ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf69i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os03g60950:12003.t05331:unspliced-genomic expressed protein 90 2e-17
2LOC_Os04g38530:12004.t03424:unspliced-genomic aldose 1-epime... 35 0.56
3LOC_Os11g35510:12011.t03098:unspliced-genomic retrotransposo... 26 1.1
4LOC_Os01g71900:12001.t06482:unspliced-genomic transposon pro... 33 2.0
5LOC_Os01g70520:12001.t06352:unspliced-genomic beta-glucosida... 33 2.0
6LOC_Os06g46240:12006.t04310:unspliced-genomic BTB/POZ domain... 26 3.3
7LOC_Os04g41100:12004.t03671:unspliced-genomic PITSLRE serine... 32 3.8
8LOC_Os05g32320:12005.t02828:unspliced-genomic transporter, f... 31 5.2
9LOC_Os03g63650:12003.t05582:unspliced-genomic expressed protein 31 5.2
10LOC_Os03g55560:12003.t04818:unspliced-genomic MAPKKK5, putat... 31 5.2
11LOC_Os12g08100:12012.t00692:unspliced-genomic transposon pro... 26 5.4
12LOC_Os02g01740:12002.t00074:unspliced-genomic U5 small nucle... 27 6.3
13LOC_Os05g49530:12005.t04386:unspliced-genomic F-box domain c... 26 6.7
14LOC_Os05g43490:12005.t03840:unspliced-genomic F-box domain c... 31 7.1
15LOC_Os04g40560:12004.t03618:unspliced-genomic nucleotide bin... 31 7.1
16LOC_Os01g64250:12001.t05793:unspliced-genomic hemerythrin fa... 31 7.1
17LOC_Os02g36414:12002.t03278:unspliced-genomic sugar transpor... 31 7.2
18LOC_Os09g13670:12009.t01156:unspliced-genomic transposon pro... 26 9.7
19LOC_Os02g57080:12002.t05280:unspliced-genomic ATP binding pr... 30 9.8
20LOC_Os11g31960:12011.t02793:unspliced-genomic expressed protein 30 9.8
21LOC_Os01g68160:12001.t06172:unspliced-genomic histone deacet... 30 9.8
22LOC_Os01g21940:12001.t01931:unspliced-genomic WD-40 repeat p... 30 9.8

>LOC_Os03g60950:12003.t05331:unspliced-genomic expressed protein|
          Length = 1674
 Score = 89.5 bits (189), Expect = 2e-17
 Identities = 39/52 (75%), Positives = 42/52 (80%)
 Frame = +1 / +2

                                                               
Query: 28  PATRVSALEQPPAAEMAVMDTAFKALTAGLGVATLYLAGSFSFNVYRGLAWH 183
           PATR     +  AAEMAV D AFKALTAGLGVATLYLAG+FS NVYRGL+WH
Sbjct: 50  PATRERERGEGCAAEMAVADVAFKALTAGLGVATLYLAGTFSVNVYRGLSWH 205



 Score = 87.7 bits (185), Expect = 6e-17
 Identities = 42/56 (75%), Positives = 44/56 (78%)
 Frame = -2 / -1

                                                                   
Query: 194 DCSECQARPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAG 27
           DCSEC  RPR*TL EK PAR*SVATPSPAVSALNA S TAISAA     + +LVAG
Sbjct: 216 DCSECHERPR*TLTEKVPAR*SVATPSPAVSALNATSATAISAAQPSPLSLSLVAG 49



 Score = 44.6 bits (91), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1 / -3

                                   
Query: 183 VPGEAAVDVEGEGAGKVERGHAQP 112
           VP EAAVDV+GEG+G+VER H +P
Sbjct: 205 VPREAAVDVDGEGSGEVERRHPEP 134



to top

>LOC_Os04g38530:12004.t03424:unspliced-genomic aldose 1-epimerase precursor, putative, expressed|
          Length = 4882

 Score = 34.5 bits (69), Expect = 0.56
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2 / +2

                                                       
Query: 173 RPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAE 42
           R R   +E+E A  ++A P+P +  L AV + A ++AGG  +AE
Sbjct: 92  RERERERERERAVWAMARPAPLLLLLAAVCLVAAASAGGADAAE 223



to top

>LOC_Os11g35510:12011.t03098:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 3161

 Score = 25.8 bits (50), Expect(2) = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2 / +2

                                          
Query: 98   LNAVSITAISAAGGCSSAETLVAGFRRSAW 9
            L A  +T  +AAGGC++ E   A    + W
Sbjct: 1445 LAAAGVTEAAAAGGCTARERWGARGSSARW 1534



 Score = 24.9 bits (48), Expect(2) = 1.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1 / +3

                                
Query: 171  AAVDVEGEGAGKVERGHAQP 112
            +A +++GEG   V  GH  P
Sbjct: 1344 SAAEIDGEGVDGVALGHVNP 1403



to top

>LOC_Os01g71900:12001.t06482:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 2427

 Score = 32.7 bits (65), Expect = 2.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3 / -3

                             
Query: 247  LPSFLLNLRSSPFPFLA 197
            LPS LL+ R SPFPF+A
Sbjct: 1603 LPSLLLSFRESPFPFMA 1553



to top

>LOC_Os01g70520:12001.t06352:unspliced-genomic beta-glucosidase homolog precursor, putative, expressed|
          Length = 6107

 Score = 32.7 bits (65), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3 / -1

                                  
Query: 384  DDHSSLCALYFHTFILCTKHKE 449
            + H+S+C +YF T I   KHKE
Sbjct: 4178 EHHNSVCPIYFFTLIFRCKHKE 4113



to top

>LOC_Os06g46240:12006.t04310:unspliced-genomic BTB/POZ domain containing protein, expressed|
          Length = 10254

 Score = 26.3 bits (51), Expect(2) = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1 / +1

                                     
Query: 412  IFTHLYFVPSIRSAGIKNKILVFCM 486
            IF+HL  +  I S+ I N  + FCM
Sbjct: 2002 IFSHLVILAIIFSSAILNLQMTFCM 2076



 Score = 22.6 bits (43), Expect(2) = 3.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3 / +2

                                               
Query: 309  WSFAVMLSGTDFRTVPLM*YRFRDLDDHSSLCALY 413
            W      S +DF      *Y FR+L  ++ LC  Y
Sbjct: 1787 WLHLFT*SQSDFVPRQAF*YGFRELYGYTFLCVGY 1891



to top

>LOC_Os04g41100:12004.t03671:unspliced-genomic PITSLRE serine/threonine-protein kinase CDC2L1, putative, expressed|
          Length = 6277

 Score = 31.8 bits (63), Expect = 3.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2 / +1

                                             
Query: 131 SVATPSPAVSALNAVSITAISAAGGCSSAETLVA 30
           + ATP+PA     AV+  A  AAG C +     A
Sbjct: 454 NAATPTPAAKLTGAVTAVAAGAAGSCRTGTATAA 555



to top

>LOC_Os05g32320:12005.t02828:unspliced-genomic transporter, folate-biopterin transporter, putative, expressed|
          Length = 3084

 Score = 31.3 bits (62), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2 / +2

                                                           
Query: 182 CQARPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAET 39
           C++  R       P+R S ++P+P+ SA  A S T+ SA   CS + +
Sbjct: 476 CRSSRRPPTSPWSPSRFSASSPTPSPSAATAASPTSPSAVCICSHSHS 619



to top

>LOC_Os03g63650:12003.t05582:unspliced-genomic expressed protein|
          Length = 2271

 Score = 31.3 bits (62), Expect = 5.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2 / -2

                                                            
Query: 152  EKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSAW 9
            ++  A  + A P+P      A + TA  +    + A    AG RRS+W
Sbjct: 1544 QRAAAAAAAARPAPTGWTTTAAAATAAGSCAAAAGARPTAAGRRRSSW 1401



to top

>LOC_Os03g55560:12003.t04818:unspliced-genomic MAPKKK5, putative, expressed|
          Length = 7141

 Score = 31.3 bits (62), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2 / +3

                               
Query: 62  GGCSSAETLVAGFRRSAWVP 3
           GGC ++ T  +G RRS W+P
Sbjct: 432 GGCGTSTTSRSGSRRSGWIP 491



to top

>LOC_Os12g08100:12012.t00692:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 3332

 Score = 26.3 bits (51), Expect(2) = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2 / -1

                                   
Query: 476  TSILFLIPALLMLGTKYKCVKIE 408
            T+   L+PAL +LG + +CV I+
Sbjct: 2819 TNSTVLVPALHVLGPRVECVPID 2751



 Score = 25.8 bits (50), Expect(2) = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3 / -3

                             
Query: 247  LPSFLLNLRSSPFPFLA 197
            LPS LL+ + SPFP ++
Sbjct: 2493 LPSLLLSFQKSPFPVVS 2443



to top

>LOC_Os02g01740:12002.t00074:unspliced-genomic U5 small nuclear ribonucleoprotein 200 kDa helicase, putative,|
            expressed
          Length = 7863

 Score = 26.7 bits (52), Expect(2) = 6.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1 / -1

                           
Query: 253  YQTIPIKRICKKSHL 297
            YQ +PI++IC + HL
Sbjct: 3867 YQIVPIEQICSRVHL 3823



 Score = 26.3 bits (51), Expect(2) = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1 / -3

                            
Query: 310  GHSRLCFLGLIFGQFL 357
            G + LCF+ L+FGQ L
Sbjct: 1972 GDNYLCFINLLFGQVL 1925



to top

>LOC_Os05g49530:12005.t04386:unspliced-genomic F-box domain containing protein|
          Length = 1123

 Score = 25.8 bits (50), Expect(2) = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3 / +3

                                      
Query: 355 GTVRKSVPESITANDHSSSKGEISCRS 275
           G   +S P + TA+  ++S+GE  CR+
Sbjct: 480 GRFARSSPSAATASTAAASRGEGRCRA 560



 Score = 24.4 bits (47), Expect(2) = 6.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2 / +3

                                     
Query: 86  SITAISAAGGCSSAETLVAGFRRSAW 9
           S T+  A   CS+      G RRS W
Sbjct: 612 SPTSCCATNSCSARLAAATGSRRSTW 689



to top

>LOC_Os05g43490:12005.t03840:unspliced-genomic F-box domain containing protein, expressed|
          Length = 3581

 Score = 30.9 bits (61), Expect = 7.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2 / +3

                                                      
Query: 131 SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSAWVP 3
           S A  SP   A  A + +  S    CSS+ T  A  RRSA  P
Sbjct: 132 STAVGSPPPPAAAATTTSTASPTRSCSSSSTASATSRRSAAAP 260



to top

>LOC_Os04g40560:12004.t03618:unspliced-genomic nucleotide binding protein, putative, expressed|
          Length = 1742

 Score = 30.9 bits (61), Expect = 7.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2 / +2

                                                        
Query: 143  PAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSA 12
            PA    +TPSP+ +A    +  A +AA  C S  T  A + RSA
Sbjct: 1010 PATRRRSTPSPSGAAARCSTPAATTAAS*CGSGRTARATWSRSA 1141



to top

>LOC_Os01g64250:12001.t05793:unspliced-genomic hemerythrin family protein, expressed|
          Length = 4413

 Score = 30.9 bits (61), Expect = 7.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2 / -2

                                
Query: 476  FSVCLFPRALYALRFAKKKK 535
            FS+C F + LY + FAKKKK
Sbjct: 2147 FSMCTFFKLLYGVFFAKKKK 2088



to top

>LOC_Os02g36414:12002.t03278:unspliced-genomic sugar transport protein 5, putative, expressed|
          Length = 7360

 Score = 30.9 bits (61), Expect = 7.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1 / -3

                               
Query: 180  PGEAAVDVEGEGAGKVERG 124
            PG+ A D  GE AG+VERG
Sbjct: 5522 PGDVAGDEAGENAGEVERG 5466



to top

>LOC_Os09g13670:12009.t01156:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class, expressed|
          Length = 3333

 Score = 26.3 bits (51), Expect(2) = 9.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2 / -1

                                   
Query: 476  TSILFLIPALLMLGTKYKCVKIE 408
            T+   L+ ALL+LG++ +CV I+
Sbjct: 2820 TNSAVLVRALLVLGSRVECVPID 2752



 Score = 24.9 bits (48), Expect(2) = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3 / -3

                             
Query: 247  LPSFLLNLRSSPFPFLA 197
            LPS LL+ R  PFP ++
Sbjct: 2494 LPSLLLSFREFPFPVVS 2444



to top

>LOC_Os02g57080:12002.t05280:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 7037

 Score = 30.4 bits (60), Expect = 9.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3 / +2

                                
Query: 390  HSSLCALYFHTFILCTKHKE 449
            HS  C L FHT  LCTK K+
Sbjct: 2696 HS*CCHLSFHTHDLCTKQKK 2755



to top

>LOC_Os11g31960:12011.t02793:unspliced-genomic expressed protein|
          Length = 8091

 Score = 30.4 bits (60), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1 / +1

                                                   
Query: 1   GGTHADRRNPATRVSALEQPPAAEMAVMDTAFKALTAGLG 120
           GG   D   P  R ++ E  PAA +   DTA + L  G G
Sbjct: 382 GGGGGDAPPPPVRPASAEGKPAAAVVEEDTALQLLARGRG 501



to top

>LOC_Os01g68160:12001.t06172:unspliced-genomic histone deacetylase 2b, putative, expressed|
          Length = 17658

 Score = 30.4 bits (60), Expect = 9.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1 / +2

                                
Query: 4    GTHADRRNPATRVSALEQPP 63
            GT AD R PA+ +  LEQPP
Sbjct: 1358 GTIADARRPASLLPCLEQPP 1417



to top

>LOC_Os01g21940:12001.t01931:unspliced-genomic WD-40 repeat protein, putative, expressed|
          Length = 6266

 Score = 30.4 bits (60), Expect = 9.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1 / -1

                                     
Query: 268  IKRICKKSHLLMMSGHSRLCFLGLI 342
            IKR+ +K+HL +M   SR+CFL ++
Sbjct: 1388 IKRLQQKNHLCLM**SSRICFLFIL 1314


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 163,310,549
Number of extensions: 2245225
Number of successful extensions: 9364
Number of sequences better than 10.0: 22
Length of query: 179
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 131
Effective length of database: 52,912,542
Effective search space: 6931543002
Effective search space used: 6931543002
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top