| Clone Name | FLbaf69i19 |
|---|---|
| Clone Library Name | barley_pub |
>Q04870:T2FA_XENLA Transcription initiation factor IIF subunit alpha - Xenopus laevis| (African clawed frog) Length = 524 Score = 42.7 bits (99), Expect = 0.003 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Frame = +3 Query: 459 DTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVESDTKTSSIKDET 638 ++ P P+P +G+ ST A+ SK ++ K + T Sbjct: 389 NSRPGTPSPDTGNTSSTLRAAASKLEQSKRGTVSNTP---------AAKRLKMEAGPQNT 439 Query: 639 PASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSRLRGPEDKN 809 S P P++ S S+ +TE+ +R L P+TT+DL+ +F K+ L + N Sbjct: 440 SGKSTPQPQSGKSTPSSGDIQLTEEAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQTVN 498 Query: 810 AFAEILKKISKIQK 851 A+ILK+++ +K Sbjct: 499 VLAQILKRLNPDRK 512
>Q5EA53:T2FA_BOVIN Transcription initiation factor IIF subunit alpha - Bos taurus| (Bovine) Length = 517 Score = 40.8 bits (94), Expect = 0.012 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Frame = +3 Query: 459 DTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVESDTKTSSIKDET 638 ++ P P+ +G ST A+ SK ++ + DT S+ + Sbjct: 384 NSRPGTPSTEAGSTSSTLRAAASKLEQGKRTSETPAAKR-------LRLDTGPQSLSGK- 435 Query: 639 PASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSRLRGPEDKN 809 S P P++ S S+ VTED +R L P+TT+DL+ +F K+ L + N Sbjct: 436 ---STPQPQSGKSTPSSGDVQVTEDAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQTVN 491 Query: 810 AFAEILKKISKIQK 851 A+ILK+++ +K Sbjct: 492 VLAQILKRLNPERK 505
>P35269:T2FA_HUMAN Transcription initiation factor IIF subunit alpha - Homo sapiens| (Human) Length = 517 Score = 37.7 bits (86), Expect = 0.10 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Frame = +3 Query: 459 DTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVESDTKTSSIKDET 638 ++ P P+ G ST A+ SK ++ + DT S+ ++ Sbjct: 384 NSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAAKR-------LRLDTGPQSLSGKS 436 Query: 639 ---PASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSRLRGPE 800 P S K TP S +V VTED +R L P+TT+DL+ +F K+ L + Sbjct: 437 TPQPPSGKTTPN------SGDVQ-VTEDAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQ 488 Query: 801 DKNAFAEILKKISKIQK 851 N A+ILK+++ +K Sbjct: 489 TVNVLAQILKRLNPERK 505
>Q6AY96:T2FA_RAT Transcription initiation factor IIF subunit alpha - Rattus| norvegicus (Rat) Length = 508 Score = 37.4 bits (85), Expect = 0.13 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%) Frame = +3 Query: 633 ETPASSK------PTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSR 785 ETPA+ + P + S S+ VTED +R L P+TT+DL+ +F K+ Sbjct: 416 ETPAAKRLRMDTGPQSLSGKSTPSSGDVQVTEDAVRRYLTR-KPMTTKDLLKKFQTKKTG 474 Query: 786 LRGPEDKNAFAEILKKISKIQKTNG 860 L + N A+ILK+++ +K G Sbjct: 475 LSSEQTVNVLAQILKRLNPERKMIG 499
>Q3THK3:T2FA_MOUSE Transcription initiation factor IIF subunit alpha - Mus musculus| (Mouse) Length = 508 Score = 37.4 bits (85), Expect = 0.13 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%) Frame = +3 Query: 633 ETPASSK------PTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSR 785 ETPA+ + P + S S+ VTED +R L P+TT+DL+ +F K+ Sbjct: 416 ETPAAKRLRMDTGPQSLSGKSTPSSGDVQVTEDAVRRYLTR-KPMTTKDLLKKFQTKKTG 474 Query: 786 LRGPEDKNAFAEILKKISKIQKTNG 860 L + N A+ILK+++ +K G Sbjct: 475 LSSEQTVNVLAQILKRLNPERKMIG 499
>P40317:SOK1_YEAST Protein SOK1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 901 Score = 33.9 bits (76), Expect = 1.5 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 435 DQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKR 539 DQP+ T+ + P PSS ++ S P A+ SKQ+R Sbjct: 2 DQPRTHSGPTTASNPAPSSTNSSSAPSATNSKQER 36
>Q8NX66:ISDB_STAAW Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain MW2) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>Q6GA86:ISDB_STAAS Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain MSSA476) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>Q7A656:ISDB_STAAN Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain N315) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>Q99UX5:ISDB_STAAM Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain Mu50 / ATCC 700699) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>Q5HGV5:ISDB_STAAC Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain COL) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>Q2FZF0:ISDB_STAA8 Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain NCTC 8325) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>Q2FHV2:ISDB_STAA3 Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain USA300) Length = 645 Score = 33.5 bits (75), Expect = 1.9 Identities = 30/114 (26%), Positives = 45/114 (39%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPTPS P K QK+ E+ Sbjct: 467 QQDNSAKKEATPATPSKPTPS--------PVEKESQKQDSQKDDNKQLPSVEK-----EN 513 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KPT S + V+ + + TT+D+V Sbjct: 514 DASSESGKDKTPA-TKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVV 566
>P08640:MUC1_YEAST Mucin-like protein 1 precursor - Saccharomyces cerevisiae (Baker's| yeast) Length = 1367 Score = 33.1 bits (74), Expect = 2.5 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Frame = +3 Query: 432 TDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVESDT 611 T + PV T P+ T S A P+S + + S T Sbjct: 699 TTESSSAPVPT-PSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTT 757 Query: 612 KTSSIKDETPASSK------PTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSR 773 ++SS TP+SS P P +S ++ +PV T +VAPV T S Sbjct: 758 ESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSVAPVPTPSSSSN 817 Query: 774 FKS 782 S Sbjct: 818 ITS 820 Score = 31.2 bits (69), Expect = 9.6 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 7/122 (5%) Frame = +3 Query: 411 PVLAPKQ-TDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXX 587 PV P T + PV T P+ T S A + P+S + + Sbjct: 580 PVPTPSSSTTESSSAPVPT-PSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSSAPV 638 Query: 588 XXXVESDTKTSSIKDETPASSK------PTPKACASLKSANVSPVTEDEIRTVLLAVAPV 749 S T++SS TP+SS P P +S ++ +PVT T + APV Sbjct: 639 PTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSS---TTESSSAPV 695 Query: 750 TT 755 T+ Sbjct: 696 TS 697 Score = 31.2 bits (69), Expect = 9.6 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 7/144 (4%) Frame = +3 Query: 411 PVLAPKQ-TDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXX 587 PV P T + PV T P+ T S A P+S + + Sbjct: 706 PVPTPSSSTTESSSAPVPT-PSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPV 764 Query: 588 XXXVESDTKTSSIKDETPASSK------PTPKACASLKSANVSPVTEDEIRTVLLAVAPV 749 S T++SS TP+SS P P +S ++V+PV + + + AP Sbjct: 765 PTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSVAPVPTPSSSSNITSSAPS 824 Query: 750 TTQDLVSRFKSRLRGPEDKNAFAE 821 +T S S + P ++ E Sbjct: 825 STPFSSSTESSSVPVPTPSSSTTE 848
>P04929:HRPX_PLALO Histidine-rich glycoprotein precursor - Plasmodium lophurae| Length = 351 Score = 33.1 bits (74), Expect = 2.5 Identities = 17/68 (25%), Positives = 26/68 (38%) Frame = -1 Query: 207 YPQPHHHR*MFLHVPSHRLSQCHHPNQNLDLFHLPHRHPCPF*RAQAYLYERLPLLHSPH 28 + + HHH H P H HHP ++ + H H H P PH Sbjct: 58 HEEHHHHHPEEHHEPHHEEHHHHHPEEHHEPHHEEHHHHHP----------------HPH 101 Query: 27 LYQNYYPP 4 + +++PP Sbjct: 102 HHHHHHPP 109
>Q2YX96:ISDB_STAAB Iron-regulated surface determinant protein B precursor -| Staphylococcus aureus (strain bovine RF122) Length = 629 Score = 32.7 bits (73), Expect = 3.3 Identities = 29/114 (25%), Positives = 44/114 (38%) Frame = +3 Query: 426 KQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVES 605 +Q + K E +P+KPT TPP K QK+ E+ Sbjct: 451 QQDNSAKKETTPATPSKPT--------TPPVEKESQKQDSQKDDNKQSPSVEK-----EN 497 Query: 606 DTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLV 767 D + S KD+TPA +KP S + V+ + + TT+D+V Sbjct: 498 DASSESGKDKTPA-TKPAKGEVESSSTTPTKVVSTTQNAAKPTTASSETTKDVV 550
>Q64762:FIB2_ADEG1 Fiber protein 2 - Avian adenovirus gal1 (strain Phelps) (FAdV-1)| (Fowl adenovirus 1) Length = 410 Score = 32.7 bits (73), Expect = 3.3 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -3 Query: 823 ISAKAFLSSGPRSLDLNLDTKSCVVTGATARRTVLISSSVTGDTLALFNEAQAFGVGFDE 644 IS L++ +DLN+D K+ VV G++ + + + G AL + AQ GV DE Sbjct: 101 ISTAGPLTTTANGIDLNIDPKTLVVDGSSGKNVLGVLLKGQG---ALQSSAQGIGVAVDE 157 Query: 643 A 641 + Sbjct: 158 S 158
>Q9UQ35:SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 - Homo sapiens (Human)| Length = 2752 Score = 32.0 bits (71), Expect = 5.7 Identities = 24/101 (23%), Positives = 37/101 (36%) Frame = +3 Query: 423 PKQTDQPKDEPVDTSPAKPTPSSGHARSTPPASKSKQKRXXXXXXXXXXXXXXXXXXXVE 602 P T PK+ + P +PTP+ RS+ +S S Sbjct: 2580 PSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S 2636 Query: 603 SDTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRT 725 S + +SS +P+ +KP P+A S P E R+ Sbjct: 2637 SSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRS 2677
>Q24742:TRX_DROVI Protein trithorax - Drosophila virilis (Fruit fly)| Length = 3828 Score = 31.2 bits (69), Expect = 9.6 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 2/113 (1%) Frame = +3 Query: 477 PTPSSGHARSTPPAS--KSKQKRXXXXXXXXXXXXXXXXXXXVESDTKTSSIKDETPASS 650 P PS+ A P + K+KQ + E++T + KDE PAS+ Sbjct: 942 PVPSTSEAAVAPGKTTRKAKQDKEKARELEAEKPLSPNAKKTTEANTPETQ-KDEQPAST 1000 Query: 651 KPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKN 809 T A +S S S T A D + R + L+GP K+ Sbjct: 1001 TTTVSAASSSTSHTSSAATNSSQLETTEAANASAVPDNLKRQRIDLKGPRVKH 1053
>P46013:KI67_HUMAN Antigen KI-67 - Homo sapiens (Human)| Length = 3256 Score = 31.2 bits (69), Expect = 9.6 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Frame = +3 Query: 612 KTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KS 782 K + +++E A K TP A ++ + + E +I T + PV DL+ K Sbjct: 1882 KKADVEEEFLAFRKLTPSAGKAMHTPKAAVGEEKDINTFV--GTPVEKLDLLGNLPGSKR 1939 Query: 783 RLRGPEDKNAFAEILKKISKIQKTNGHNYVVLREDK 890 R + P++K E L ++ +T GH + +DK Sbjct: 1940 RPQTPKEKAKALEDLAGFKELFQTPGHTEESMTDDK 1975
>Q5M1B9:IF2_STRT1 Translation initiation factor IF-2 - Streptococcus thermophilus| (strain CNRZ 1066) Length = 943 Score = 31.2 bits (69), Expect = 9.6 Identities = 24/75 (32%), Positives = 33/75 (44%) Frame = +3 Query: 597 VESDTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF 776 + S K + KDE SKP PKA + K V P D+ A A T++ V Sbjct: 46 ITSSLKAGTAKDE----SKPAPKATPTPKEEKVEPKV-DKASVAKSAPAKETSKAEVKEA 100 Query: 777 KSRLRGPEDKNAFAE 821 L+ P+ +N AE Sbjct: 101 SVALKKPKSRNFKAE 115
>Q6E2N3:TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 1163 Score = 31.2 bits (69), Expect = 9.7 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +1 Query: 517 HRNPSKRGNQVVMMPNHLVVQLQRKQRWNLIQKHQVSKTRHRLHQNLHQ 663 H +P K Q+ N ++LQ Q+ + QKHQ H+ Q+ HQ Sbjct: 504 HNHPGKHSGQI----NLAQLRLQHMQQAAIAQKHQQQHQHHQQQQHQHQ 548 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 179,749,724 Number of extensions: 3547869 Number of successful extensions: 11417 Number of sequences better than 10.0: 22 Number of HSP's gapped: 11283 Number of HSP's successfully gapped: 24 Length of query: 425 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 309 Effective length of database: 68,868,219 Effective search space: 21280279671 Effective search space used: 21280279671 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)