| Clone Name | FLbaf69i07 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g60950:12003.t05331:unspliced-genomic expressed protein| Length = 1674 Score = 89.5 bits (189), Expect = 2e-17 Identities = 39/52 (75%), Positives = 42/52 (80%) Frame = +1 / +2 Query: 28 PATRVSALEQPPAAEMAVMDTAFKALTAGLGVATLYLAGSFSFNVYRGLAWH 183 PATR + AAEMAV D AFKALTAGLGVATLYLAG+FS NVYRGL+WH Sbjct: 50 PATRERERGEGCAAEMAVADVAFKALTAGLGVATLYLAGTFSVNVYRGLSWH 205 Score = 87.7 bits (185), Expect = 6e-17 Identities = 42/56 (75%), Positives = 44/56 (78%) Frame = -2 / -1 Query: 194 DCSECQARPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAG 27 DCSEC RPR*TL EK PAR*SVATPSPAVSALNA S TAISAA + +LVAG Sbjct: 216 DCSECHERPR*TLTEKVPAR*SVATPSPAVSALNATSATAISAAQPSPLSLSLVAG 49 Score = 44.6 bits (91), Expect = 5e-04 Identities = 17/24 (70%), Positives = 21/24 (87%) Frame = -1 / -3 Query: 183 VPGEAAVDVEGEGAGKVERGHAQP 112 VP EAAVDV+GEG+G+VER H +P Sbjct: 205 VPREAAVDVDGEGSGEVERRHPEP 134
>LOC_Os04g38530:12004.t03424:unspliced-genomic aldose 1-epimerase precursor, putative, expressed| Length = 4882 Score = 34.5 bits (69), Expect = 0.56 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = -2 / +2 Query: 173 RPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAE 42 R R +E+E A ++A P+P + L AV + A ++AGG +AE Sbjct: 92 RERERERERERAVWAMARPAPLLLLLAAVCLVAAASAGGADAAE 223
>LOC_Os11g35510:12011.t03098:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3161 Score = 25.8 bits (50), Expect(2) = 1.1 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -2 / +2 Query: 98 LNAVSITAISAAGGCSSAETLVAGFRRSAW 9 L A +T +AAGGC++ E A + W Sbjct: 1445 LAAAGVTEAAAAGGCTARERWGARGSSARW 1534 Score = 24.9 bits (48), Expect(2) = 1.1 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -1 / +3 Query: 171 AAVDVEGEGAGKVERGHAQP 112 +A +++GEG V GH P Sbjct: 1344 SAAEIDGEGVDGVALGHVNP 1403
>LOC_Os01g71900:12001.t06482:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 2427 Score = 32.7 bits (65), Expect = 2.0 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 / -3 Query: 247 LPSFLLNLRSSPFPFLA 197 LPS LL+ R SPFPF+A Sbjct: 1603 LPSLLLSFRESPFPFMA 1553
>LOC_Os01g70520:12001.t06352:unspliced-genomic beta-glucosidase homolog precursor, putative, expressed| Length = 6107 Score = 32.7 bits (65), Expect = 2.0 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 / -1 Query: 384 DDHSSLCALYFHTFILCTKHKE 449 + H+S+C +YF T I KHKE Sbjct: 4178 EHHNSVCPIYFFTLIFRCKHKE 4113
>LOC_Os06g46240:12006.t04310:unspliced-genomic BTB/POZ domain containing protein, expressed| Length = 10254 Score = 26.3 bits (51), Expect(2) = 3.3 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 / +1 Query: 412 IFTHLYFVPSIRSAGIKNKILVFCM 486 IF+HL + I S+ I N + FCM Sbjct: 2002 IFSHLVILAIIFSSAILNLQMTFCM 2076 Score = 22.6 bits (43), Expect(2) = 3.3 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +3 / +2 Query: 309 WSFAVMLSGTDFRTVPLM*YRFRDLDDHSSLCALY 413 W S +DF *Y FR+L ++ LC Y Sbjct: 1787 WLHLFT*SQSDFVPRQAF*YGFRELYGYTFLCVGY 1891
>LOC_Os04g41100:12004.t03671:unspliced-genomic PITSLRE serine/threonine-protein kinase CDC2L1, putative, expressed| Length = 6277 Score = 31.8 bits (63), Expect = 3.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 / +1 Query: 131 SVATPSPAVSALNAVSITAISAAGGCSSAETLVA 30 + ATP+PA AV+ A AAG C + A Sbjct: 454 NAATPTPAAKLTGAVTAVAAGAAGSCRTGTATAA 555
>LOC_Os05g32320:12005.t02828:unspliced-genomic transporter, folate-biopterin transporter, putative, expressed| Length = 3084 Score = 31.3 bits (62), Expect = 5.2 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -2 / +2 Query: 182 CQARPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAET 39 C++ R P+R S ++P+P+ SA A S T+ SA CS + + Sbjct: 476 CRSSRRPPTSPWSPSRFSASSPTPSPSAATAASPTSPSAVCICSHSHS 619
>LOC_Os03g63650:12003.t05582:unspliced-genomic expressed protein| Length = 2271 Score = 31.3 bits (62), Expect = 5.2 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 / -2 Query: 152 EKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSAW 9 ++ A + A P+P A + TA + + A AG RRS+W Sbjct: 1544 QRAAAAAAAARPAPTGWTTTAAAATAAGSCAAAAGARPTAAGRRRSSW 1401
>LOC_Os03g55560:12003.t04818:unspliced-genomic MAPKKK5, putative, expressed| Length = 7141 Score = 31.3 bits (62), Expect = 5.2 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -2 / +3 Query: 62 GGCSSAETLVAGFRRSAWVP 3 GGC ++ T +G RRS W+P Sbjct: 432 GGCGTSTTSRSGSRRSGWIP 491
>LOC_Os12g08100:12012.t00692:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 3332 Score = 26.3 bits (51), Expect(2) = 5.4 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -2 / -1 Query: 476 TSILFLIPALLMLGTKYKCVKIE 408 T+ L+PAL +LG + +CV I+ Sbjct: 2819 TNSTVLVPALHVLGPRVECVPID 2751 Score = 25.8 bits (50), Expect(2) = 5.4 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -3 / -3 Query: 247 LPSFLLNLRSSPFPFLA 197 LPS LL+ + SPFP ++ Sbjct: 2493 LPSLLLSFQKSPFPVVS 2443
>LOC_Os02g01740:12002.t00074:unspliced-genomic U5 small nuclear ribonucleoprotein 200 kDa helicase, putative,| expressed Length = 7863 Score = 26.7 bits (52), Expect(2) = 6.3 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 / -1 Query: 253 YQTIPIKRICKKSHL 297 YQ +PI++IC + HL Sbjct: 3867 YQIVPIEQICSRVHL 3823 Score = 26.3 bits (51), Expect(2) = 6.3 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 / -3 Query: 310 GHSRLCFLGLIFGQFL 357 G + LCF+ L+FGQ L Sbjct: 1972 GDNYLCFINLLFGQVL 1925
>LOC_Os05g49530:12005.t04386:unspliced-genomic F-box domain containing protein| Length = 1123 Score = 25.8 bits (50), Expect(2) = 6.7 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 / +3 Query: 355 GTVRKSVPESITANDHSSSKGEISCRS 275 G +S P + TA+ ++S+GE CR+ Sbjct: 480 GRFARSSPSAATASTAAASRGEGRCRA 560 Score = 24.4 bits (47), Expect(2) = 6.7 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = -2 / +3 Query: 86 SITAISAAGGCSSAETLVAGFRRSAW 9 S T+ A CS+ G RRS W Sbjct: 612 SPTSCCATNSCSARLAAATGSRRSTW 689
>LOC_Os05g43490:12005.t03840:unspliced-genomic F-box domain containing protein, expressed| Length = 3581 Score = 30.9 bits (61), Expect = 7.1 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = -2 / +3 Query: 131 SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSAWVP 3 S A SP A A + + S CSS+ T A RRSA P Sbjct: 132 STAVGSPPPPAAAATTTSTASPTRSCSSSSTASATSRRSAAAP 260
>LOC_Os04g40560:12004.t03618:unspliced-genomic nucleotide binding protein, putative, expressed| Length = 1742 Score = 30.9 bits (61), Expect = 7.1 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -2 / +2 Query: 143 PAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSA 12 PA +TPSP+ +A + A +AA C S T A + RSA Sbjct: 1010 PATRRRSTPSPSGAAARCSTPAATTAAS*CGSGRTARATWSRSA 1141
>LOC_Os01g64250:12001.t05793:unspliced-genomic hemerythrin family protein, expressed| Length = 4413 Score = 30.9 bits (61), Expect = 7.1 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +2 / -2 Query: 476 FSVCLFPRALYALRFAKKKK 535 FS+C F + LY + FAKKKK Sbjct: 2147 FSMCTFFKLLYGVFFAKKKK 2088
>LOC_Os02g36414:12002.t03278:unspliced-genomic sugar transport protein 5, putative, expressed| Length = 7360 Score = 30.9 bits (61), Expect = 7.2 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -1 / -3 Query: 180 PGEAAVDVEGEGAGKVERG 124 PG+ A D GE AG+VERG Sbjct: 5522 PGDVAGDEAGENAGEVERG 5466
>LOC_Os09g13670:12009.t01156:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class, expressed| Length = 3333 Score = 26.3 bits (51), Expect(2) = 9.7 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 / -1 Query: 476 TSILFLIPALLMLGTKYKCVKIE 408 T+ L+ ALL+LG++ +CV I+ Sbjct: 2820 TNSAVLVRALLVLGSRVECVPID 2752 Score = 24.9 bits (48), Expect(2) = 9.7 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -3 / -3 Query: 247 LPSFLLNLRSSPFPFLA 197 LPS LL+ R PFP ++ Sbjct: 2494 LPSLLLSFREFPFPVVS 2444
>LOC_Os02g57080:12002.t05280:unspliced-genomic ATP binding protein, putative, expressed| Length = 7037 Score = 30.4 bits (60), Expect = 9.8 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 / +2 Query: 390 HSSLCALYFHTFILCTKHKE 449 HS C L FHT LCTK K+ Sbjct: 2696 HS*CCHLSFHTHDLCTKQKK 2755
>LOC_Os11g31960:12011.t02793:unspliced-genomic expressed protein| Length = 8091 Score = 30.4 bits (60), Expect = 9.8 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +1 / +1 Query: 1 GGTHADRRNPATRVSALEQPPAAEMAVMDTAFKALTAGLG 120 GG D P R ++ E PAA + DTA + L G G Sbjct: 382 GGGGGDAPPPPVRPASAEGKPAAAVVEEDTALQLLARGRG 501
>LOC_Os01g68160:12001.t06172:unspliced-genomic histone deacetylase 2b, putative, expressed| Length = 17658 Score = 30.4 bits (60), Expect = 9.8 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 / +2 Query: 4 GTHADRRNPATRVSALEQPP 63 GT AD R PA+ + LEQPP Sbjct: 1358 GTIADARRPASLLPCLEQPP 1417
>LOC_Os01g21940:12001.t01931:unspliced-genomic WD-40 repeat protein, putative, expressed| Length = 6266 Score = 30.4 bits (60), Expect = 9.8 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = +1 / -1 Query: 268 IKRICKKSHLLMMSGHSRLCFLGLI 342 IKR+ +K+HL +M SR+CFL ++ Sbjct: 1388 IKRLQQKNHLCLM**SSRICFLFIL 1314 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 163,310,549 Number of extensions: 2245225 Number of successful extensions: 9364 Number of sequences better than 10.0: 22 Length of query: 179 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 131 Effective length of database: 52,912,542 Effective search space: 6931543002 Effective search space used: 6931543002 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)