ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf66k07 |
|---|---|
| Clone Library Name | barley_pub |
>Q4PB56:NMT_USTMA Glycylpeptide N-tetradecanoyltransferase - Ustilago maydis (Smut| fungus) Length = 706 Score = 34.3 bits (77), Expect = 0.33 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 144 SSGSLTVAAGHCGCSPCSSMRARALALAEASWSTRSIVVVRSCDLVE 4 SSG G S SS RA ALA +A+W S+ + SC+L + Sbjct: 521 SSGVCDAETGRASTSQPSSERAVALAAGKAAWQCNSLTNLTSCELAD 567
>P93746:EC1_ARATH EC protein homolog 1 - Arabidopsis thaliana (Mouse-ear cress)| Length = 84 Score = 33.1 bits (74), Expect = 0.74 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = -2 Query: 222 NQFSGRAALSPPGAASRCRLPAPCPPSSGSLTVAAG-HCGCSPCSSMRARALALAE 58 N G + P G + RCR+ G + G HCGC+PC+ + + A+ Sbjct: 14 NDSCGCPSPCPGGNSCRCRMREASAGDQGHMVCPCGEHCGCNPCNCPKTQTQTSAK 69
>Q32S24:COBA2_BOVIN Collagen alpha-2(XI) chain precursor - Bos taurus (Bovine)| Length = 1736 Score = 32.0 bits (71), Expect = 1.6 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = +3 Query: 6 QPNHTIERQQSSECSRKPQPEPELVHA*KSMESNHSDLQPPSGYPTTAGTVPVGGNGSPR 185 QP+H +R + R +P+ + A +S ES + D +PP T GT P + +P Sbjct: 239 QPSHRTQRSPKQQPPRLHRPQNQEPQA-QSTESLYYDYEPPYYDVMTTGTTPDYQDPTPG 297 Query: 186 REE 194 EE Sbjct: 298 EEE 300
>Q05925:HME1_HUMAN Homeobox protein engrailed-1 - Homo sapiens (Human)| Length = 392 Score = 32.0 bits (71), Expect = 1.7 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Frame = -2 Query: 228 RGNQFSGRAALSP-----PGAASR-CRLPAPCPPSSGSLTVAAGHCGCSPCSSMRARALA 67 RG +GR + P PGAAS C A C P GS AAG G S + A A A Sbjct: 146 RGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAG-AGASKAGNPAAAAAA 204 Query: 66 LAEASWSTRSIVVVRSCD 13 A A + + + D Sbjct: 205 AAAAVAAAAAAAAAKPSD 222
>Q9HDY3:YK17_SCHPO Membrane protein PB1A10.07c - Schizosaccharomyces pombe (Fission| yeast) Length = 441 Score = 31.6 bits (70), Expect = 2.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 457 TCRTTHSLI*EYNPNTATLQSNETRCTTILIILDTL 350 +C + H I EYNP + QS+ C T +IL L Sbjct: 247 SCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSAL 282
>Q12276:YO227_YEAST Uncharacterized protein YOR227W - Saccharomyces cerevisiae (Baker's| yeast) Length = 1246 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +3 Query: 3 TQPNHTIERQQSSECSRKPQPEPELVHA*KSMESNHSDLQPPSGYPTTAGTVPVGGNGS 179 T P+H +ER SS+ K E +++ S + P+ PTTA + P G+ Sbjct: 181 TTPSHVVERPLSSQNDHKKSTEL------PPIDTRQSKISTPTSTPTTASSKPSSSGGN 233
>Q96II8:LRCH3_HUMAN Leucine-rich repeat and calponin homology domain-containing protein| 3 precursor - Homo sapiens (Human) Length = 777 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +3 Query: 60 QPEPELVHA*KSMESN--HSDLQPPSGYPTTAGTVPVGGNGSPRREE 194 +PE L A E+N H+ PPS PTT T + G S +REE Sbjct: 608 RPESFLFRAGVRAETNKGHASPLPPSAAPTTDSTDSITGQNSRQREE 654
>P13942:COBA2_HUMAN Collagen alpha-2(XI) chain precursor - Homo sapiens (Human)| Length = 1736 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%) Frame = +3 Query: 24 ERQQSSECSRKPQPEPELVHA*KSME-------SNHSDLQPPSGYPTTAGTVPVGGNGSP 182 + QQ R PQ +P +H ++ E S + D +PP T GT P + +P Sbjct: 237 QNQQPHRAQRSPQQQPSRLHRPQNQEPQSQPTESLYYDYEPPYYDVMTTGTTPDYQDPTP 296 Query: 183 RREE 194 EE Sbjct: 297 GEEE 300
>P34504:YMV2_CAEEL Uncharacterized protein K04H4.2 precursor - Caenorhabditis elegans| Length = 1446 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = -2 Query: 237 HMHRGNQFSGRAALSPPGAASRCRLPAPCPPSSGSLTVA-AGHCGCSP 97 +++ N+F G ++SP +RC+L C + L++ AG C CSP Sbjct: 1363 NINNNNRF-GSLSMSPRPIGARCQLDGECVGQAEGLSMCHAGVCQCSP 1409
>P26010:ITB7_HUMAN Integrin beta-7 precursor - Homo sapiens (Human)| Length = 798 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = -2 Query: 204 AALSPPGAASRCRLPAPCPPSSGSLTVAAGHCGCSPCS 91 A LS P S CR P +G L GHC C CS Sbjct: 516 AELSSPDLESGCR----APNGTGPLCSGKGHCQCGRCS 549
>Q03828:EVX2_HUMAN Homeobox even-skipped homolog protein 2 - Homo sapiens (Human)| Length = 476 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -2 Query: 213 SGRAALSPPGAASRCRLPAPCPPSSGSLTVAAGHCGCSPCSSMRARALALAEAS 52 S AA + AA+ A PPS GS C C C S ++ A A A A+ Sbjct: 358 SAAAAAAAAAAAASSAAAAGAPPSGGSAP-----CSCLSCHSSQSAAAAAAAAA 406
>Q10449:MU157_SCHPO Meiotically up-regulated gene 157 protein - Schizosaccharomyces| pombe (Fission yeast) Length = 509 Score = 29.6 bits (65), Expect = 8.2 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -1 Query: 220 PVF-RPRCLVSSRRGEPLPPTGTVPAVVG*PDGGCRSLWLLSMLFYACTS 74 PV+ R ++ S G P G V + +G P G R++W +S++ A TS Sbjct: 393 PVYVNTRKMILSSEGNPYYLKGKVISGIGGPHIGLRNVWPMSLIVQALTS 442
>Q28739:BPI_RABIT Bactericidal permeability-increasing protein - Oryctolagus| cuniculus (Rabbit) Length = 445 Score = 29.6 bits (65), Expect = 8.2 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = -2 Query: 210 GRAALSPPGAASRCRLPAPCPPSSGSLTVAAGHCGCSPCSSMRARALALAEASW 49 G+ LS G + L P+SG TV CS CSS RA ++ASW Sbjct: 92 GKFDLSVEGVSISADLKLGSVPASGRATVT-----CSSCSSNINRARLRSQASW 140 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 102,859,984 Number of extensions: 2284835 Number of successful extensions: 7237 Number of sequences better than 10.0: 13 Number of HSP's gapped: 7224 Number of HSP's successfully gapped: 13 Length of query: 194 Length of database: 100,686,439 Length adjustment: 107 Effective length of query: 87 Effective length of database: 71,336,874 Effective search space: 6206308038 Effective search space used: 6206308038 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
