ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61k22 |
|---|---|
| Clone Library Name | barley_pub |
>O55055:TRDMT_MOUSE tRNA - Mus musculus (Mouse)| Length = 415 Score = 242 bits (618), Expect = 3e-63 Identities = 151/411 (36%), Positives = 218/411 (53%), Gaps = 35/411 (8%) Frame = +2 Query: 44 PWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGN-IQTLAA 220 P RVLE YSGIGGM ++L S + A VV A D+N VAN+VY+HNF H I+ ++ Sbjct: 3 PLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGISL 62 Query: 221 GDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 400 D DK + L+SPPCQP+TR GLQ D R SF+ IL ++ + P+ + +ENV Sbjct: 63 EDFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLENVK 122 Query: 401 GFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPSVNEK 580 GFEVS T L+ + F QEF+LSP G+P SR RYF +AK + FP + + Sbjct: 123 GFEVSSTRGLLIQTIEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPGQI 182 Query: 581 LLRTPTFLTL-------------------------NATTAQNSYDQNEDDLEVVCNPIRN 685 L+ P +T+ +++T + D LE V R Sbjct: 183 LMEFPKIVTVEPQKYAVVEESQPRVQRTGPRICAESSSTQSSGKDTILFKLETVEERDRK 242 Query: 686 FLEAQSIVIGDGECSAIISDFKEAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKR 865 + + + ++ DF E + + +Y +P L+ R+ +DIV P S+R Sbjct: 243 HQQDSDLSV------QMLKDFLE-------DGDTDEYLLPPKLLLRYALLLDIVKPTSRR 289 Query: 866 CCCFTKSYYRYVKGTGSVLATS---------KNVRPVPKENLEISSLNELGLRFFTPREV 1018 CFTK Y Y++GTGSVL + K++ +P E +I+ L+ L LR+FTP+E+ Sbjct: 290 SMCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSLPDLPPEE-KIAKLSMLKLRYFTPKEI 348 Query: 1019 ANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYLFAGA*RSSQS 1171 ANL FP F FP+ ++Q+Y +LGNSL+V VVA LL L G +S+S Sbjct: 349 ANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVLCEGFGNASES 399
>Q4G073:TRDMT_RAT tRNA - Rattus norvegicus (Rat)| Length = 391 Score = 236 bits (602), Expect = 2e-61 Identities = 146/390 (37%), Positives = 212/390 (54%), Gaps = 24/390 (6%) Frame = +2 Query: 44 PWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGN-IQTLAA 220 P RVLE YSGIGGM ++L S V A VV A D++ VAN+VY+HNF H I+ ++ Sbjct: 3 PLRVLELYSGIGGMHHALRESRVPAHVVAAIDVSTVANEVYKHNFPHTHLLAKTIEGISL 62 Query: 221 GDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 400 + DK + L+SPPCQP+TR GLQ +D R SF+ IL ++ + P+ + +ENV Sbjct: 63 EEFDKLSFNMILMSPPCQPFTRIGLQGDMSDRRTNSFLYILDILPRLQKLPKYILLENVK 122 Query: 401 GFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAK--QEPMCFPNPSVN 574 GFEVS T L+ + F QEF+LSP G+P SR RYF +AK EP+CF P Sbjct: 123 GFEVSSTRGLLIQTMEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLCFQAP--G 180 Query: 575 EKLLRTPTFLTLN----ATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIIS 742 + L+ P T+ A + + +V + Q ++ E +A I Sbjct: 181 QILMEFPNSGTVQPQEYAVVEEGKLRVRTREPDVCLDSSSTQCSGQDSILFKHETAADID 240 Query: 743 DFKEAHGCTP--------SETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRY 898 ++ + + Y +P + R+ +DIV P S+R CFTK Y Y Sbjct: 241 RKRQQDSDLSVQMLKGFLEDGDTAQYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSY 300 Query: 899 VKGTGSVLATSKNVR---------PVPKENLEISSLNELGLRFFTPREVANLHSFPSSFR 1051 ++GTGSVL T+++V+ +P E +I+ L+ L LR+FTP+E+ANL FP F Sbjct: 301 IEGTGSVLQTAEDVQIENIYKSLPDLPPEE-KIAKLSMLKLRYFTPKEIANLLGFPPEFG 359 Query: 1052 FPDHIGLRQQYAMLGNSLSVAVVAPLLRYL 1141 FP+ ++Q+Y +LGNSL+V VV+ LL L Sbjct: 360 FPEKTTVKQRYRLLGNSLNVHVVSKLLTVL 389
>Q7YS61:TRDMT_BOVIN tRNA - Bos taurus (Bovine)| Length = 391 Score = 232 bits (591), Expect = 4e-60 Identities = 141/393 (35%), Positives = 213/393 (54%), Gaps = 27/393 (6%) Frame = +2 Query: 44 PWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGN-IQTLAA 220 P R LE YSGIGGM +L S + A+VV A D+N VAN+VY++NF H I+ + Sbjct: 3 PLRALELYSGIGGMHQALRESCIPAQVVAAVDVNTVANEVYKYNFPHTQLLAKTIEGITL 62 Query: 221 GDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 400 + D+ + L+SPPCQP+TR GLQ D R SF+ IL ++ + P+ + +ENV Sbjct: 63 EEFDRLSFNMILMSPPCQPFTRIGLQGDVTDPRTNSFLHILDILPRLQKLPKYILLENVK 122 Query: 401 GFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPSVNEK 580 GFE+S T D L+ + F QEF+LSP G+P SR RYF +AK +P FP + + Sbjct: 123 GFEMSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEPFPFQAPGQV 182 Query: 581 LLRTPTFLTLN----ATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVI------------ 712 L+ P + + A A+ ++ + ++ + ++I+ Sbjct: 183 LMEFPKTESEHPPKYAINAEKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDRKH 242 Query: 713 -GDGECSA-IISDFKEAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKS 886 D + S ++ DF E + + +P + R+ +DIV P S+R CFTK Sbjct: 243 QQDSDLSVRMLKDFLE------DDIDKHSFFLPPKSLLRYALLLDIVKPTSRRSMCFTKG 296 Query: 887 YYRYVKGTGSVLATSKNVR--------PVPKENLEISSLNELGLRFFTPREVANLHSFPS 1042 Y RY++GTGSVL T+++V+ + +I L+ L LRFFTP+E+ANL FP Sbjct: 297 YGRYIEGTGSVLQTTEDVQIENIYKSLTSLSQEEKIMRLSMLQLRFFTPKEIANLLGFPP 356 Query: 1043 SFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYL 1141 F FP+ ++Q+Y +LGNSL+V VVA L++ L Sbjct: 357 EFGFPEMTTVKQRYRLLGNSLNVHVVAKLIKIL 389
>O14717:TRDMT_HUMAN tRNA - Homo sapiens (Human)| Length = 391 Score = 230 bits (587), Expect = 1e-59 Identities = 143/397 (36%), Positives = 211/397 (53%), Gaps = 30/397 (7%) Frame = +2 Query: 44 PWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGN-IQTLAA 220 P RVLE YSG+GGM ++L S + A+VV A D+N VAN+VY++NF H I+ + Sbjct: 3 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 62 Query: 221 GDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 400 + D+ L+SPPCQP+TR G Q D+R SF+ IL ++ + P+ + +ENV Sbjct: 63 EEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVK 122 Query: 401 GFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPSVNEK 580 GFEVS T D L+ + F QEF+LSP G+P SR RYF +AK + P + + Sbjct: 123 GFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQV 182 Query: 581 LLRTPTFLTL----------NATTAQNSYDQNEDDLEVVCN-------PIRNFLEAQSIV 709 L+ P ++ N +N D + C+ + E Sbjct: 183 LMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKN 242 Query: 710 IGDGECSA-IISDFKEAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKS 886 D + S ++ DF E +T Y +P + R+ +DIV P +R CFTK Sbjct: 243 QQDSDLSVKMLKDFLE------DDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKG 296 Query: 887 YYRYVKGTGSVLATSKNVRPVPKENL-----------EISSLNELGLRFFTPREVANLHS 1033 Y Y++GTGSVL T+++V+ EN+ +I+ L L LR+FTP+E+ANL Sbjct: 297 YGSYIEGTGSVLQTAEDVQ---VENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLG 353 Query: 1034 FPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYLF 1144 FP F FP+ I ++Q+Y +LGNSL+V VVA L++ L+ Sbjct: 354 FPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 390
>P40999:PMT1M_SCHPO DNA methyltransferase homolog pmt1 - Schizosaccharomyces pombe| (Fission yeast) Length = 330 Score = 186 bits (473), Expect = 2e-46 Identities = 123/365 (33%), Positives = 184/365 (50%), Gaps = 1/365 (0%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDL 229 RVLE YSGIGGM Y+L + + A++V A DIN AN++Y N +I TL A D Sbjct: 8 RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGKLAKHMDISTLTAKDF 67 Query: 230 DKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFE 409 D + W +SP CQP+TR G +K D R+ +F+ IL+++ +++ P+ + +ENV GFE Sbjct: 68 DAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFE 127 Query: 410 VSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPSVNEKLLR 589 S ++ VL +N E ILSP QF +P SR R++ LA+ L Sbjct: 128 ESKAAEECRKVLRNCGYNLIEGILSPNQFNIPNSRSRWYGLAR---------------LN 172 Query: 590 TPTFLTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIISDFKEAHGCT 769 +++ + Q E +++ IR++LE Sbjct: 173 FKGEWSIDDVFQFSEVAQKEGEVK----RIRDYLEI------------------------ 204 Query: 770 PSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKGTGSVLATSKNVRPV 949 E Y V S++ +WG+ DIV P+S CCCFT+ Y V+G GS+L S + Sbjct: 205 --ERDWSSYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHEN-- 260 Query: 950 PKENLEISSLNELGLRFFTPREVANLHSFPSSFRF-PDHIGLRQQYAMLGNSLSVAVVAP 1126 E E + + L LR+FT REVA L FP S + ++ + Y +LGNS++V VV+ Sbjct: 261 THEQFERNRM-ALQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSY 319 Query: 1127 LLRYL 1141 L+ L Sbjct: 320 LISLL 324
>P05102:MTH1_HAEPH Modification methylase HhaI - Haemophilus parahaemolyticus| Length = 327 Score = 76.6 bits (187), Expect = 3e-13 Identities = 88/366 (24%), Positives = 144/366 (39%), Gaps = 9/366 (2%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRP----CQGNIQTLA 217 R ++ ++G+GG R +L S G AE V + + + A +VYE NF +P Q N +T+ Sbjct: 13 RFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIP 70 Query: 218 AGDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENV 397 D+ PCQ ++ G QK D+R F I +++ P+++F+ENV Sbjct: 71 DHDI-------LCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKK--PKVVFMENV 121 Query: 398 VGFEVSDTHDQLLGVLSTLN---FNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPS 568 F D + L V +T+N ++ +L+ L +G+P R R + + CF N Sbjct: 122 KNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMI------CFRN-D 174 Query: 569 VNEKLLRTPTFLTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIISDF 748 +N + + P LN + +++ D E ++ D Sbjct: 175 LNIQNFQFPKPFELNTF-------------------------VKDLLLPDSEVEHLVIDR 209 Query: 749 KEAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYY--RYVKGTGSVL 922 K+ + TV L ++ + G I S R T S Y TG L Sbjct: 210 KDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIY---STRGIAITLSAYGGGIFAKTGGYL 266 Query: 923 ATSKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNS 1102 K R PRE A + +P S++ H Q Y GNS Sbjct: 267 VNGKT-------------------RKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNS 305 Query: 1103 LSVAVV 1120 + + V+ Sbjct: 306 VVINVL 311
>P25263:MTC1_HERAU Modification methylase HgiCI - Herpetosiphon aurantiacus| (Herpetosiphon giganteus) Length = 420 Score = 73.6 bits (179), Expect = 2e-12 Identities = 106/433 (24%), Positives = 176/433 (40%), Gaps = 65/433 (15%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASS----GVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLA 217 + ++ ++GIGGMR + G+ V + +I+ A Y NF H QG+I Sbjct: 3 KFIDLFAGIGGMRLGFEQAMHELGIETACVLSSEIDKHAQTTYAMNF-HEQSQGDIT--- 58 Query: 218 AGDLDKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVEN 394 + + + +LL+ PCQP++ G QK D R F +I +++ ++ P+ +EN Sbjct: 59 --QIQDFPSFDFLLAGFPCQPFSYAGKQKGFGDTRGTLFFEIERILK--AYRPKGFLLEN 114 Query: 395 VVGFEVSD---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNP 565 V G D T +L L LN+ IL+ F VP +R R + + + P Sbjct: 115 VRGLTTHDKGRTFKTILQKLHELNYGVY-LILNSSNFQVPQNRLRVYIVGLDQSQ--PEL 171 Query: 566 SVNEKLLRTPTFLTLNATTAQNSYDQN---------EDD---------------LEVVCN 673 ++ + T + + + +D N ED L + + Sbjct: 172 TITSHIGATDSHKFKQLSNQASLFDTNKIMLVRDILEDHPLDKYNCSTDFVNKLLAFIGH 231 Query: 674 PI----------RNFLEAQSIVIG-DGEC--------SAIISDFKEAHGCTPSETASQD- 793 PI RN S +G GEC +A+I++ ++ H A QD Sbjct: 232 PIKLNGKRLIDYRNGNSIHSWELGIKGECTSDEIQFMNALIANRRKKH-----FGAHQDG 286 Query: 794 YTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKGTGSVLA-------------TSK 934 + + I+ + D+ +S TK Y + V G + +A S Sbjct: 287 KKLTIEQIKTFFEHDDL---DSIMQSLITKGYLQEVNGRFNPVAGNMSFEVFKFLDPDSV 343 Query: 935 NVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVA 1114 ++ V + +I +++ +R TPRE A L FP SF+F L Y GNS+SV Sbjct: 344 SITLVSSDAHKIGVVHQNRIRRITPRECARLQGFPDSFQFHPKDSL--AYRQFGNSVSVP 401 Query: 1115 VVAPLLRYLFAGA 1153 VV ++ LF A Sbjct: 402 VVKAVILDLFKSA 414
>P50185:MTD5_DACSA Modification methylase DsaV - Dactylococcopsis salina| Length = 351 Score = 63.5 bits (153), Expect = 2e-09 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 4/169 (2%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDL 229 + ++ ++GIGGMR G + V + +I+ YE NF P G+I L+A Sbjct: 7 KFIDLFAGIGGMRIPFEELG--GKCVFSSEIDKHCQRTYEANFGEMP-TGDITKLSA--- 60 Query: 230 DKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF 406 D H LL+ PCQ +++ G ++ D R F ++ ++ + PQ + +ENV G Sbjct: 61 DSIPYHDLLLAGFPCQAFSQGGRKQGFQDERGQLFFQVAKILND--HRPQAILLENVKGL 118 Query: 407 EVSD---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQE 544 D T +L VL LN+ I+S F +P R R F + Q+ Sbjct: 119 RGHDKGRTLQMILYVLEKLNYVVSWKIISATDFNLPQKRERIFIVGFQD 167 Score = 35.4 bits (80), Expect = 0.65 Identities = 25/85 (29%), Positives = 34/85 (40%) Frame = +2 Query: 893 RYVKGTGSVLATSKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGL 1072 RY K VL N P R TPRE A L FP SF P + Sbjct: 241 RYYKDGSEVLVEQANKNP----------------RVLTPRECARLQGFPESFVIP--VSD 282 Query: 1073 RQQYAMLGNSLSVAVVAPLLRYLFA 1147 Q + GNS+ V+V+ + + + + Sbjct: 283 CQAWRQFGNSVPVSVIRAIAQKMLS 307
>Q59603:MTB1_NEIGO Modification methylase NgoBI - Neisseria gonorrhoeae| Length = 317 Score = 60.8 bits (146), Expect = 1e-08 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 5/178 (2%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 ++ ++ +SGIGG+R G +D A VYE NF +P G+I + D Sbjct: 2 YKTIDLFSGIGGIRLGFEKYGCTNVFSSEWD--KYARQVYEANFGEKPF-GDINGIDPSD 58 Query: 227 LDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF 406 + + L PCQP++ G D R F I +++ P+ +ENV Sbjct: 59 IPDH--DILLAGFPCQPFSIAGKGLGFEDTRGTLFFNIAEILKTKQ--PKAFLLENVKRL 114 Query: 407 EVSD---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQE--PMCFPNP 565 D T +L L L + +L+ L FG+P R R + + + P FP P Sbjct: 115 TTHDSGRTFRIVLETLKQLGYTVYFKVLNTLDFGLPQKRERIYIVGFSDNIPFYFPEP 172
>P24581:MTNX_NEILA Cytosine-specific methyltransferase NlaX - Neisseria lactamica| Length = 313 Score = 58.9 bits (141), Expect = 5e-08 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 5/165 (3%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 +++++ ++GIGG+R + V + +I+ A Y+ N G+I D Sbjct: 2 FKIIDLFAGIGGIRLGFEQAFDDVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTDVAD 61 Query: 227 LDKYKAHAWLLSP--PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENV- 397 + + +LS PCQP+++ GL+K AD R F I ++ ++ PQ +ENV Sbjct: 62 IPDHD----ILSAGFPCQPFSQAGLKKGFADTRGTLFFDIERIL--LAKKPQAFLLENVK 115 Query: 398 --VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYF 526 G + T +L L + +L FG+P +R R + Sbjct: 116 QLKGHDKGRTLQVILAHLQQAGYKVYTEVLKARDFGIPQNRERIY 160 Score = 34.7 bits (78), Expect = 1.1 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +2 Query: 995 RFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYLFA 1147 R TP E A L FP SF+ P + Q Y GNS+ V V+ + + A Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303
>O30868:MTH2_HAEAE Modification methylase HaeII - Haemophilus aegyptius| Length = 318 Score = 58.9 bits (141), Expect = 5e-08 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 ++ ++ ++GIGG+R + G + +D A +YE NF +P G+I ++ D Sbjct: 4 YKTIDLFAGIGGIRLGFEAFGCKNVFSSEWD--KYAQSMYEVNFGEKPF-GDINDISPSD 60 Query: 227 LDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF 406 + + L PCQP++ G AD R F I ++++ + P+ +ENV Sbjct: 61 IPDHDI--LLAGFPCQPFSIAGKGLGFADTRGTLFFNIEAILK--AKKPKAFLLENVKRL 116 Query: 407 EVSD---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNP 565 D T + L+ L + +L+ L FG+P R R + + + + F P Sbjct: 117 TTHDNGNTFKVINDKLNKLGYTVYHKVLNTLDFGLPQKRERIYIVGFLDKLHFEFP 172
>P19888:MTBA_BACAR Modification methylase BanI - Bacillus aneurinolyticus| Length = 428 Score = 58.5 bits (140), Expect = 7e-08 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEV----VEAFDINDVANDVYEHNFAHRPCQGNIQTLA 217 + ++ ++GIGG+R + R E+ V + +I+ A + Y NF P QG+I Sbjct: 4 KFVDLFAGIGGIRIGFERAAKRFELETECVLSSEIDKKACETYALNFKEEP-QGDIH--- 59 Query: 218 AGDLDKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVEN 394 ++ + +LL+ PCQP++ G Q+ D R F ++ ++++ P+ +EN Sbjct: 60 --EITSFPEFDFLLAGFPCQPFSYAGKQQGFGDTRGTLFFEVERVLRDNR--PKAFLLEN 115 Query: 395 VVGFEVSD---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCL 532 V G D T ++ L L + +L+ FGVP +R R + L Sbjct: 116 VRGLVTHDKGRTLKTIISKLEELGYGVSYLLLNSSTFGVPQNRVRIYIL 164 Score = 35.0 bits (79), Expect = 0.85 Identities = 21/50 (42%), Positives = 25/50 (50%) Frame = +2 Query: 995 RFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYLF 1144 R TPRE A L FP F H Y LGNS++V VV ++ LF Sbjct: 364 RRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVTVKVVEKVIEDLF 411
>O31073:MTS1_STRAH Modification methylase SacI - Streptomyces achromogenes| Length = 390 Score = 58.2 bits (139), Expect = 9e-08 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 25/196 (12%) Frame = +2 Query: 53 VLEFYSGIGGMRYSLAS----------SGVRAEVVEAFDINDVANDVYEHNFAH-RPCQG 199 V+ +SG GG+ ++ S SG V A D A D NF H + G Sbjct: 7 VISLFSGAGGLDCAIESCAEPPLVQDGSGSPLRVAVATDYEQTALDTLSANFPHTKTLCG 66 Query: 200 NIQT------LAAGDLDKYKAHAWLLSPPCQPYTRQGL----QKHSADARAFSFIKILSL 349 +IQT L AG L + PPC P+++ G +++SAD A + + + Sbjct: 67 DIQTIPTAELLEAGGLKPGDPTLVIGGPPCTPFSKSGFWIEEKRNSADPNASLLDEYVRV 126 Query: 350 MQNMSFPPQMLFVENVVGFEVSDTH----DQLLGVLSTLNFNTQEFILSPLQFGVPYSRP 517 ++ P+ +ENV G TH D+L+ L +N +L ++GVP R Sbjct: 127 VRESK--PEAFILENVQGLTYK-THQAQFDRLIAGLKDAGYNPTFRVLLAAEYGVPQLRR 183 Query: 518 RYFCLAKQEPMCFPNP 565 R F + +++ F P Sbjct: 184 RVFVVGRRDGKAFHFP 199
>P34877:MTSA_LACLC Modification methylase ScrFIA - Lactococcus lactis subsp. cremoris| (Streptococcus cremoris) Length = 389 Score = 57.4 bits (137), Expect = 2e-07 Identities = 81/364 (22%), Positives = 133/364 (36%), Gaps = 6/364 (1%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 +++++ ++GIGG R + + + V + +I+ A Y+ NF P G+I + D Sbjct: 79 YKMIDLFAGIGGTRLGFHQTE-KVKSVFSSEIDKFAIKTYKANFGDEP-HGDITKIDEKD 136 Query: 227 LDKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 403 + H L+ PCQ +++ G + D R F +I +++ P+ +ENV Sbjct: 137 IPD---HDILVGGFPCQAFSQAGKKLGFDDTRGTLFFEIARIIKEKR--PKAFLLENVKN 191 Query: 404 FEVSD---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPSV- 571 + D T +L L L++ + FG+P +R R + + F S+ Sbjct: 192 LKTHDKGRTFKTILNTLEELDYEVHTALFKARDFGLPQNRERIYIVG------FDRKSIS 245 Query: 572 NEKLLRTPTFLTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIISDFK 751 N + PT L T N + DD + + + DG + K Sbjct: 246 NYSDFQMPTPLQ-EKTRVGNILESVVDDKYTISDKL-----------WDGHQRRKTENKK 293 Query: 752 EAHGCTPSE-TASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKGTGSVLAT 928 G + +YT LS RY K +L Sbjct: 294 NGKGFGYTLFNQDSEYTNTLSA--------------------------RYYKDGSEILIE 327 Query: 929 SKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLS 1108 KN P R TPRE A L FP +F P + Q Y GNS++ Sbjct: 328 QKNKNP----------------RKITPREAARLQGFPENFIIP--VSDTQAYKEFGNSVA 369 Query: 1109 VAVV 1120 V + Sbjct: 370 VPTI 373
>P15446:MTH2_HAEPA Modification methylase HpaII - Haemophilus parainfluenzae| Length = 358 Score = 57.0 bits (136), Expect = 2e-07 Identities = 81/364 (22%), Positives = 130/364 (35%), Gaps = 9/364 (2%) Frame = +2 Query: 56 LEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 ++ ++GIGG R ++ + G + +D + A YE NF P G+I Sbjct: 35 IDLFAGIGGFRIAMQNLGGKCIFSSEWD--EQAQKTYEANFGDLP-YGDITLEETKAFIP 91 Query: 236 YKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEVS 415 K PCQ ++ G + D R F + +++ P+ F+ENV G + Sbjct: 92 EKFDILCAGFPCQAFSIAGKRGGFEDTRGTLFFDVAEIIRRHQ--PKAFFLENVKGLKNH 149 Query: 416 DTHDQLLGVLSTLNFNTQEFILSPL-----QFGVPYSRPRYFCLAKQEPMCFPNPSVNEK 580 D L +L+ L + F+ P FGVP +R R + + + + S E Sbjct: 150 DKGRTLKTILNVLREDLGYFVPEPAIVNAKNFGVPQNRERIYIVGFHKSTGVNSFSYPEP 209 Query: 581 LLRTPTFLTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIISDFKEAH 760 L + TF + E P + +L Q I + KE H Sbjct: 210 LDKIVTFADIR---------------EEKTVPTKYYLSTQYI--------DTLRKHKERH 246 Query: 761 GCTPS----ETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKGTGSVLAT 928 + E D ++ G ++V R FT Sbjct: 247 ESKGNGFGYEIIPDDGIANAIVVGGMGRERNLVIDH--RITDFT---------------- 288 Query: 929 SKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLS 1108 P N++ +N G+R TPRE A L FP S+ P + Y GNS++ Sbjct: 289 -------PTTNIK-GEVNREGIRKMTPREWARLQGFPDSYVIP--VSDASAYKQFGNSVA 338 Query: 1109 VAVV 1120 V + Sbjct: 339 VPAI 342
>P11408:MTM1_MORSP Modification methylase MspI - Moraxella sp.| Length = 418 Score = 54.3 bits (129), Expect = 1e-06 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 4/169 (2%) Frame = +2 Query: 41 SPWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAA 220 S ++ ++ +SGIGG+R S +G + V + +I+ A Y NF P G+I + A Sbjct: 103 SDFKFIDLFSGIGGIRQSFEVNG--GKCVFSSEIDPFAKFTYYTNFGVVPF-GDITKVEA 159 Query: 221 GDLDKYKAHAWLLSPPCQPYTRQGLQK-HSADARAFSFIKILSLMQNMSFPPQMLFVENV 397 + ++ PCQP++ G ++ + F +I+ +++ P +LF+ENV Sbjct: 160 TTIPQH--DILCAGFPCQPFSHIGKREGFEHPTQGTMFHEIVRIIETKKTP--VLFLENV 215 Query: 398 VGFEVSDTHDQLLGVLSTL---NFNTQEFILSPLQFGVPYSRPRYFCLA 535 G D + L ++ TL + +L FG+P R R++ +A Sbjct: 216 PGLINHDDGNTLKVIIETLEDMGYKVHHTVLDASHFGIPQKRKRFYLVA 264 Score = 32.3 bits (72), Expect = 5.5 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +2 Query: 983 ELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPL 1129 E G+R T E + FP F P + Q Y +GNS+ V VV + Sbjct: 347 ETGIRLLTTNECKAIMGFPKDFVIP--VSRTQMYRQMGNSVVVPVVTKI 393
>P34906:MTF1_FUSNU Modification methylase FnuDI - Fusobacterium nucleatum| Length = 344 Score = 54.3 bits (129), Expect = 1e-06 Identities = 75/365 (20%), Positives = 142/365 (38%), Gaps = 11/365 (3%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDL 229 ++L +SG GG+ +G E++ A + + + YE N + + +I+ + + +L Sbjct: 2 KLLSLFSGAGGLDLGFERAGF--EIIVANEYDKTIWETYEKNHKAKLIKKDIREILSEEL 59 Query: 230 DKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGF- 406 K + + PPCQ ++ G + D R F + + +++++ P+ ENV G Sbjct: 60 PK--SDGIIGGPPCQSWSEAGSLRGINDPRGKLFYEYIRILKDIQ--PKFFLAENVKGML 115 Query: 407 --EVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMC-----FPNP 565 ++ ++ +N +L+ +GV R R F + ++ + FP P Sbjct: 116 SKRNTEAVKDIIKEFEEAGYNVFIKLLNAFDYGVAQDRERVFYVGFRKDLNISNFEFPYP 175 Query: 566 --SVNEKLLRTPTF-LTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAI 736 K L+ + L NA ++ N DD V ++ G S I Sbjct: 176 ISEKERKYLKDSIWDLKDNALPGKDKNKTNADDCIV-----------ENHEYLTGSYSTI 224 Query: 737 ISDFKEAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKGTGS 916 S + + P ++ G + +P++ K+ Y++V G Sbjct: 225 FM----------SRNRVRQWEQPAFTVQASGRQCQL-HPQAPTMIKIDKNMYKFVAG--- 270 Query: 917 VLATSKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLG 1096 KENL R + RE A + FP +F+F + L Y M+G Sbjct: 271 ------------KENL---------YRRLSIRECARIQGFPDTFKF-YYTSLEDGYKMVG 308 Query: 1097 NSLSV 1111 N++ V Sbjct: 309 NAVPV 313
>P31974:MTA1_CELCE Modification methylase AluI - Cellulosimicrobium cellulans| (Arthrobacter luteus) Length = 521 Score = 53.5 bits (127), Expect = 2e-06 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 15/196 (7%) Frame = +2 Query: 56 LEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD--- 226 ++ ++GIGG +LA++G E A +I+ A VYE N+ ++P G+I A + Sbjct: 11 VDLFAGIGGFHAALAATGGVCEY--AVEIDREAAAVYERNW-NKPALGDITDDANDEGVT 67 Query: 227 LDKYKAHAWLLSP--PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVV 400 L Y +L+ PCQP+++ G Q A+ R F I +++ P +L +ENV Sbjct: 68 LRGYDGPIDVLTGGFPCQPFSKSGAQHGMAETRGTLFWNIARIIEERE--PTVLILENVR 125 Query: 401 GFEVSDTHDQLLGVLSTLNFNTQEFILSPLQF----------GVPYSRPRYFCLAKQEPM 550 + L ++ TL F E +P F G P R R F A Sbjct: 126 NLVGPRHRHEWLTIIETLRFFGYEVSGAPAIFSPHLLPAWMGGTPQVRERVFITA----T 181 Query: 551 CFPNPSVNEKLLRTPT 598 P +E++ RT T Sbjct: 182 LVPERMRDERIPRTET 197
>P34879:MTS2_SHISO Modification methylase SsoII - Shigella sonnei| Length = 379 Score = 52.8 bits (125), Expect = 4e-06 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 +R+++ ++GIGG R + VV + + + A Y N+ P G+I + D Sbjct: 72 YRMIDLFAGIGGTRLGFHQTNA-VNVVFSSEWDKFAQKTYHANYGDFP-DGDITKIDEKD 129 Query: 227 LDKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENV-- 397 + H L+ PC +++ GL+K D R F I +++ P +ENV Sbjct: 130 IPD---HEILVGGFPCVAFSQAGLKKGFNDTRGTLFFDIARIIKEKK--PHAFLLENVKN 184 Query: 398 -VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLA-------KQEPMC 553 +G + T + L LN+ I + FGVP +R R + + E Sbjct: 185 LLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQNRERIYIVGFNKEKVRNHEHFT 244 Query: 554 FPNP 565 FP P Sbjct: 245 FPTP 248 Score = 35.4 bits (80), Expect = 0.65 Identities = 24/76 (31%), Positives = 30/76 (39%) Frame = +2 Query: 893 RYVKGTGSVLATSKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGL 1072 RY K +L K P R TPRE + L FPS F P + Sbjct: 309 RYYKDGSEILIEQKGSNP----------------RKITPREASRLQGFPSDFIIP--VSD 350 Query: 1073 RQQYAMLGNSLSVAVV 1120 Q Y GNS++V V+ Sbjct: 351 TQAYKQFGNSVAVPVI 366
>P17044:MTBF_BACSU Modification methylase BsuFI - Bacillus subtilis| Length = 409 Score = 51.2 bits (121), Expect = 1e-05 Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 14/214 (6%) Frame = +2 Query: 56 LEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 ++ ++GIGG+R + +D A YE N+ +P G+I + D+ Sbjct: 104 IDLFAGIGGIRLGFEDKYTKCVFSSEWD--KYAAQTYEANYGEKP-HGDITKINENDIPD 160 Query: 236 YKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEVS 415 L PCQP++ G ++ A R +L +++ P+M +ENV G + Sbjct: 161 QDV--LLAGFPCQPFSNIGKREGFAHERRNIIFDVLRILKKKQ--PKMFLLENVKGLLTN 216 Query: 416 D---THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPM-----CFP--NP 565 D T +L L +L ++ ++ FG+P R R + + FP NP Sbjct: 217 DNGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVGFHPDLGINDFSFPKGNP 276 Query: 566 S----VNEKLLRTPTFLTLNATTAQNSYDQNEDD 655 +N L PT ++ + Q SY +DD Sbjct: 277 DNKVPINAILEHNPTGYSI-SKRLQESYLFKKDD 309 Score = 34.7 bits (78), Expect = 1.1 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 983 ELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVV 1120 E GLR F+ E+ L FP F+ P + Q Y GNS++V ++ Sbjct: 345 ETGLRLFSELELKRLMGFPVDFKVP--VSRTQMYRQFGNSVAVPMI 388
>P24600:MTD1_HERAU Modification methylase HgiDI - Herpetosiphon aurantiacus| (Herpetosiphon giganteus) Length = 309 Score = 50.8 bits (120), Expect = 1e-05 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 5/166 (3%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDL 229 + ++ ++G GGM +G E+V A D A + Y+ NF H + ++ + A + Sbjct: 2 KTIDLFAGCGGMSLGFMQAGF--EIVAAVDNWRPAINTYQQNFTHPIHELDLAQIDAA-V 58 Query: 230 DKYKAHAWLL---SPPCQPYTRQGLQKHSADAR--AFSFIKILSLMQNMSFPPQMLFVEN 394 K H+ L PPCQ ++ G + F KI+ +Q P + +EN Sbjct: 59 SLIKTHSPELIIGGPPCQDFSSAGKRDEGLGRANLTLDFAKIVLAIQ-----PAWVIMEN 113 Query: 395 VVGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCL 532 V +S H Q +L ++ + +L GVP R R F + Sbjct: 114 VERARLSKIHQQACSMLGDEGYSLAQVVLDASLCGVPQLRKRTFVI 159
>P45000:MTH5_HAEIN Modification methylase HindV - Haemophilus influenzae| Length = 304 Score = 50.4 bits (119), Expect = 2e-05 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTL--AAG 223 + ++ +SG GG+ +G E+ AF+ + A ++Y++NF+H +++ A Sbjct: 2 KCVDLFSGCGGLSLGFELAGF--EICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKEAVE 59 Query: 224 DLDKYKAHAWLLSPPCQPYTRQGLQKHSADAR--AFSFIKILSLMQNMSFPPQMLFVENV 397 + KY + PPCQ ++ G + S +SF I+ ++ P+ +ENV Sbjct: 60 KIKKYSPDLIMGGPPCQDFSSAGKRDISLGRADLTYSFANIVCNIR-----PKWFVMENV 114 Query: 398 VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAK-QEPMCFPNPSVN 574 + S ++ + IL GVP SR R+ + K F P+++ Sbjct: 115 EQIKKSHILQDIINQFIDFGYGLTSAILDASYCGVPQSRTRFSLIGKLNSEHNFLIPTLS 174 Query: 575 EKLLRTP 595 KL P Sbjct: 175 RKLSDKP 181
>P25262:MTB1_HERAU Modification methylase HgiBI - Herpetosiphon aurantiacus| (Herpetosiphon giganteus) Length = 437 Score = 49.3 bits (116), Expect = 4e-05 Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 11/191 (5%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 +R ++ ++GIGG R L + G V + +I+ A VY N+ N+ + A Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG--GVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITA-- 59 Query: 227 LDKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 403 + + AH L+ PCQP++ G + D R + ++ L+Q P+ ENV G Sbjct: 60 IQQLPAHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLVQINQ--PKAFIFENVKG 117 Query: 404 FEVSDTHDQL-----LGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPM-----C 553 + D ++L L L ++ +L+ FGV +R R F + Q+ + Sbjct: 118 --LVDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQQKLDLNGFS 175 Query: 554 FPNPSVNEKLL 586 FP + +E+ L Sbjct: 176 FPEYTESEQRL 186
>P29567:MTHT_METTF Modification methylase MthTI - Methanobacterium thermoformicicum| Length = 330 Score = 48.1 bits (113), Expect = 1e-04 Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 8/212 (3%) Frame = +2 Query: 53 VLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLD 232 + F+SG GG+ +G +V A D +E N + + I+ L ++ Sbjct: 5 IASFFSGAGGLDLGFTKAGFN--IVFANDNWKGCWKTFEKNHGIKINKKPIEWLKPSEIP 62 Query: 233 KYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEV 412 ++ PPCQ ++ G + D R +F + L++ P ENV G V Sbjct: 63 DVVG--FIGGPPCQSWSLAGSMCGADDPRGKTFYAYVDLVKEKD--PLFFLAENVPGI-V 117 Query: 413 SDTH----DQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMC----FPNPS 568 S TH +L+ + +N + +L+ +GVP R R F + +E + FP P Sbjct: 118 SRTHLPEFKRLVNSFIDIGYNVEYKVLNAKDYGVPQDRKRVFIVGYREDLNLKFEFPKPL 177 Query: 569 VNEKLLRTPTFLTLNATTAQNSYDQNEDDLEV 664 + LR A N ++LEV Sbjct: 178 NKKVTLRDAIGDLPEPKPALEKNRSNGENLEV 209
>P25266:MTE1_HERAU Modification methylase HgiEI - Herpetosiphon aurantiacus| (Herpetosiphon giganteus) Length = 437 Score = 46.2 bits (108), Expect = 4e-04 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGD 226 +R ++ ++GIGG R L + G V + +I+ A VY N+ N+ + Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG--GVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDIT--Q 59 Query: 227 LDKYKAHAWLLSP-PCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVG 403 + + AH L+ PCQP++ G + D R + ++ L+Q P+ ENV G Sbjct: 60 IQQLPAHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLVQINQ--PKAFIFENVKG 117 Query: 404 FEVSDTHDQL-----LGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPM 550 + D ++L L L ++ +L+ FGV +R R F + Q+ + Sbjct: 118 --LVDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQQKL 169
>P08455:MTP2_NEIGO Modification methylase NgoPII - Neisseria gonorrhoeae| Length = 330 Score = 45.1 bits (105), Expect = 8e-04 Identities = 80/368 (21%), Positives = 135/368 (36%), Gaps = 14/368 (3%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDL 229 +++ +SG GG+ +G +D A H H +G+I+ + D Sbjct: 2 KIISLFSGCGGLDLGFEKAGFEIPAANEYDKTIWATFKANHPKTHL-IEGDIRKIKEEDF 60 Query: 230 DKYKAHAWLLSPPCQPYTRQGLQKHSADARA---FSFIKILSLMQNMSFPPQMLFVENVV 400 + + + PPCQ ++ G + DAR F +I+IL Q P+ ENV Sbjct: 61 PE-EIDGIIGGPPCQSWSEAGALRGIDDARGQLFFDYIRILKSKQ-----PKFFLAENVS 114 Query: 401 GFEVSDTHD----QLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPM----CF 556 G +++ H+ LL + ++ + + +GV R R F + ++ + F Sbjct: 115 GM-LANRHNGAVQNLLKMFDGCGYDVTLTMANAKDYGVAQERKRVFYIGFRKDLEIKFSF 173 Query: 557 PNPSV---NEKLLRTPTFLTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGEC 727 P S +K+ L TA S QN+ + + V N G Sbjct: 174 PKGSTVEDKDKITLKDVIWDLQ-DTAVPSAPQNKTNPDAVNNN----------EYFTGSF 222 Query: 728 SAIISDFKEAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKG 907 S I Q +TV S G + +P++ + + YR+ G Sbjct: 223 SPIFMSRNRVKAWD-----EQGFTVQAS-----GRQCQL-HPQAPKMEKHGANDYRFAAG 271 Query: 908 TGSVLATSKNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYA 1087 KE L R T REVA + FP +F+F + + Y Sbjct: 272 ---------------KETL---------YRRMTVREVARIQGFPDNFKF-IYQNVNDAYK 306 Query: 1088 MLGNSLSV 1111 M+GN++ V Sbjct: 307 MIGNAVPV 314
>Q8EL95:MT36_OCEIH Putative modification methylase OB3336 - Oceanobacillus iheyensis| Length = 460 Score = 43.9 bits (102), Expect = 0.002 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 20/181 (11%) Frame = +2 Query: 53 VLEFYSGIGGMR--YSLASSGVRAEVVEAFDINDVAN-DVYEHNFAH-RPCQGNIQTLAA 220 V++ +SG GG+ + LA +R + D +DVA+ +++ H R +I L+A Sbjct: 17 VVDLFSGCGGLALGFQLAGFNIRKGIELDRDASDVASFNLHWRQGKHDRHLNNDITLLSA 76 Query: 221 G----DLDKYKAHAWLLSPPCQPYTRQGLQK---------HSADARAFSFIKILSLMQNM 361 DLD+ + PPCQ Y++ G K DAR + L ++ Sbjct: 77 NEFYNDLDRKNDLIVIGGPPCQAYSKIGRAKLKSLGEERRQENDARGKLYENFLDYALHV 136 Query: 362 SFPPQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCL 532 ++ +ENV V + + D + +L ++ +L+ FGVP +R R F + Sbjct: 137 D--ANVIVMENVPEAVNYGGVNIPDTVCDILINKGYDAIWTVLNAADFGVPQTRVRLFVM 194 Query: 533 A 535 A Sbjct: 195 A 195
>P20589:MTH3_HAEAE Modification methylase HaeIII - Haemophilus aegyptius| Length = 330 Score = 43.1 bits (100), Expect = 0.003 Identities = 69/360 (19%), Positives = 136/360 (37%), Gaps = 7/360 (1%) Frame = +2 Query: 53 VLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLD 232 ++ +SG GG+ +G R ++ A + + YE N + + +G+I +++ + Sbjct: 3 LISLFSGAGGLDLGFQKAGFR--IICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFP 60 Query: 233 KYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEV 412 K + PPCQ ++ G + D R F + + +++ P ENV G + Sbjct: 61 K--CDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKK--PIFFLAENVKGM-M 115 Query: 413 SDTHD----QLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFPNPSVNEK 580 + H+ + + ++ +L+ +GV R R F + ++ + Sbjct: 116 AQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPH 175 Query: 581 LLRTPTFLTLNATTAQN---SYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIISDFK 751 L++ PTF + N + D+N+ + P + G S I Sbjct: 176 LIK-PTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYF--------IGSYSTIFM--- 223 Query: 752 EAHGCTPSETASQDYTVPLSLIERWGNAMDIVYPESKRCCCFTKSYYRYVKGTGSVLATS 931 S + + P ++ G + +P++ +K+ ++V+G Sbjct: 224 -------SRNRVRQWNEPAFTVQASGRQCQL-HPQAPVMLKVSKNLNKFVEG-------- 267 Query: 932 KNVRPVPKENLEISSLNELGLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSV 1111 KE+L R T RE A + FP F F + L Y M+GN++ V Sbjct: 268 -------KEHL---------YRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>P50196:MTE8_ECOLI Modification methylase Eco47II - Escherichia coli| Length = 417 Score = 43.1 bits (100), Expect = 0.003 Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 21/201 (10%) Frame = +2 Query: 47 WRVLEFYSGIGGMRYSLASSGVRAEVVEAFDI-------------NDVANDVYEHNFAHR 187 + VLE ++G GGM L +G+++ ++ D N V DV + +F Sbjct: 81 YTVLELFAGAGGMALGLEKAGLKSVLLNEIDSHACKTLRKNRPEWNVVEGDVSQVDFT-- 138 Query: 188 PCQGNIQTLAAGDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSF 367 P + + LA G PCQ ++ G + D R F + + ++ Sbjct: 139 PYRNTVDVLAGGF-------------PCQAFSYAGKKLGFEDTRGTLFFEFARAAKEIN- 184 Query: 368 PPQMLFVENVVGF---EVSDTHDQLLGVLSTLNFNTQE-FILSPLQFGVPYSRPRYFCLA 535 P++L ENV G + T + + +++ L + E +L + + VP R R +A Sbjct: 185 -PKVLLAENVRGLLNHDAGRTLETIKNIITDLGYTLFEPRVLKAIFYKVPQKRERLIIVA 243 Query: 536 KQEPMC----FPNPSVNEKLL 586 + + + PS K+L Sbjct: 244 VRNDLADGIDYEWPSSYNKIL 264
>P09795:MTS1_SALIN Modification methylase SinI - Salmonella infantis| Length = 461 Score = 42.0 bits (97), Expect = 0.007 Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 34/240 (14%) Frame = +2 Query: 2 ATASRSPKAMETPSPWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFA 181 A S S A E + + L F+SG G+ + +G E + A +I+ A D N Sbjct: 60 AQNSYSMLASEPKNKPKALSFFSGAMGLDLGIEQAGF--ETLLASEIDKAARDTILSNRP 117 Query: 182 HRPCQGNIQTLAAGDLDKY-------KAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKI 340 + G+I+ D+ K + + PPCQ ++ G + D R FIK Sbjct: 118 NMALIGDIRDYTTEDILKLAGVSSGNEIDLIMGGPPCQAFSTAGKRLGLEDERGNVFIKY 177 Query: 341 LSLMQNMSFPPQMLFVENVVGF------------------------EVSDTHDQLLGVLS 448 L + + P+ + +ENV G + ++ ++ Sbjct: 178 LDVA--LDIRPKYIVIENVRGLLSAPMKHRPHNERGEGLPPLKSEEQPGGVLHYIIRIIK 235 Query: 449 TLNFNTQEFILSPLQFGVPYSRPRYFCLAKQEPMCFP--NPSVNEK-LLRTPTFLTLNAT 619 + ++ + + FGVP R R + ++ P P+ +EK P ++TL T Sbjct: 236 SAGYSVSFNLYNSANFGVPQIRERVIIICSRDGSRVPFLQPTHSEKGEYGLPKWITLRET 295
>O33481:MTP1_PSYTA Modification methylase PspPI - Psychrobacter sp. (strain TA137)| Length = 416 Score = 40.4 bits (93), Expect = 0.020 Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 21/208 (10%) Frame = +2 Query: 26 AMETPSPWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDI-------------NDVANDVY 166 A+E + ++E ++G GG+ L +G ++ ++ D N + +D+ Sbjct: 70 AVEPSRSYSLVELFAGAGGLALGLEQAGFKSVLLNEKDKYACATLRANRPNWNVIEDDIE 129 Query: 167 EHNFAHRPCQGNIQTLAAGDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILS 346 +F H G + L G PCQP++ G Q D R ++ Sbjct: 130 NVDFTH--LNGKVDLLTGGF-------------PCQPFSYAGKQLGFEDLRGTLVFEMAR 174 Query: 347 LMQNMSFPPQMLFVENVVGFEVSD---THDQLLGVLSTLNFN-TQEFILSPLQFGVPYSR 514 ++ + P++ ENV G +D T ++ VL L + ++ + + + VP R Sbjct: 175 AIKEIK--PKVFLAENVKGLAENDGGRTLSIIIKVLEDLGYKILEKEVYKAIFYKVPQKR 232 Query: 515 PRYFCLAKQ----EPMCFPNPSVNEKLL 586 R + + + + + PS K+L Sbjct: 233 ERLIIIGVRTDLYDKLAYEKPSPYYKVL 260
>P50188:MTN1_NOCAE Modification methylase NaeI - Nocardia aerocolonigenes| (Lechevalieria aerocolonigenes) Length = 413 Score = 38.9 bits (89), Expect = 0.059 Identities = 43/179 (24%), Positives = 68/179 (37%), Gaps = 16/179 (8%) Frame = +2 Query: 53 VLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVAN-------------DVYEHNFAHRPC 193 V+E +G GG L +G + D+N A DV + + + Sbjct: 6 VVEICAGAGGQALGLEKAGFSHRLAVELDVNAAATLRKNLKSDVVITGDVADPSVLNPME 65 Query: 194 QGNIQTLAAGDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPP 373 + LA G PC P++ G Q + D R F + L M P Sbjct: 66 HLGVSLLAGG-------------VPCPPFSIAGKQLGADDMRDL-FAWAVELCDVMK--P 109 Query: 374 QMLFVENVVGFEV---SDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQ 541 + L +ENV G + + +L L+ + + + +L FGVP RPR+ +A Q Sbjct: 110 RALMLENVRGLSMPRFAGYRQHVLDRLNDMGYVAEWRLLHASDFGVPQLRPRFVLVALQ 168
>P34882:MTAA_SYNP2 Modification methylase AquI alpha subunit - Synechococcus sp.| (strain PCC 7002) (Agmenellum quadruplicatum) Length = 248 Score = 35.8 bits (81), Expect = 0.50 Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPC-QGNIQT----- 211 +++ +SG GGM ++G V A + + + N P +G+I + Sbjct: 4 KLISLFSGAGGMDIGFHAAGFSTAV--AVEQDPSCCNTLRLNMPDTPVIEGDITSITTQV 61 Query: 212 -LAAGDLDKYKAHAWLLSPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMSFPPQMLFV 388 L A ++ + + PPCQ ++ G + D R ++ L +++ P+ + Sbjct: 62 ILEAAKVNPLEIDLVIGGPPCQSFSLAGKRMGMDDPRGMLVLEFLRVVREAL--PKCFVM 119 Query: 389 ENVVGFEVSDTHDQLLGVLST-----LNFNTQEF-------ILSPLQFGVPYSRPRYFCL 532 ENV G ++ + + L + T + + +E+ +L+ FGVP R R F + Sbjct: 120 ENVKGM-INWSKGKALEAIMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRERVFIV 178 Query: 533 AKQ--EPMCFPNPS 568 + + FP P+ Sbjct: 179 GNRLGKTFQFPEPT 192
>Q92072:DNMT1_CHICK DNA - Gallus gallus (Chicken)| Length = 1537 Score = 35.4 bits (80), Expect = 0.65 Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 24/196 (12%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEV---------VEAFDINDVANDVY--EHNFAHRPCQ 196 R L+ +SG GG+ +GV + +AF +N+ V+ + N + Sbjct: 1055 RTLDVFSGCGGLSEGFHQAGVSETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVM 1114 Query: 197 GNIQTLAAGDLDKYKAHAWLL--SPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMS-- 364 +T + G K +L PPCQ ++ G+ + ++R +S K ++ +S Sbjct: 1115 SGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS--GMNRF--NSRTYSKFKNSLVVSFLSYC 1170 Query: 365 --FPPQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFC 529 + P+ +ENV V F+ S L L + + +L Q+GV +R R Sbjct: 1171 DYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIV 1230 Query: 530 LA----KQEPMCFPNP 565 LA ++ PM FP P Sbjct: 1231 LAAAPGEKLPM-FPEP 1245
>Q24K09:DNMT1_BOVIN DNA - Bos taurus (Bovine)| Length = 1611 Score = 35.4 bits (80), Expect = 0.65 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 28/200 (14%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEV---------VEAFDINDVANDVYEHNFAHRPCQGN 202 R L+ +SG GG+ +G+ + +AF +N+ + V+ + C Sbjct: 1137 RTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVFTED-----CNVL 1191 Query: 203 IQTLAAGDLDK-------YKAHAWLL--SPPCQPYTRQGLQKHSADARAFSFIKILSLMQ 355 ++ + AG++ K +L PPCQ ++ G+ + ++R +S K ++ Sbjct: 1192 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS--GMNRF--NSRTYSKFKNSLVVS 1247 Query: 356 NMS----FPPQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSR 514 +S + P+ +ENV V F+ S L L + + +L Q+GV +R Sbjct: 1248 FLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTR 1307 Query: 515 PRYFCLAKQ--EPM-CFPNP 565 R LA EP+ FP P Sbjct: 1308 RRAIILAAAPGEPLPLFPEP 1327
>Q8DNP4:PRMA_STRR6 Ribosomal protein L11 methyltransferase - Streptococcus pneumoniae| (strain ATCC BAA-255 / R6) Length = 316 Score = 34.3 bits (77), Expect = 1.4 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N P NI +AAGDL K Sbjct: 178 GTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIH-VAAGDLLK 231
>Q97P62:PRMA_STRPN Ribosomal protein L11 methyltransferase - Streptococcus pneumoniae| Length = 316 Score = 34.3 bits (77), Expect = 1.4 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N P NI +AAGDL K Sbjct: 178 GTGSGVLSIASSLLGAKEIFAYDLDDVAVRVAQENIELNPGMENIH-VAAGDLLK 231
>Q9Z330:DNMT1_RAT DNA - Rattus norvegicus (Rat)| Length = 1622 Score = 34.3 bits (77), Expect = 1.4 Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 28/212 (13%) Frame = +2 Query: 14 RSPKAMETPSPWRVLEFYSGIGGMRYSLASSGVRAEV---------VEAFDINDVANDVY 166 + P+A R L+ +SG GG+ +G+ + +AF +N+ V+ Sbjct: 1133 KEPEAAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNNPGTTVF 1192 Query: 167 EHNFAHRPCQGNIQTLAAGDLDK-------YKAHAWLL--SPPCQPYTRQGLQKHSADAR 319 + C ++ + AG++ K +L PPCQ ++ G+ + ++R Sbjct: 1193 TED-----CNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS--GMNRF--NSR 1243 Query: 320 AFSFIKILSLMQNMS----FPPQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFI 478 +S K ++ +S + P+ +ENV V F S L L + + + Sbjct: 1244 TYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTLRCLVRMGYQCTFGV 1303 Query: 479 LSPLQFGVPYSRPRYFCLAK---QEPMCFPNP 565 L Q+GV +R R LA ++ FP P Sbjct: 1304 LQAGQYGVAQTRRRAIILAAAPGEKLPLFPEP 1335
>Q8DX85:PRMA_STRA5 Ribosomal protein L11 methyltransferase - Streptococcus agalactiae| serotype V Length = 317 Score = 33.9 bits (76), Expect = 1.9 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N P NI +AAGDL K Sbjct: 179 GTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTENIH-VAAGDLLK 232
>Q8E307:PRMA_STRA3 Ribosomal protein L11 methyltransferase - Streptococcus agalactiae| serotype III Length = 317 Score = 33.9 bits (76), Expect = 1.9 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N P NI +AAGDL K Sbjct: 179 GTGSGVLSIASSLLGAKDIYAYDLDDVAVRVAQENIDMNPGTENIH-VAAGDLLK 232
>P26358:DNMT1_HUMAN DNA - Homo sapiens (Human)| Length = 1616 Score = 33.9 bits (76), Expect = 1.9 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 23/195 (11%) Frame = +2 Query: 50 RVLEFYSGIGGMRYSLASSGVRAEV---------VEAFDINDVANDVY--EHNFAHRPCQ 196 R L+ +SG GG+ +G+ + +AF +N+ + V+ + N + Sbjct: 1140 RTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVM 1199 Query: 197 GNIQTLAAGDLDKYKAHAWLL--SPPCQPYTRQGLQKHSADARAFSFIKILSLMQNMS-- 364 T + G K +L PPCQ ++ G+ + ++R +S K ++ +S Sbjct: 1200 AGETTNSRGQRLPQKGDVEMLCGGPPCQGFS--GMNRF--NSRTYSKFKNSLVVSFLSYC 1255 Query: 365 --FPPQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFC 529 + P+ +ENV V F+ S L L + + +L Q+GV +R R Sbjct: 1256 DYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAII 1315 Query: 530 LAK---QEPMCFPNP 565 LA ++ FP P Sbjct: 1316 LAAAPGEKLPLFPEP 1330
>P34878:MTSB_LACLC Modification methylase ScrFIB - Lactococcus lactis subsp. cremoris| (Streptococcus cremoris) Length = 360 Score = 33.5 bits (75), Expect = 2.5 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Frame = +2 Query: 371 PQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCLAKQ 541 P+ L +ENV VG ++ L L +L + IL+ FG+P +R R FC++ Sbjct: 162 PKYLMMENVKNLVGKNHKVNFNKFLLYLESLGYTNYWDILNARDFGIPQNRERVFCISIL 221 Query: 542 EP 547 P Sbjct: 222 NP 223
>P13864:DNMT1_MOUSE DNA - Mus musculus (Mouse)| Length = 1620 Score = 33.1 bits (74), Expect = 3.2 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 24/208 (11%) Frame = +2 Query: 14 RSPKAMETPSPWRVLEFYSGIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHN-----F 178 + P+A R L+ +SG GG+ +G+ +E + A ++ D A + N Sbjct: 1131 KEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNPGTTV 1189 Query: 179 AHRPCQGNIQTLAAGDLDK-------YKAHAWLL--SPPCQPYTRQGLQKHSADARAFSF 331 C ++ + AG++ K +L PPCQ ++ G+ + ++R +S Sbjct: 1190 FTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS--GMNRF--NSRTYSK 1245 Query: 332 IKILSLMQNMS----FPPQMLFVENV---VGFEVSDTHDQLLGVLSTLNFNTQEFILSPL 490 K ++ +S + P+ +ENV V + S L L + + +L Sbjct: 1246 FKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAG 1305 Query: 491 QFGVPYSRPRYFCLAK---QEPMCFPNP 565 Q+GV +R R LA ++ FP P Sbjct: 1306 QYGVAQTRRRAIILAAAPGEKLPLFPEP 1333
>Q55680:Y005_SYNY3 Uncharacterized protein sll0005 - Synechocystis sp. (strain PCC| 6803) Length = 681 Score = 32.3 bits (72), Expect = 5.5 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 11/158 (6%) Frame = +2 Query: 92 SLASSGVRAEVVEAFDINDVANDVYEHNFAHR-PCQGNIQTLAAGDLDKYKAHAWL---L 259 ++ + G+ A + + + EH F H P GN+ +A G L A+L + Sbjct: 303 AIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRL------AYLDFGM 356 Query: 260 SPPCQPYTRQGLQK-------HSADARAFSFIKILSLMQNMSFPPQMLFVENVVGFEVSD 418 QPY R GL + D+ A ++K+ L + P + + V G Sbjct: 357 MSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFG----- 411 Query: 419 THDQLLGVLSTLNFNTQEFILSPLQFGVPYSRPRYFCL 532 + L ++ LNF + +S + + P+ P Y+ L Sbjct: 412 --NALGASVAELNFKSITDQMSAMMYEFPFRVPAYYAL 447
>P43420:MTB6_BACSF Modification methylase Bsp6I - Bacillus sp. (strain RFL6)| Length = 315 Score = 32.3 bits (72), Expect = 5.5 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +2 Query: 989 GLRFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYLF 1144 G+R TPRE N +P F P+ + Y GNS+ V V+ + ++ Sbjct: 261 GIRKLTPRECFNFQGYPEDFILPE-LAPTHLYKQAGNSVVVPVIRRIAENIY 311
>Q8NZ98:PRMA_STRP8 Ribosomal protein L11 methyltransferase - Streptococcus pyogenes| serotype M18 Length = 317 Score = 32.0 bits (71), Expect = 7.2 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N NI +AAGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIH-VAAGDLLK 232
>Q5X9S8:PRMA_STRP6 Ribosomal protein L11 methyltransferase - Streptococcus pyogenes| serotype M6 Length = 317 Score = 32.0 bits (71), Expect = 7.2 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N NI +AAGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIH-VAAGDLLK 232
>Q8K5Q9:PRMA_STRP3 Ribosomal protein L11 methyltransferase - Streptococcus pyogenes| serotype M3 Length = 317 Score = 32.0 bits (71), Expect = 7.2 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N NI +AAGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQENIDLNQGTDNIH-VAAGDLLK 232
>P34905:MTB1_BREBE Modification methylase BbvI - Brevibacillus brevis (Bacillus| brevis) Length = 374 Score = 32.0 bits (71), Expect = 7.2 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 29/203 (14%) Frame = +2 Query: 59 EFYSGIGGMRYSLASSG-VRAEVVEAFDINDV-ANDVYE---HNFAHRPCQGNIQTLAAG 223 E + G GG+ + + E E F+ AND+ E F C ++ G Sbjct: 7 ELFCGPGGLALGAKEAKYMHPETGEVFEFEHAWANDIDEWACETFRTNICPDRPDSVVCG 66 Query: 224 DL---------DKY-KAHAWLLSPPCQPYT----RQGLQKHSADARAFSFIKILSLMQNM 361 D+ +K+ + A+ PC Y+ +G++ + ++ +KIL+ Sbjct: 67 DVRELDIKSLGEKFGEIDAFTFGFPCNDYSIVGEHKGMEGNYGPLYSYG-VKILN----- 120 Query: 362 SFPPQMLFVENVVGFEVSDTHDQLLGVLSTL------NFNTQEFILSPLQFGVPYSRPRY 523 + P + ENV G + ++ LG+L+ L + + ++GVP R R Sbjct: 121 EYNPLVFIAENVGGLQSANEGKAFLGILNDLASAGKYGYKLVPHLYKFEEYGVPQRRHRI 180 Query: 524 FC--LAKQEPMCF--PNPSVNEK 580 + K + + F P P+ EK Sbjct: 181 IIVGIRKDQDVAFRVPEPTHKEK 203
>P13215:DNBI_SCMVC Major DNA-binding protein - Simian cytomegalovirus (strain Colburn)| Length = 1160 Score = 32.0 bits (71), Expect = 7.2 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Frame = +2 Query: 419 THDQLLGVLSTLNF--NTQEFILSPLQFGVPYSRPRYFCLAKQEPM-CFPNPSVNEKLLR 589 T+ ++ VL+TL+ ++ +++PL G+ + FC + + P+ C+ + + Sbjct: 23 TNHEMNEVLATLSLCDSSSPVVIAPLLMGLTVDQD--FCTSVRTPVVCYDGGVLTKVTSF 80 Query: 590 TPTFLTLNATTAQNSYDQNEDDLEVVCNPIRNFLEAQSIVIGDGECSAIISDFKEAHGCT 769 P L T + + D++ +C+ R +S + +G ++ A GC Sbjct: 81 CPFALYFYNTQGIVDFSEPHGDVQRLCDETRQRYAIESYMPEEGRAPTDLAALCTAAGCD 140 Query: 770 PSE 778 P E Sbjct: 141 PQE 143
>Q99XW8:PRMA_STRP1 Ribosomal protein L11 methyltransferase - Streptococcus pyogenes| serotype M1 Length = 317 Score = 31.6 bits (70), Expect = 9.4 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +2 Query: 71 GIGGMRYSLASSGVRAEVVEAFDINDVANDVYEHNFAHRPCQGNIQTLAAGDLDK 235 G G S+ASS + A+ + A+D++DVA V + N NI +AAGDL K Sbjct: 179 GTGSGVLSIASSLLGAKTIYAYDLDDVAVRVAQDNIDLNQGTDNIH-VAAGDLLK 232
>Q58600:MT52_METJA Probable modification methylase MJ1200 - Methanococcus jannaschii| Length = 366 Score = 31.6 bits (70), Expect = 9.4 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +2 Query: 995 RFFTPREVANLHSFPSSFRFPDHIGLRQQYAMLGNSLSVAVVAPLLRYL 1141 R TPRE A L S+P F G+R Y +G S+ VA+ + R + Sbjct: 315 RLLTPREQARLMSYPDYHLFAG--GIRSCYNQIGESVPVALSRAIARVI 361
>P0AED9:DCM_ECOLI DNA-cytosine methyltransferase - Escherichia coli| Length = 472 Score = 31.6 bits (70), Expect = 9.4 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 30/176 (17%) Frame = +2 Query: 20 PKAMETPSPWRVLEFYSGIGGMRYSLASSGVRA--------EVVEAFDINDVAN------ 157 P A +R ++ ++GIGG+R S G + V + N + Sbjct: 78 PPAHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHF 137 Query: 158 --DVYEHNFAHRPCQGNIQTLAAGDLDKY-KAHAWLLSP-PCQPYTRQGLQKHSADARA- 322 D+ + +H+ +G AA + ++ H LL+ PCQP++ G+ K ++ RA Sbjct: 138 NEDIRDITLSHK--EGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAH 195 Query: 323 -----------FSFIKILSLMQNMSFPPQMLFVENVVGFEVSDTHDQLLGVLSTLN 457 F ++I+ + P M +ENV + D ++ TL+ Sbjct: 196 GFACDTQGTLFFDVVRIIDARR-----PAMFVLENVKNLKSHDQGKTFRIIMQTLD 246
>P0AEE0:DCM_ECO57 DNA-cytosine methyltransferase - Escherichia coli O157:H7| Length = 472 Score = 31.6 bits (70), Expect = 9.4 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 30/176 (17%) Frame = +2 Query: 20 PKAMETPSPWRVLEFYSGIGGMRYSLASSGVRA--------EVVEAFDINDVAN------ 157 P A +R ++ ++GIGG+R S G + V + N + Sbjct: 78 PPAHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHF 137 Query: 158 --DVYEHNFAHRPCQGNIQTLAAGDLDKY-KAHAWLLSP-PCQPYTRQGLQKHSADARA- 322 D+ + +H+ +G AA + ++ H LL+ PCQP++ G+ K ++ RA Sbjct: 138 NEDIRDITLSHK--EGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAH 195 Query: 323 -----------FSFIKILSLMQNMSFPPQMLFVENVVGFEVSDTHDQLLGVLSTLN 457 F ++I+ + P M +ENV + D ++ TL+ Sbjct: 196 GFACDTQGTLFFDVVRIIDARR-----PAMFVLENVKNLKSHDQGKTFRIIMQTLD 246 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 281,236,627 Number of extensions: 6308480 Number of successful extensions: 14066 Number of sequences better than 10.0: 54 Number of HSP's gapped: 14038 Number of HSP's successfully gapped: 66 Length of query: 513 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 395 Effective length of database: 68,319,629 Effective search space: 26986253455 Effective search space used: 26986253455 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
