ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf66k10 |
|---|---|
| Clone Library Name | barley_pub |
>O22152:YAB1_ARATH Axial regulator YABBY1 - Arabidopsis thaliana (Mouse-ear cress)| Length = 229 Score = 172 bits (435), Expect = 3e-42 Identities = 97/191 (50%), Positives = 118/191 (61%), Gaps = 11/191 (5%) Frame = +3 Query: 258 APAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQA 437 +P++ +CYV CNFC T+LAV+VP S+F VTVRCG CTNLLSV++R V LPA+ Q Sbjct: 20 SPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYV---LPASNQL 76 Query: 438 Q----ESSLGKPSGINGFIRDHS-------VYNHPEFGXXXXXXXKFQLPTMMFSSQNDL 584 Q S P I +RD + HP +P+ M Q Sbjct: 77 QLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMN---------DIPSFMDLHQQHE 127 Query: 585 LHEQTLHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHF 764 + + RPPEKRQRVPSAYNRFIKEEI+RIKA NPDISHREAFS AAKNWAH+P+IHF Sbjct: 128 IPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 187 Query: 765 GLNPGSDGGKR 797 GL P + K+ Sbjct: 188 GLVPDNQPVKK 198
>Q8GW46:YAB5_ARATH Axial regulator YABBY5 - Arabidopsis thaliana (Mouse-ear cress)| Length = 164 Score = 171 bits (434), Expect = 4e-42 Identities = 95/183 (51%), Positives = 123/183 (67%) Frame = +3 Query: 255 IAPAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQ 434 + EQ+CY+ CNFCN +LAV+VP +S+F++VTVRCGHCTNL SV++ AA Q Sbjct: 5 VMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMA--------AALQ 56 Query: 435 AQESSLGKPSGINGFIRDHSVYNHPEFGXXXXXXXKFQLPTMMFSSQNDLLHEQTLHARP 614 SL +P+ + Y PE+G K +P+ + + + EQ + RP Sbjct: 57 ----SLSRPNF------QATNYAVPEYGSSSRSHTK--IPSRISTRT---ITEQRIVNRP 101 Query: 615 PEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLNPGSDGGK 794 PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL S+ Sbjct: 102 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQA 161 Query: 795 RLA 803 ++A Sbjct: 162 KIA 164
>Q9XFB0:YAB2_ARATH Axial regulator YABBY2 - Arabidopsis thaliana (Mouse-ear cress)| Length = 184 Score = 165 bits (418), Expect = 3e-40 Identities = 94/194 (48%), Positives = 116/194 (59%) Frame = +3 Query: 264 AEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQAQE 443 +E+VCYVHC+FC T+LAVSVP S+F +VTVRCGHCTNLLS+++ +H Sbjct: 7 SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQT--------- 57 Query: 444 SSLGKPSGINGFIRDHSVYNHPEFGXXXXXXXKFQLPTMMFSSQNDLLHEQTLHARPPEK 623 I+ ++ H H T S D + RPPEK Sbjct: 58 ----SAPPIHQDLQPHR--QHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEK 111 Query: 624 RQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLNPGSDGGKRLA 803 RQRVPSAYNRFIKEEI+RIKA NP+ISHREAFSTAAKNWAH+P+IHFGL DG K+ Sbjct: 112 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLK--LDGNKKGK 169 Query: 804 VDDAAPAAKKIQGF 845 D + A +K G+ Sbjct: 170 QLDQSVAGQKSNGY 183
>Q9XFB1:YAB3_ARATH Axial regulator YABBY3 - Arabidopsis thaliana (Mouse-ear cress)| Length = 240 Score = 165 bits (417), Expect = 3e-40 Identities = 93/190 (48%), Positives = 116/190 (61%), Gaps = 22/190 (11%) Frame = +3 Query: 267 EQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQV----------HSP 416 +Q+CYVHC+FC+TVLAVSVP +S+F VTVRCGHC+NLLSV++ + HS Sbjct: 23 DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF 82 Query: 417 LPAAAQAQESSL-------GKPSGINGFIRDHSVYNHPEFGXXXXXXXKFQLPTMMFSSQ 575 LP +L G+ +N + H+ +HP + M + Sbjct: 83 LPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPN-----------EHLVMATRNG 131 Query: 576 NDLLHEQTLHA-----RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNW 740 + H Q + RPPEKRQRVPSAYNRFIKEEI+RIKA NPDISHREAFS AAKNW Sbjct: 132 RSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNW 191 Query: 741 AHYPNIHFGL 770 AH+P+IHFGL Sbjct: 192 AHFPHIHFGL 201
>Q7XIM7:YAB1_ORYSJ Protein YABBY - Oryza sativa subsp. japonica (Rice)| Length = 169 Score = 164 bits (415), Expect = 6e-40 Identities = 88/180 (48%), Positives = 106/180 (58%), Gaps = 4/180 (2%) Frame = +3 Query: 264 AEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQAQE 443 +E VCYV+CN+CNT+L V+VP N +N+VTVRCGHCT +LS+ L +P A Q Sbjct: 7 SEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDL-----APFHQARTVQ- 60 Query: 444 SSLGKPSGINGFIRDHSVYNHP----EFGXXXXXXXKFQLPTMMFSSQNDLLHEQTLHAR 611 DH V N FG + T M+ +Q R Sbjct: 61 --------------DHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTS--QQQVSPIR 104 Query: 612 PPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLNPGSDGG 791 PPEKRQRVPSAYNRFIKEEI+RIK +NP+ISHREAFS AAKNWAH P +HFGL+ GG Sbjct: 105 PPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGG 164
>Q9LDT3:YAB4_ARATH Axial regulator YABBY4 - Arabidopsis thaliana (Mouse-ear cress)| Length = 231 Score = 137 bits (345), Expect = 8e-32 Identities = 78/171 (45%), Positives = 99/171 (57%), Gaps = 7/171 (4%) Frame = +3 Query: 270 QVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQAQ--- 440 Q+C+V C FC T+L VSVP S+ VVTVRCGHCT+LLSV+L PL A Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79 Query: 441 ESSLGKPSGINGFIRDHSVYNHPEFGXXXXXXXKFQLPTMMFSSQN----DLLHEQTLHA 608 E+ + + +G + N K PT + SS + D+ + Sbjct: 80 ETGKEEVAATDGVEEEAWKVNQE----------KENSPTTLVSSSDNEDEDVSRVYQVVN 129 Query: 609 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIH 761 +PPEKRQR PSAYN FIKEEIRR+KA NP ++H+EAFS AAKNWAH+P H Sbjct: 130 KPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>Q76EJ0:YABDL_ORYSJ Protein DROOPING LEAF - Oryza sativa subsp. japonica (Rice)| Length = 194 Score = 123 bits (309), Expect = 1e-27 Identities = 70/163 (42%), Positives = 90/163 (55%) Frame = +3 Query: 255 IAPAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQ 434 ++P+E +CYV C +CNTVLAV VP + + VTV+CGHC NL +S R + PL Sbjct: 4 VSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPL----- 58 Query: 435 AQESSLGKPSGINGFIRDHSVYNHPEFGXXXXXXXKFQLPTMMFSSQNDLLHEQTLHARP 614 S P G P G LP ++ + N+ +P Sbjct: 59 ---SPTDHPLG-------------PFQGPCTDCRRNQPLP-LVSPTSNEGSPRAPFVVKP 101 Query: 615 PEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWA 743 PEK+ R+PSAYNRF++EEI+RIKA PDI HREAFS AAKNWA Sbjct: 102 PEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>Q8L925:CRC_ARATH Protein CRABS CLAW - Arabidopsis thaliana (Mouse-ear cress)| Length = 181 Score = 114 bits (285), Expect = 7e-25 Identities = 65/173 (37%), Positives = 86/173 (49%), Gaps = 1/173 (0%) Frame = +3 Query: 264 AEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSPLPAAAQAQE 443 AE + YV C+ CNT+LAV +P M + VTV+CGHC NL ++ + + Q Q Sbjct: 18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQMQS 77 Query: 444 SSLGKPSGINGFIRDHSVYNHPEFGXXXXXXXKFQLPTMMFSSQNDLLHEQTLHARPPEK 623 FG + SS +PPEK Sbjct: 78 -----------------------FGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEK 114 Query: 624 RQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHY-PNIHFGLNPG 779 +QR+PSAYNRF+++EI+RIK+ NP+I HREAFS AAKNWA Y PN + G Sbjct: 115 KQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSPTSITSG 167
>Q0II87:TFAM_BOVIN Transcription factor A, mitochondrial precursor - Bos taurus| (Bovine) Length = 246 Score = 33.9 bits (76), Expect = 1.2 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 639 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPN 755 ++Y RF KE++ KA NPD + E AK W P+ Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPD 93
>Q4H0T5:TFAM_PRECR Transcription factor A, mitochondrial precursor - Presbytis| cristata (Silvered langur) Length = 246 Score = 33.5 bits (75), Expect = 1.6 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 639 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPN 755 S+Y RF KE++ KA NPD E AK W P+ Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELPD 93
>Q00059:TFAM_HUMAN Transcription factor A, mitochondrial precursor - Homo sapiens| (Human) Length = 246 Score = 33.1 bits (74), Expect = 2.1 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 639 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPN 755 S+Y RF KE++ KA NPD E A+ W P+ Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 93
>Q5D144:TFAM_PIG Transcription factor A, mitochondrial precursor - Sus scrofa (Pig)| Length = 246 Score = 32.3 bits (72), Expect = 3.5 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 639 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPN 755 ++Y RF KE++ KA NPD + E A+ W P+ Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPD 93
>Q9Z651:CCMA_PANCI Cytochrome c biogenesis ATP-binding export protein ccmA - Pantoea| citrea Length = 208 Score = 32.3 bits (72), Expect = 3.5 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 242 VVGPDRTGRTSLLRPLQLLQHRTRGECPWEQHVQRRDGPVW 364 + GP+ G+TSLLR L L GE W Q R +W Sbjct: 32 IEGPNGAGKTSLLRILAGLSRPESGEILWNQTAVGRQRDIW 72
>Q9HC84:MUC5B_HUMAN Mucin-5B precursor - Homo sapiens (Human)| Length = 5703 Score = 32.0 bits (71), Expect = 4.6 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 679 SKQTTP--TLATGKPSALPQRTGHITQTSTSG*TPGATVARGSPSTMP 816 S+ TTP T++T PS+ P+ T +T+ T GAT + +PS+ P Sbjct: 1996 SQTTTPMATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTP 2043 Score = 32.0 bits (71), Expect = 4.6 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 679 SKQTTP--TLATGKPSALPQRTGHITQTSTSG*TPGATVARGSPSTMP 816 S+ TTP T++T PS+ P+ T +T+ T GAT + +PS+ P Sbjct: 3752 SQTTTPMATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTP 3799 Score = 32.0 bits (71), Expect = 4.6 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 679 SKQTTPT--LATGKPSALPQRTGHITQTSTSG*TPGATVARGSPSTMP 816 S+ TTPT ++T PS+ P+ T +T+ T GAT + +PS+ P Sbjct: 4479 SQTTTPTATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTP 4526
>Q96T54:KCNKH_HUMAN Potassium channel subfamily K member 17 - Homo sapiens (Human)| Length = 332 Score = 31.2 bits (69), Expect = 7.9 Identities = 28/101 (27%), Positives = 42/101 (41%) Frame = -3 Query: 712 SLWLMSGLFALILRISSLMNLLYAEGTRCLFSGGRACSVCSCSRSFCEENIIVGSWNLED 533 SLW++ G+ L L I +++ L G VCSC +E+ SW Sbjct: 246 SLWILFGMAWLALIIKLILSQLETPGR-----------VCSCCHHSSKEDFKSQSWRQGP 294 Query: 532 DVEEEPNSG*L*TL*SRMKPLMPLGLPRLLSWACAAAGSGE 410 D E E +S P P+G+ + L + AAG G+ Sbjct: 295 DREPESHSP-----QQGCYPEGPMGIIQHLEPSAHAAGCGK 330
>Q62635:MUC2_RAT Mucin-2 precursor - Rattus norvegicus (Rat)| Length = 1513 Score = 31.2 bits (69), Expect = 7.9 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +1 Query: 679 SKQTTPTLATGKPSALPQRTGHITQTSTSG*TPGATVARGSPSTMP 816 S T+PT +T P+ P + TST+ TP T + SP+ P Sbjct: 1435 SPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSP 1480 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 175,550,093 Number of extensions: 3647551 Number of successful extensions: 12294 Number of sequences better than 10.0: 16 Number of HSP's gapped: 12279 Number of HSP's successfully gapped: 20 Length of query: 366 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 251 Effective length of database: 69,142,514 Effective search space: 17354771014 Effective search space used: 17354771014 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
