ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf69i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q99NF8:RBP17_MOUSE Ran-binding protein 17 - Mus musculus (Mouse) 32 1.1
2Q9H2T7:RBP17_HUMAN Ran-binding protein 17 - Homo sapiens (Human) 32 1.1
3P67660:YHAJ_ECOLI Uncharacterized HTH-type transcriptional regul... 30 5.3
4P67661:YHAJ_ECO57 Uncharacterized HTH-type transcriptional regul... 30 5.3
5P51826:AFF3_HUMAN AF4/FMR2 family member 3 - Homo sapiens (Human) 30 6.8

>Q99NF8:RBP17_MOUSE Ran-binding protein 17 - Mus musculus (Mouse)|
          Length = 1088
 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 370 LYYIKGTVRKSVPESITANDHSSSKGEISCRSF*LV-LSDTNLP 242
           L Y+ GTV        + ++H +  GE+SCR F L+ L DT LP
Sbjct: 495 LIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTRLP 538



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>Q9H2T7:RBP17_HUMAN Ran-binding protein 17 - Homo sapiens (Human)|
          Length = 1088

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 370 LYYIKGTVRKSVPESITANDHSSSKGEISCRSF*LV-LSDTNLP 242
           L Y+ GTV        + ++H +  GE+SCR F L+ L DT LP
Sbjct: 495 LVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLP 538



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>P67660:YHAJ_ECOLI Uncharacterized HTH-type transcriptional regulator yhaJ -|
           Escherichia coli
          Length = 298

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 19  RRNPATRVSALEQPPAAEMAVMDTAFKALTAGLGVATL 132
           R  P   V  L++ P   ++ ++   +AL AGLGVAT+
Sbjct: 207 RERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATM 244



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>P67661:YHAJ_ECO57 Uncharacterized HTH-type transcriptional regulator yhaJ -|
           Escherichia coli O157:H7
          Length = 298

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 19  RRNPATRVSALEQPPAAEMAVMDTAFKALTAGLGVATL 132
           R  P   V  L++ P   ++ ++   +AL AGLGVAT+
Sbjct: 207 RERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATM 244



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>P51826:AFF3_HUMAN AF4/FMR2 family member 3 - Homo sapiens (Human)|
          Length = 1226

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = -2

Query: 188 SECQARPR*TLKEKEPAR*SVATPSPAVSALNAVSITAISAAGGCSSAETLVAGFRRSA 12
           S C+   R     K P    V   SP  +   AVS  A   A  C+ AE   A  RRSA
Sbjct: 525 STCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPAVPCAPAENAPAPARRSA 583


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 75,413,348
Number of extensions: 1440163
Number of successful extensions: 3183
Number of sequences better than 10.0: 5
Number of HSP's gapped: 3183
Number of HSP's successfully gapped: 5
Length of query: 179
Length of database: 100,686,439
Length adjustment: 106
Effective length of query: 73
Effective length of database: 71,611,169
Effective search space: 5227615337
Effective search space used: 5227615337
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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