ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf69h02 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g08350:12002.t00731:unspliced-genomic expressed protein| Length = 5242 Score = 34.1 bits (68), Expect = 0.43 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = -1 / +2 Query: 200 GTGRRGKRMKHNVTRSSLICIPSCWGWNIGLF 105 G+ R G R+ + +RSS++ +P CW + G++ Sbjct: 590 GSSRSGIRISSSASRSSIVAMPRCWRISRGMW 685
>LOC_Os05g51020:12005.t04532:unspliced-genomic expressed protein| Length = 5201 Score = 28.1 bits (55), Expect(2) = 0.61 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 / +2 Query: 126 GMEHWLVRPNRCWRVITMVAT 64 G EHW +P RC + VAT Sbjct: 464 GYEHWRWQPRRCAAALRCVAT 526 Score = 26.3 bits (51), Expect(2) = 0.61 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -1 / +1 Query: 311 LKAMAHAPHCTLCACTLSQ 255 L +A PHC C CT ++ Sbjct: 229 LNLIAARPHCHYCCCTCAE 285
>LOC_Os02g53860:12002.t04965:unspliced-genomic subtilisin-like protease precursor, putative, expressed| Length = 2841 Score = 32.7 bits (65), Expect = 1.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 / +3 Query: 239 EVKLSSKQEPLGHGTGRRGKRMKH 168 EV+L + P HG GRRG+R +H Sbjct: 870 EVRLLRLRHPRRHGRGRRGRRRRH 941
>LOC_Os11g46110:12011.t04136:unspliced-genomic hypothetical protein| Length = 350 Score = 32.2 bits (64), Expect = 1.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -3 / -3 Query: 135 QLLGMEHWLVRPNRCWRVITMVAT*LVSPNKQIQMPQ 25 Q L +E W +P+ CWR +V L+ P + PQ Sbjct: 285 QALEVEPWQRKPSSCWRKKLLVGHGLIPPRRNPCRPQ 175
>LOC_Os08g01274:12008.t04336:unspliced-genomic expressed protein| Length = 5395 Score = 32.2 bits (64), Expect = 1.5 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 / +3 Query: 114 NVPSPAAGDANQAGPCDVMLHPFASS 191 N+PS A+ N + PCD P+ASS Sbjct: 246 NIPSSASKTLNPSSPCDRPTQPYASS 323
>LOC_Os08g01270:12008.t00027:unspliced-genomic serine/threonine-protein kinase CTR1, putative, expressed| Length = 7401 Score = 32.2 bits (64), Expect = 1.5 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 / -2 Query: 114 NVPSPAAGDANQAGPCDVMLHPFASS 191 N+PS A+ N + PCD P+ASS Sbjct: 2054 NIPSSASKTLNPSSPCDRPTQPYASS 1977
>LOC_Os12g33240:12012.t03016:unspliced-genomic mitochondrial ribosomal protein S10, putative, expressed| Length = 2290 Score = 27.2 bits (53), Expect(2) = 1.7 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -1 / +1 Query: 164 VTRSSLICIPSC 129 VTRS+ IC+PSC Sbjct: 1177 VTRSAYICLPSC 1212 Score = 24.4 bits (47), Expect(2) = 1.7 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -3 / +3 Query: 270 LYFVSVIYKSRSEVIKQARTSGPWHWSKR 184 LYF + VI Q R +G W W+ R Sbjct: 798 LYFCYAVGLLTEVVIVQNRRTGYWVWAGR 884
>LOC_Os12g06550:12012.t00540:unspliced-genomic expressed protein| Length = 3237 Score = 31.8 bits (63), Expect = 2.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 / -2 Query: 95 LLGRTSQCSIPSSWGCKSGWTL 160 ++G SQC+ PSSW K W + Sbjct: 2519 VMGNRSQCASPSSWTSKLSWNV 2454
>LOC_Os09g38110:12009.t03286:unspliced-genomic RING-H2 finger protein ATL2A, putative, expressed| Length = 946 Score = 31.8 bits (63), Expect = 2.1 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 / -1 Query: 178 RLPLRPVPWPRGSCLL 225 RLPL P+ W RG CLL Sbjct: 349 RLPLEPLAWRRGHCLL 302
>LOC_Os03g49150:12003.t04266:unspliced-genomic protein yippee-like, putative, expressed| Length = 3565 Score = 31.8 bits (63), Expect = 2.1 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = -1 / +2 Query: 191 RRGKRMKHNVTRSSLI 144 RRG+RMKHN T SSLI Sbjct: 3245 RRGRRMKHNSTCSSLI 3292
>LOC_Os01g11620:12001.t01031:unspliced-genomic esterase precursor, putative, expressed| Length = 3464 Score = 31.8 bits (63), Expect = 2.1 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -3 / -1 Query: 204 PWHWSKRQTDEA*RHKVQPDLHPQLLGMEHWLV 106 PW W KR+ +E + Q HP L W+V Sbjct: 2018 PWLWRKRKKEEGSTGEGQAGRHPWLRAHHRWVV 1920
>LOC_Os12g42870:12012.t03960:unspliced-genomic GLA1, putative, expressed| Length = 4850 Score = 31.3 bits (62), Expect = 2.9 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 / -3 Query: 245 NHEVKLSSKQEPLGHGTGRRGKRMKHNVTRSSLICIP 135 N + + KQE + H +G+R ++N+T S + IP Sbjct: 2562 NQNISWNYKQEQINHDEHGKGQR*ENNITGRSCLMIP 2452
>LOC_Os06g45340:12006.t04221:unspliced-genomic FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast| precursor, putative, expressed Length = 1385 Score = 31.3 bits (62), Expect = 2.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -1 / +3 Query: 242 HEVKLSSKQEPLGHGTGRRGKRMKHNVTRSSLICIPS 132 +E++ + EP HG+ RR +R + R L +PS Sbjct: 39 NELRQQQRTEPASHGSLRRRRRRRRRRRRHRLAAVPS 149
>LOC_Os05g38390:12005.t03381:unspliced-genomic L-ascorbate oxidase precursor, putative| Length = 1807 Score = 31.3 bits (62), Expect = 2.9 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -1 / -1 Query: 290 PHCTLCACTLSQLYTNHEVKLSSKQEPLGHGTGRRGKRMKHNVTRSS 150 P C C T S NH + S+ + R GK K NVTR++ Sbjct: 625 PVCRACLITASGSALNHSPAVRSRFPSHIKTSDRSGKNQKKNVTRNA 485
>LOC_Os02g45750:12002.t04162:unspliced-genomic protein kinase, putative, expressed| Length = 3602 Score = 31.3 bits (62), Expect = 2.9 Identities = 15/54 (27%), Positives = 21/54 (38%) Frame = -1 / +2 Query: 290 PHCTLCACTLSQLYTNHEVKLSSKQEPLGHGTGRRGKRMKHNVTRSSLICIPSC 129 P C AC S+ H + ++ P T RR R + TRS+ C Sbjct: 89 PRCCCGACARSRPRRGHRARPRPRRRPTRGSTARRTPRTRARPTRSTARASAGC 250
>LOC_Os02g06940:12002.t00591:unspliced-genomic hypothetical protein| Length = 2712 Score = 31.3 bits (62), Expect = 2.9 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = +1 / +2 Query: 46 VW*HKSCCNHGYYSPTSIGTNKPM 117 +W CC+ G++SP ++G+ P+ Sbjct: 1688 LWLGSKCCSSGFFSPLAVGSPLPL 1759
>LOC_Os10g28080:12010.t02163:unspliced-genomic chitinase 1 precursor, putative, expressed| Length = 1176 Score = 30.9 bits (61), Expect = 3.9 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -3 / -1 Query: 303 YGTCTSLYFVCLYFVSVIYKSRSEVIKQARTSGPW 199 Y T F+C YF+S+I R + R+ PW Sbjct: 990 YNTTIISQFICSYFISIITTVRWTISGWRRSPEPW 886
>LOC_Os06g34650:12006.t03162:unspliced-genomic RING-H2 finger protein ATL2L, putative, expressed| Length = 874 Score = 30.9 bits (61), Expect = 3.9 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 / +2 Query: 120 PSPAAGDANQAGPCDVMLHPFASSTSAMAQR 212 P PA+ ++ PC HP SS+SA ++R Sbjct: 179 PLPASSSSSSPPPCASRCHPTTSSSSAPSRR 271
>LOC_Os04g46020:12004.t04134:unspliced-genomic GATA transcription factor 29, putative, expressed| Length = 4303 Score = 30.9 bits (61), Expect = 3.9 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 / +2 Query: 194 GRRGKRMKHNVTRSSLICIPSCWG 123 G+ K K V RSS +C CWG Sbjct: 4109 GKMKKERKMEVIRSSCLCCNQCWG 4180
>LOC_Os02g52580:12002.t04839:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3467 Score = 30.9 bits (61), Expect = 3.9 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 / +3 Query: 184 PLRPVPWPRGSCLL 225 P RP PWP G+CLL Sbjct: 1092 PPRPPPWPGGTCLL 1133 Score = 30.9 bits (61), Expect = 3.9 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 / -3 Query: 184 PLRPVPWPRGSCLL 225 P RP PWP G+CLL Sbjct: 54 PPRPPPWPGGTCLL 13
>LOC_Os01g57790:12001.t05181:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3661 Score = 30.9 bits (61), Expect = 3.9 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 / -3 Query: 184 PLRPVPWPRGSCLL 225 P RP PWP G+CLL Sbjct: 1610 PPRPPPWPGGTCLL 1569
>LOC_Os01g07080:12001.t00588:unspliced-genomic ATP-dependent rRNA helicase spb4, putative, expressed| Length = 3426 Score = 30.9 bits (61), Expect = 3.9 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -1 / -2 Query: 275 CACTLSQLYTNHEVKLSSKQEPLGHGTGRRGKRMKHNVTR 156 C+C+ + L TNH+++ + + L TG R K+ K TR Sbjct: 3365 CSCSFTVLVTNHKIEHTIARAKLATYTG*RKKKAKLLRTR 3246
>LOC_Os05g14170:12005.t01192:unspliced-genomic expressed protein| Length = 9380 Score = 27.6 bits (54), Expect(2) = 4.4 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 / +3 Query: 212 VLACLITSLRDLYITETKYKHTKYNEVHV 298 VL L + DL++ E K + YN+VH+ Sbjct: 4272 VLVALDETRSDLFLIELKGESISYNKVHI 4358 Score = 24.4 bits (47), Expect(2) = 4.4 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = +1 / +1 Query: 169 CFIRLPLRPVPWPRGSCLL 225 C +++ LR W R SCL+ Sbjct: 766 CVVQIALRLCCWLRASCLI 822
>LOC_Os01g52690:12001.t04695:unspliced-genomic DNA-directed RNA polymerase II largest subunit, putative, expressed| Length = 2632 Score = 23.1 bits (44), Expect(3) = 5.4 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -3 / -1 Query: 144 LHPQLLGMEHWLVR 103 LHP L G HW R Sbjct: 898 LHPALSGSCHWTAR 857 Score = 22.1 bits (42), Expect(3) = 5.4 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = -1 / -2 Query: 206 GHGTGRRGKRMKHNVTRSSLIC 141 G TGRRG+R+ +S C Sbjct: 1182 GRATGRRGRRVAWRGRGASARC 1117 Score = 21.7 bits (41), Expect(3) = 5.4 Identities = 7/11 (63%), Positives = 7/11 (63%) Frame = -1 / -1 Query: 56 CHQTNRFKCRS 24 CH T R CRS Sbjct: 484 CHWTERVACRS 452
>LOC_Os07g30510:12007.t02738:unspliced-genomic receptor-like protein kinase, putative| Length = 4054 Score = 30.4 bits (60), Expect = 5.4 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 / +3 Query: 55 HKSCCNHGYYSPTSIGTNKPMFH 123 H++CC HG Y +G N + H Sbjct: 3738 HQTCCRHGSYGRMEVGMNL*IHH 3806
>LOC_Os07g30410:12007.t02729:unspliced-genomic receptor-like protein kinase, putative| Length = 4054 Score = 30.4 bits (60), Expect = 5.4 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 / +3 Query: 55 HKSCCNHGYYSPTSIGTNKPMFH 123 H++CC HG Y +G N + H Sbjct: 3738 HQTCCRHGSYGRMEVGMNL*IHH 3806
>LOC_Os04g57360:12004.t05202:unspliced-genomic expressed protein| Length = 2753 Score = 30.4 bits (60), Expect = 5.4 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -1 / +2 Query: 191 RRGKRMKHNVTRSSLICIPSCWGW 120 RR +R + + R L C P CW W Sbjct: 293 RRSRRRRMLLRRQRLCCRPLCWPW 364
>LOC_Os04g30720:12004.t02758:unspliced-genomic kinesin motor domain containing protein, expressed| Length = 5012 Score = 30.4 bits (60), Expect = 5.4 Identities = 10/34 (29%), Positives = 17/34 (50%) Frame = +2 / +1 Query: 11 ISFWGCGI*ICLFGDTSHVATMVITLQHLLGRTS 112 + ++ CG+ IC+FG HV + L R + Sbjct: 4699 VRWFSCGVCICIFGQRCHVFVLYFFLSSCFSRAN 4800
>LOC_Os03g21664:12003.t005732:unspliced-genomic expressed protein| Length = 1459 Score = 30.4 bits (60), Expect = 5.4 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 / -3 Query: 77 PWLQHDLCHQTNRFKCRSPRTRYVA 3 P LQH L H F C S RT Y++ Sbjct: 977 PLLQHPLVHALPIFNCHSCRTPYIS 903
>LOC_Os02g44750:12002.t04065:unspliced-genomic hypothetical protein| Length = 1910 Score = 30.4 bits (60), Expect = 5.4 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 / +2 Query: 109 KPMFHPQQLGMQIRLDLVTLCFIRLPLRPVPWPRGSCLLDNFTS 240 +P P++ G++ R D R PLR +P+P + + F S Sbjct: 1736 RPNLEPRRRGIRRRRDPPPTLCHRWPLRAIPFPPAAAFIGGFDS 1867
>LOC_Os02g02770:12002.t00176:unspliced-genomic pentatricopeptide, putative, expressed| Length = 2526 Score = 30.4 bits (60), Expect = 5.4 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = -3 / +1 Query: 237 SEVIKQARTSGPWHWSKRQTDEA*RHKVQP 148 + V ++ R+S PW W R+ RH+ +P Sbjct: 16 NRVAREQRSSQPWRWRWRRRSRPRRHRRRP 105
>LOC_Os01g33400:12001.t02907:unspliced-genomic helix-loop-helix DNA-binding domain containing protein| Length = 635 Score = 24.9 bits (48), Expect(2) = 7.1 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -3 / -2 Query: 243 SRSEVIKQARTSGPWHWSKRQT 178 S S ART+ PW W+ T Sbjct: 550 SPSRATVAARTATPWRWNTSST 485 Score = 21.7 bits (41), Expect(2) = 7.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 / -2 Query: 166 TSQGPA*FASPAAGDGTLACSSQ*ML 89 TS GP+ A PAA L SS +L Sbjct: 409 TSAGPSRAARPAAAATALYASSSAVL 332
>LOC_Os10g14210:12010.t01141:unspliced-genomic hypothetical protein| Length = 599 Score = 29.9 bits (59), Expect = 7.4 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 / +1 Query: 147 DLHPQLLGMEHWLVRPNRCWRVITMVAT*LVSPNKQIQM 31 D QL + LVRPN CW V+ + + + N QM Sbjct: 145 DRTAQLRDRPNHLVRPNLCWPVLLRIFSWALVENPSAQM 261
>LOC_Os08g30250:12008.t02778:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 3739 Score = 29.9 bits (59), Expect = 7.4 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +1 / -3 Query: 13 LVLGLRHLNLFVW*HKSCCNHGY 81 L L L + N W H S C+HGY Sbjct: 3692 LALHLHYCNHCPWQHNSLCSHGY 3624
>LOC_Os07g25490:12007.t02246:unspliced-genomic hypothetical protein| Length = 2463 Score = 29.9 bits (59), Expect = 7.4 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -1 / +1 Query: 272 ACTLSQLYTNHEVKLSSKQEPLG 204 +C L +LY HE++L+S+ E LG Sbjct: 2059 SCRLQELYLLHEIELASELELLG 2127
>LOC_Os07g04950:12007.t00380:unspliced-genomic protein app1, putative, expressed| Length = 804 Score = 29.9 bits (59), Expect = 7.4 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = -1 / -3 Query: 284 CTLCACTLSQLYTNHEVKLSSKQEPLGHGTGRRGKRMKH 168 C C+C H +Q LGHG RR +R +H Sbjct: 577 CC*CSCRRRWRQEWHRHGWHRRQRHLGHGRHRRHRRQRH 461
>LOC_Os05g52120:12005.t04637:unspliced-genomic hypothetical protein| Length = 6016 Score = 29.9 bits (59), Expect = 7.4 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 / -1 Query: 185 GKRMKHNVTRSSLICIPSCWGWNIGLF 105 G +M+++V +LI +PSC G +G F Sbjct: 580 GMQMENSVQIKTLITLPSCHGIELGFF 500
>LOC_Os05g52060:12005.t04631:unspliced-genomic hypothetical protein| Length = 8632 Score = 29.9 bits (59), Expect = 7.4 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 / -1 Query: 185 GKRMKHNVTRSSLICIPSCWGWNIGLF 105 G +M+++V +LI +PSC G +G F Sbjct: 1252 GMQMENSVQIKTLISLPSCHGIELGFF 1172
>LOC_Os02g32730:12002.t02916:unspliced-genomic alkaline/neutral invertase, putative, expressed| Length = 4359 Score = 29.9 bits (59), Expect = 7.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 / +1 Query: 92 HLLGRTSQCSIPSSWGCKSGWTL*RYASSVC 184 H+ R + CS P G + W L R+ S+VC Sbjct: 307 HMAVRGASCSHPFELGARWQWGLRRWPSTVC 399
>LOC_Os01g56860:12001.t05096:unspliced-genomic WD-repeat protein 13, putative, expressed| Length = 3067 Score = 29.9 bits (59), Expect = 7.4 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 / -1 Query: 194 GRRGKRMKHNVTRSSLICIPSCW 126 GRRG K N T+S C +CW Sbjct: 556 GRRGAEEKKNETKSRRTCCWTCW 488
>LOC_Os11g17830:12011.t01557:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 9011 Score = 26.7 bits (52), Expect(2) = 7.6 Identities = 13/48 (27%), Positives = 20/48 (41%) Frame = -1 / -1 Query: 320 LNPLKAMAHAPHCTLCACTLSQLYTNHEVKLSSKQEPLGHGTGRRGKR 177 +N MA +P A TL +YT + + + P T G+R Sbjct: 3788 INGRTKMATSPEIGWSAATLEDMYT*RTTRRTQRYSPSNQTTNDDGRR 3645 Score = 24.4 bits (47), Expect(2) = 7.6 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = -1 / -3 Query: 71 LQHDLCHQTNRFKC 30 LQH LC NR KC Sbjct: 1191 LQHTLCSIINRCKC 1150
>LOC_Os01g54580:12001.t04874:unspliced-genomic solute carrier family 35 member C2, putative, expressed| Length = 5260 Score = 24.4 bits (47), Expect(2) = 8.7 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = -3 / +3 Query: 300 GTCTSLYFVCLYFVSVIYKSRSEVIKQARTSGPWH 196 G S Y+ CL + V+ + I++ GP+H Sbjct: 3684 GYTNSFYYTCLLIIFVVSCHIMKCIRKR**QGPFH 3788 Score = 22.1 bits (42), Expect(2) = 8.7 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = -3 / +2 Query: 315 PFEGYGTCTSL 283 PF YG+CT L Sbjct: 3575 PFSWYGSCTHL 3607 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 164,097,034 Number of extensions: 2758755 Number of successful extensions: 13142 Number of sequences better than 10.0: 42 Length of query: 118 Length of database: 55,613,886 Length adjustment: 46 Effective length of query: 72 Effective length of database: 53,025,098 Effective search space: 3817807056 Effective search space used: 3817807056 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
