 (90%) Strand = Plus / Plus Query: 129 aggcaagtggaagatgccgttgtcggtggcgcggaagcagcaggcggtgctcgctaacgt 188 ||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||| Sbjct: 15084 aggcaagtggaagatgccggcgtcggtggcgcggaagcagcaggcagcgatggcgaacgt 15143 Query: 189 cgaccaggtcaccggcgagaggatccccaagagcttcgtcttctcgcgcggcaagctccc 248 ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || Sbjct: 15144 ggaccaggtcactggcgacaagatccccaagagcttcgtcttctcccgcggcaagctgcc 15203 Query: 249 ctccacgctccgtcacctccagcaggacctccgcaagctcatgctcccctacaccgccct 308 |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 15204 ctccacgctccgccatctccagcaggatctccgcaaggtcatgctcccctacaccgccct 15263 Query: 309 caagctcaagg 319 || ||||||| Sbjct: 15264 gaatctcaagg 15274 Score = 174 bits (88), Expect = 5e-40 Identities = 115/124 (92%) Strand = Plus / Plus Query: 707 atttccggcattactccatcaagctccagcctgttggggtgagccgcaagattagaaaac 766 ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| | Sbjct: 15980 atttcaggcattactccatcaagctccagcctgttggggtcacccgcaagattagaaagc 16039 Query: 767 tcatgcagaacaatcaagtgccagacctaagggaccttaaagatgttagtgattatgtga 826 ||||||||||||| ||||||||||||||||||||||| || || ||||| |||||||||| Sbjct: 16040 tcatgcagaacaaccaagtgccagacctaagggacctgaacgacgttagcgattatgtga 16099 Query: 827 caaa 830 |||| Sbjct: 16100 caaa 16103 Score = 125 bits (63), Expect = 4e-25 Identities = 192/235 (81%) Strand = Plus / Plus Query: 317 aggagaagaagaggaacaacctcaaggacttcgtcaacgttgccagcccattgggtgtta 376 |||||||||| |||||||||||||||| ||||||||||| || |||| ||||| || | Sbjct: 15385 aggagaagaaacggaacaacctcaaggatttcgtcaacgtctccggcccgttgggcgtga 15444 Query: 377 cgcatttcctgatcctctcgaacccaaagagcttaccgcacctgcgcttcgccaagtcac 436 |||||||| | |||||| ||||||| ||||||| |||||| ||||| | || ||| | | Sbjct: 15445 cgcatttcttcatcctcacgaaccccaagagctcgccgcacttgcgcatggcgaagacgc 15504 Query: 437 cgcagggtccaacctacacttgtcagattttagagtacgctcttgcagctgacatcgcaa 496 |||||||||| |||||||| | |||||| ||||| ||||| || || ||||| || | Sbjct: 15505 cgcagggtcctacctacacatttcagataaaggagtatgctctcgccgccgacattgcga 15564 Query: 497 actcccaaaagcggccaaggtgtcctgcagagatattcaaaaactcgcctctggt 551 |||| || ||||| || |||||||| ||||||||||||| || || |||||||| Sbjct: 15565 actcacagaagcgaccgaggtgtcccccagagatattcaagaattcacctctggt 15619 Score = 121 bits (61), Expect = 6e-24 Identities = 139/165 (84%) Strand = Plus / Plus Query: 831 agctggatatggatcagaaagtgaaccagacgatgaagcagcgactgtaagtctagcaag 890 ||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 17054 agctggatacggatcagaaagtgaagtggatgatgaagcagcaactgtaagtctagccag 17113 Query: 891 tgatatagataaattgaacagagcatcccgaaaaagtgctgtcaggctccaagagatcgg 950 |||| | || ||||| ||| |||||||| ||||||| || |||| ||||| |||||||| Sbjct: 17114 tgatgttgacaaattaaaccgagcatccagaaaaagcgccatcagactccaggagatcgg 17173 Query: 951 accaagaatgactatgcgcttagttaaagttgaatctgggctatg 995 |||||| |||| ||| ||| |||||||||||| | |||||||| Sbjct: 17174 accaaggatgaaactgcacttggttaaagttgaagccgggctatg 17218
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 228 bits (115), Expect = 4e-56 Identities = 172/191 (90%) Strand = Plus / Plus Query: 129 aggcaagtggaagatgccgttgtcggtggcgcggaagcagcaggcggtgctcgctaacgt 188 ||||||||||||||||||| |||||||||||||||||||||||| | | | || ||||| Sbjct: 12773631 aggcaagtggaagatgccggcgtcggtggcgcggaagcagcaggcagcgatggcgaacgt 12773690 Query: 189 cgaccaggtcaccggcgagaggatccccaagagcttcgtcttctcgcgcggcaagctccc 248 ||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || Sbjct: 12773691 ggaccaggtcactggcgacaagatccccaagagcttcgtcttctcccgcggcaagctgcc 12773750 Query: 249 ctccacgctccgtcacctccagcaggacctccgcaagctcatgctcccctacaccgccct 308 |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 12773751 ctccacgctccgccatctccagcaggatctccgcaaggtcatgctcccctacaccgccct 12773810 Query: 309 caagctcaagg 319 || ||||||| Sbjct: 12773811 gaatctcaagg 12773821 Score = 174 bits (88), Expect = 5e-40 Identities = 115/124 (92%) Strand = Plus / Plus Query: 707 atttccggcattactccatcaagctccagcctgttggggtgagccgcaagattagaaaac 766 ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| | Sbjct: 12774527 atttcaggcattactccatcaagctccagcctgttggggtcacccgcaagattagaaagc 12774586 Query: 767 tcatgcagaacaatcaagtgccagacctaagggaccttaaagatgttagtgattatgtga 826 ||||||||||||| ||||||||||||||||||||||| || || ||||| |||||||||| Sbjct: 12774587 tcatgcagaacaaccaagtgccagacctaagggacctgaacgacgttagcgattatgtga 12774646 Query: 827 caaa 830 |||| Sbjct: 12774647 caaa 12774650 Score = 125 bits (63), Expect = 4e-25 Identities = 192/235 (81%) Strand = Plus / Plus Query: 317 aggagaagaagaggaacaacctcaaggacttcgtcaacgttgccagcccattgggtgtta 376 |||||||||| |||||||||||||||| ||||||||||| || |||| ||||| || | Sbjct: 12773932 aggagaagaaacggaacaacctcaaggatttcgtcaacgtctccggcccgttgggcgtga 12773991 Query: 377 cgcatttcctgatcctctcgaacccaaagagcttaccgcacctgcgcttcgccaagtcac 436 |||||||| | |||||| ||||||| ||||||| |||||| ||||| | || ||| | | Sbjct: 12773992 cgcatttcttcatcctcacgaaccccaagagctcgccgcacttgcgcatggcgaagacgc 12774051 Query: 437 cgcagggtccaacctacacttgtcagattttagagtacgctcttgcagctgacatcgcaa 496 |||||||||| |||||||| | |||||| ||||| ||||| || || ||||| || | Sbjct: 12774052 cgcagggtcctacctacacatttcagataaaggagtatgctctcgccgccgacattgcga 12774111 Query: 497 actcccaaaagcggccaaggtgtcctgcagagatattcaaaaactcgcctctggt 551 |||| || ||||| || |||||||| ||||||||||||| || || |||||||| Sbjct: 12774112 actcacagaagcgaccgaggtgtcccccagagatattcaagaattcacctctggt 12774166 Score = 121 bits (61), Expect = 6e-24 Identities = 139/165 (84%) Strand = Plus / Plus Query: 831 agctggatatggatcagaaagtgaaccagacgatgaagcagcgactgtaagtctagcaag 890 ||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 12775601 agctggatacggatcagaaagtgaagtggatgatgaagcagcaactgtaagtctagccag 12775660 Query: 891 tgatatagataaattgaacagagcatcccgaaaaagtgctgtcaggctccaagagatcgg 950 |||| | || ||||| ||| |||||||| ||||||| || |||| ||||| |||||||| Sbjct: 12775661 tgatgttgacaaattaaaccgagcatccagaaaaagcgccatcagactccaggagatcgg 12775720 Query: 951 accaagaatgactatgcgcttagttaaagttgaatctgggctatg 995 |||||| |||| ||| ||| |||||||||||| | |||||||| Sbjct: 12775721 accaaggatgaaactgcacttggttaaagttgaagccgggctatg 12775765
>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence Length = 121026 Score = 52.0 bits (26), Expect = 0.005 Identities = 38/42 (90%) Strand = Plus / Minus Query: 831 agctggatatggatcagaaagtgaaccagacgatgaagcagc 872 |||||| |||||||||||||||||| |||| ||||| ||||| Sbjct: 118222 agctggttatggatcagaaagtgaagcagatgatgaggcagc 118181 Score = 46.1 bits (23), Expect = 0.30 Identities = 38/43 (88%) Strand = Plus / Minus Query: 921 aaaaagtgctgtcaggctccaagagatcggaccaagaatgact 963 ||||||||||||||| || |||||||| || ||||| |||||| Sbjct: 118132 aaaaagtgctgtcagacttcaagagattggtccaaggatgact 118090
>ref|NM_203247.1| Arabidopsis thaliana unknown protein (AT5G61770) mRNA, complete cds Length = 1251 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 231 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 282
>ref|NM_125571.3| Arabidopsis thaliana unknown protein (AT5G61770) mRNA, complete cds Length = 1246 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 258 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 309
>ref|NM_180911.1| Arabidopsis thaliana unknown protein (AT5G61770) mRNA, complete cds Length = 1338 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 258 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 309
>gb|AF361824.1| Arabidopsis thaliana AT5g61770/mac9_70 mRNA, complete cds Length = 1307 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 258 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 309
>gb|AY069910.1| Arabidopsis thaliana AT5g61770/mac9_70 mRNA, complete cds Length = 1338 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 258 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 309
>gb|AY056064.1| Arabidopsis thaliana At1g06730/F4H5_22 mRNA, complete cds Length = 1038 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 169 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 220
>emb|BX833250.1|CNS09Z92 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1250 Score = 48.1 bits (24), Expect = 0.076 Identities = 45/52 (86%) Strand = Plus / Plus Query: 283 aagctcatgctcccctacaccgccctcaagctcaaggagaagaagaggaaca 334 ||||||||||| |||||||| || |||| || |||||||||||| |||||| Sbjct: 231 aagctcatgcttccctacactgctctcagtcttaaggagaagaagcggaaca 282
>gb|AC115818.9| Mus musculus chromosome 1, clone RP23-433A12, complete sequence Length = 186895 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Plus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 45620 aaggggaaagggaagggaaaagg 45642
>gb|AC123597.9| Mus musculus chromosome 8, clone RP23-134A7, complete sequence Length = 172297 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 93359 aaggggaaagggaagggaaaagg 93337
>gb|AC117249.3| Mus musculus BAC clone RP24-347M10 from 8, complete sequence Length = 177116 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 38736 aaggggaaagggaagggaaaagg 38714
>gb|AC157787.6| Mus musculus chromosome 1, clone RP23-158A6, complete sequence Length = 199981 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 112455 aaggggaaagggaagggaaaagg 112433
>gb|AC155262.2| Mus musculus BAC clone RP23-452K4 from chromosome 13, complete sequence Length = 168429 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Plus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 102981 aaggggaaagggaagggaaaagg 103003
>emb|AL512589.4| Mouse DNA sequence from clone RP23-431C3 on chromosome 2, complete sequence Length = 170352 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 160480 aaggggaaagggaagggaaaagg 160458
>gb|AC122771.10| Mus musculus chromosome 1, clone RP24-156G20, complete sequence Length = 207446 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Plus Query: 103 aaggggaaagggaagggaaaagg 125 ||||||||||||||||||||||| Sbjct: 18675 aaggggaaagggaagggaaaagg 18697
>gb|AC191352.3| Gallus gallus BAC clone CH261-84D19 from chromosome z, complete sequence Length = 222192 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 aggggaaagggaagggaaaagg 125 |||||||||||||||||||||| Sbjct: 161698 aggggaaagggaagggaaaagg 161719
>ref|XM_001189635.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC594594 (LOC594594), mRNA Length = 1908 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 ccgtcacctccagcaggacctc 279 |||||||||||||||||||||| Sbjct: 1042 ccgtcacctccagcaggacctc 1021
>ref|XM_794028.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC594594 (LOC594594), mRNA Length = 1908 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 ccgtcacctccagcaggacctc 279 |||||||||||||||||||||| Sbjct: 1042 ccgtcacctccagcaggacctc 1021
>gb|AF485133.1| Begonia sp. Forrest 127 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 754 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 560 gtggtttcaatggcctcggcga 581 |||||||||||||||||||||| Sbjct: 622 gtggtttcaatggcctcggcga 643
>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence Length = 207418 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1042 aaggagggacaagaggaagaag 1063 |||||||||||||||||||||| Sbjct: 7683 aaggagggacaagaggaagaag 7662
>ref|XM_868874.1| PREDICTED: Bos taurus similar to M-phase phosphoprotein 10 (LOC616764), mRNA Length = 2146 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1078 gaggatatgatggagctggagg 1099 |||||||||||||||||||||| Sbjct: 403 gaggatatgatggagctggagg 424
>gb|AY489026.1| Rattus norvegicus Na-driven Cl-HCO3 exchanger NDCBE1-C mRNA, complete cds Length = 3464 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 gagaagaagaggaacaacctca 340 |||||||||||||||||||||| Sbjct: 791 gagaagaagaggaacaacctca 812
>ref|NM_199497.1| Rattus norvegicus solute carrier family 4 (anion exchanger), member 8 (Slc4a8), mRNA gb|AY489025.1| Rattus norvegicus Na-driven Cl-HCO3 exchanger NDCBE1-B mRNA, complete cds Length = 3626 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 gagaagaagaggaacaacctca 340 |||||||||||||||||||||| Sbjct: 791 gagaagaagaggaacaacctca 812
>gb|AY489024.1| Rattus norvegicus Na-driven Cl-HCO3 exchanger NDCBE1-A mRNA, complete cds Length = 3536 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 gagaagaagaggaacaacctca 340 |||||||||||||||||||||| Sbjct: 791 gagaagaagaggaacaacctca 812
>gb|AC117118.4| Rattus norvegicus 1 BAC CH230-161O8 (Children's Hospital Oakland Research Institute) complete sequence Length = 216036 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 104 aggggaaagggaagggaaaagg 125 |||||||||||||||||||||| Sbjct: 117496 aggggaaagggaagggaaaagg 117475
>gb|AC158975.9| Mus musculus chromosome 18, clone RP24-192J22, complete sequence Length = 178651 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1042 aaggagggacaagaggaagaag 1063 |||||||||||||||||||||| Sbjct: 26926 aaggagggacaagaggaagaag 26947
>gb|AC112200.3| Homo sapiens chromosome 5 clone RP11-54F2, complete sequence Length = 107502 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 103 aaggggaaagggaagggaaaag 124 |||||||||||||||||||||| Sbjct: 16643 aaggggaaagggaagggaaaag 16664
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 186 cgtcgaccaggtcaccggcgag 207 |||||||||||||||||||||| Sbjct: 1642435 cgtcgaccaggtcaccggcgag 1642456
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 186 cgtcgaccaggtcaccggcgag 207 |||||||||||||||||||||| Sbjct: 41935 cgtcgaccaggtcaccggcgag 41956
>gb|AC109182.14| Mus musculus chromosome 7, clone RP23-223O9, complete sequence Length = 191479 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1049 gacaagaggaagaagagatagaagatgctg 1078 |||||||||||| ||||| ||||||||||| Sbjct: 51610 gacaagaggaagcagagaaagaagatgctg 51639
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1161 atgattgccaaaaatgtgaagcagc 1185 ||||| ||||||||||||||||||| Sbjct: 12034400 atgatcgccaaaaatgtgaagcagc 12034376
>ref|XM_001055437.1| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ34960 (predicted) (RGD1560439_predicted), mRNA Length = 2580 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1043 aggagggacaagaggaagaagagat 1067 |||||||| |||||||||||||||| Sbjct: 1302 aggagggagaagaggaagaagagat 1326
>ref|XM_228962.4| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ34960 (predicted) (RGD1560439_predicted), mRNA Length = 2580 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1043 aggagggacaagaggaagaagagat 1067 |||||||| |||||||||||||||| Sbjct: 1302 aggagggagaagaggaagaagagat 1326
>gb|AC102672.13| Mus musculus chromosome 14, clone RP23-181E7, complete sequence Length = 208396 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aaggggaaagggaagggaaaa 123 ||||||||||||||||||||| Sbjct: 158545 aaggggaaagggaagggaaaa 158525
>gb|AF492458.1| Lactobacillus crispatus ABC transporter gene, partial cds; DEAD-box helicase, ammonium transporter, nitroreductase, acetyltransferase, phosphoesterase, truncated PTS EIIC-like protein, aggregation promoting factor (apf), insertion sequence IS1202-Lbc1 transposase, phosphoglycerate mutase, phosphoglycerate mutase, glycerophosphoryldiester phosphodiesterase, and insertion sequence IS30-like transposase genes, complete cds; and unknown genes Length = 24582 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 964 atgcgcttagttaaagttgaa 984 ||||||||||||||||||||| Sbjct: 22186 atgcgcttagttaaagttgaa 22206
>gb|BC060891.1| Danio rerio myeloid ecotropic viral integration 1, mRNA (cDNA clone MGC:73029 IMAGE:4145050), complete cds Length = 2185 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 caaggagaagaagaggaacaa 335 ||||||||||||||||||||| Sbjct: 952 caaggagaagaagaggaacaa 972
>gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, complete sequence Length = 221821 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1045 gagggacaagaggaagaagag 1065 ||||||||||||||||||||| Sbjct: 178107 gagggacaagaggaagaagag 178127
>gb|AC132573.2| Mus musculus BAC clone RP24-410H24 from chromosome 15, complete sequence Length = 194219 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1045 gagggacaagaggaagaagagatagaaga 1073 |||| ||||||||||||||||| |||||| Sbjct: 7225 gaggtacaagaggaagaagagaaagaaga 7197
>gb|AC125541.4| Mus musculus BAC clone RP23-237I10 from chromosome 15, complete sequence Length = 215447 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1045 gagggacaagaggaagaagagatagaaga 1073 |||| ||||||||||||||||| |||||| Sbjct: 126795 gaggtacaagaggaagaagagaaagaaga 126767
>gb|AC125359.4| Mus musculus BAC clone RP23-102I17 from chromosome 14, complete sequence Length = 192163 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aaggggaaagggaagggaaaa 123 ||||||||||||||||||||| Sbjct: 6900 aaggggaaagggaagggaaaa 6880
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 cgttgtcggtggcgcggaagc 166 ||||||||||||||||||||| Sbjct: 999 cgttgtcggtggcgcggaagc 979
>ref|NM_144408.1| Drosophila melanogaster CG18788-RA (CG18788), mRNA Length = 1765 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1161 atgattgccaaaaatgtgaagcagc 1185 ||||| ||||||||||||||||||| Sbjct: 133 atgatcgccaaaaatgtgaagcagc 109
>gb|AY113330.1| Drosophila melanogaster AT29337 full insert cDNA Length = 1857 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1161 atgattgccaaaaatgtgaagcagc 1185 ||||| ||||||||||||||||||| Sbjct: 133 atgatcgccaaaaatgtgaagcagc 109
>gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, complete sequence Length = 166120 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1126 agatgagcttgagaggtgctg 1146 ||||||||||||||||||||| Sbjct: 20682 agatgagcttgagaggtgctg 20662
>gb|AC148715.1| Macaca mulatta Major Histocompatibility Complex BAC MMU487N12, complete sequence Length = 153422 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 879 aagtctagcaagtgatataga 899 ||||||||||||||||||||| Sbjct: 54189 aagtctagcaagtgatataga 54169 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 879 aagtctagcaagtgatataga 899 ||||||||||||||||||||| Sbjct: 122945 aagtctagcaagtgatataga 122925
>gb|AC148712.1| Macaca mulatta Major Histocompatibility Complex BAC MMU429H11, complete sequence Length = 155789 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 879 aagtctagcaagtgatataga 899 ||||||||||||||||||||| Sbjct: 17376 aagtctagcaagtgatataga 17356
>gb|AC148699.1| Macaca mulatta Major Histocompatibility Complex BAC MMU274L13, complete sequence Length = 210164 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 879 aagtctagcaagtgatataga 899 ||||||||||||||||||||| Sbjct: 168610 aagtctagcaagtgatataga 168590
>gb|AC016398.6| Homo sapiens chromosome 10 clone RP11-561G1, complete sequence Length = 158817 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1171 aaaatgtgaagcagctgctgt 1191 ||||||||||||||||||||| Sbjct: 32716 aaaatgtgaagcagctgctgt 32696
>emb|CR926469.19| Zebrafish DNA sequence from clone DKEY-196J8 in linkage group 13, complete sequence Length = 104871 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 caaggagaagaagaggaacaa 335 ||||||||||||||||||||| Sbjct: 28243 caaggagaagaagaggaacaa 28223
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 879 aagtctagcaagtgatataga 899 ||||||||||||||||||||| Sbjct: 956534 aagtctagcaagtgatataga 956554
>emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on chromosome Xq24-25 Contains part of the GRIA3 gene for glutamate receptor, ionotrophic, AMPA 3, complete sequence Length = 126474 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 ggacaagaggaagaagagata 1068 ||||||||||||||||||||| Sbjct: 29994 ggacaagaggaagaagagata 30014
>emb|AL513533.15| Human DNA sequence from clone RP11-341B24 on chromosome 10 Contains the 3' end of the LIPA gene for lipase A lysosomal acid cholesterol esterase (Wolman disease), a novel zinc finger pseudogene and the CH25 gene for cholesterol 25-hydroxylase, complete sequence Length = 148151 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 acctacacttgtcagatttta 468 ||||||||||||||||||||| Sbjct: 23939 acctacacttgtcagatttta 23959
>emb|AL359979.10| Human DNA sequence from clone RP11-239E10 on chromosome 1 Contains the 5' end of the TLR5 gene for toll-like receptor 5, two novel genes, the gene for a novel protein (FLJ10052) and a CpG island, complete sequence Length = 181466 Score = 42.1 bits (21), Expect = 4.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 1029 agaagaagatgtgaaggagggacaagaggaagaagagatagaaga 1073 ||||||||| | | |||||| | |||||||||||||| ||||||| Sbjct: 86938 agaagaagaggaggaggaggaagaagaggaagaagaggtagaaga 86894
>ref|NM_131893.1| Danio rerio myeloid ecotropic viral integration 1 (meis1), mRNA gb|AF375871.1|AF375871 Danio rerio transcription factor Meis1.1 (meis1.1) mRNA, complete cds, alternatively spliced Length = 2269 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 caaggagaagaagaggaacaa 335 ||||||||||||||||||||| Sbjct: 1199 caaggagaagaagaggaacaa 1219
>gb|AC011065.6| Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone BACR37P12, complete sequence Length = 181103 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1161 atgattgccaaaaatgtgaagcagc 1185 ||||| ||||||||||||||||||| Sbjct: 175290 atgatcgccaaaaatgtgaagcagc 175266
>gb|AC092364.3| Homo sapiens chromosome 19 clone RP11-420K14, complete sequence Length = 170470 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 758 ttagaaaactcatgcagaaca 778 ||||||||||||||||||||| Sbjct: 119604 ttagaaaactcatgcagaaca 119624
>gb|AC011066.5|AC011066 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone BACR02B06, complete sequence Length = 174314 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1161 atgattgccaaaaatgtgaagcagc 1185 ||||| ||||||||||||||||||| Sbjct: 25302 atgatcgccaaaaatgtgaagcagc 25278
>gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosome 7, complete sequence Length = 181146 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1045 gagggacaagaggaagaagag 1065 ||||||||||||||||||||| Sbjct: 141111 gagggacaagaggaagaagag 141131
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 cgtcgaccaggtcaccggcga 206 ||||||||||||||||||||| Sbjct: 715477 cgtcgaccaggtcaccggcga 715497
>gb|AC091522.23| Mus musculus strain C57BL/6J chromosome 10 clone rp23-199g2, complete sequence Length = 214798 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1041 gaaggagggacaagaggaagaagag 1065 |||||||| |||||||||||||||| Sbjct: 200148 gaaggaggaacaagaggaagaagag 200172
>gb|AC005384.2|AC005384 b326h7, complete sequence Length = 178292 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1126 agatgagcttgagaggtgctg 1146 ||||||||||||||||||||| Sbjct: 55807 agatgagcttgagaggtgctg 55827
>gb|AC153569.4| Mus musculus 10 BAC RP23-225D5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 193135 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1041 gaaggagggacaagaggaagaagag 1065 |||||||| |||||||||||||||| Sbjct: 85378 gaaggaggaacaagaggaagaagag 85402
>gb|AC007198.6|AC007198 Homo sapiens, clone 18_A_13, complete sequence Length = 166977 Score = 42.1 bits (21), Expect = 4.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1029 agaagaagatgtgaaggagggacaagaggaagaagagatagaaga 1073 ||||||||| | | |||||| | |||||||||||||| ||||||| Sbjct: 65441 agaagaagaagaggaggaggaagaagaggaagaagaggtagaaga 65485
>emb|AL136001.6|CNS01DVR Human chromosome 14 DNA sequence BAC R-865F7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185967 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 ggggaaagggaagggaaaagg 125 ||||||||||||||||||||| Sbjct: 127892 ggggaaagggaagggaaaagg 127872
>gb|AC161488.7| Mus musculus chromosome 7, clone RP24-300N16, complete sequence Length = 183220 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1045 gagggacaagaggaagaagagatagaaga 1073 |||||| ||||||||||||||| |||||| Sbjct: 35718 gagggagaagaggaagaagagagagaaga 35746 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 204,221,127 Number of extensions: 11181164 Number of successful extensions: 267363 Number of sequences better than 10.0: 71 Number of HSP's gapped: 267357 Number of HSP's successfully gapped: 86 Length of query: 1242 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1219 Effective length of database: 18,503,978,556 Effective search space: 22556349859764 Effective search space used: 22556349859764 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)