| Clone Name | FLbaf64c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete sequence Length = 196765 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Plus Query: 19 cacacacacaaactaaaaatttca 42 |||||||||||||||||||||||| Sbjct: 92335 cacacacacaaactaaaaatttca 92358
>ref|XM_460730.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F09361g) partial mRNA Length = 4035 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1472 tattgatccatttggatgatcaa 1494 ||||||||||||||||||||||| Sbjct: 1220 tattgatccatttggatgatcaa 1242
>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence Length = 187332 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1287 tttcaagcatttaagagaaactt 1309 ||||||||||||||||||||||| Sbjct: 97607 tttcaagcatttaagagaaactt 97585
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1472 tattgatccatttggatgatcaa 1494 ||||||||||||||||||||||| Sbjct: 745868 tattgatccatttggatgatcaa 745846
>gb|AC187526.3| Pan troglodytes BAC clone CH251-162D7 from chromosome 7, complete sequence Length = 183826 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1750 aaacaacttcagtagtatgcaaaatt 1775 |||||| ||||||||||||||||||| Sbjct: 103187 aaacaaattcagtagtatgcaaaatt 103212
>gb|AC188058.1| Callithrix jacchus chromosome UNK clone CH259-52H12, complete sequence Length = 200527 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1658 acaatgatgatgaagtggatta 1679 |||||||||||||||||||||| Sbjct: 42657 acaatgatgatgaagtggatta 42636
>gb|AC114689.4| Homo sapiens chromosome 18, clone RP11-638L3, complete sequence Length = 177781 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1333 atgtacccacacttgcttgaaa 1354 |||||||||||||||||||||| Sbjct: 20609 atgtacccacacttgcttgaaa 20630
>emb|CR388409.5| Zebrafish DNA sequence from clone DKEY-60P1 in linkage group 18, complete sequence Length = 40942 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1705 atagttaataacaaagtatata 1726 |||||||||||||||||||||| Sbjct: 6680 atagttaataacaaagtatata 6659
>emb|BX908752.8| Zebrafish DNA sequence from clone DKEYP-12C7 in linkage group 18, complete sequence Length = 49348 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1705 atagttaataacaaagtatata 1726 |||||||||||||||||||||| Sbjct: 6903 atagttaataacaaagtatata 6882
>gb|AC005058.1|AC005058 Homo sapiens BAC clone CTB-54D4 from 7q31, complete sequence Length = 182256 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1750 aaacaacttcagtagtatgcaaaatt 1775 |||||| ||||||||||||||||||| Sbjct: 136117 aaacaaattcagtagtatgcaaaatt 136142
>gb|BC122821.1| Bos taurus cDNA clone IMAGE:8056039, containing frame-shift errors Length = 1721 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1441 cctggtacctttgaatatgttgttc 1465 ||||||||||||| ||||||||||| Sbjct: 272 cctggtacctttgcatatgttgttc 248
>ref|NM_001077822.1| Apis mellifera cys-loop ligand-gated ion channel (LOC726970), mRNA gb|DQ667193.1| Apis mellifera cys-loop ligand-gated ion channel subunit mRNA, complete cds Length = 1533 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 atcaagaagaatttaaatggc 156 ||||||||||||||||||||| Sbjct: 1481 atcaagaagaatttaaatggc 1501
>ref|XM_631946.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0219273) mRNA, complete cds Length = 783 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1747 taaaaacaacttcagtagtat 1767 ||||||||||||||||||||| Sbjct: 412 taaaaacaacttcagtagtat 392
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cttgtcgaaaatgcctgcaaa 177 ||||||||||||||||||||| Sbjct: 311195 cttgtcgaaaatgcctgcaaa 311215
>gb|AC158586.8| Mus musculus chromosome 5, clone RP24-372A2, complete sequence Length = 196167 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 545 aagacgtagaaaacctctacaatga 569 |||||||| |||||||||||||||| Sbjct: 36124 aagacgtaaaaaacctctacaatga 36100
>gb|AC118249.11| Mus musculus chromosome 19, clone RP23-397G23, complete sequence Length = 224129 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 aatcaaaacttcaccaagatt 449 ||||||||||||||||||||| Sbjct: 52180 aatcaaaacttcaccaagatt 52200
>gb|AC115046.7| Mus musculus chromosome 5, clone RP24-321O4, complete sequence Length = 157064 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 19 cacacacacaaactaaaaatttcaa 43 ||||||||||| ||||||||||||| Sbjct: 97051 cacacacacaatctaaaaatttcaa 97027
>gb|AC116953.5| Mus musculus BAC clone RP23-119H17 from chromosome 7, complete sequence Length = 193506 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 cttgaattaagcagttacctt 483 ||||||||||||||||||||| Sbjct: 131537 cttgaattaagcagttacctt 131557
>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence Length = 163773 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 545 aagacgtagaaaacctctacaatga 569 |||||||| |||||||||||||||| Sbjct: 70538 aagacgtaaaaaacctctacaatga 70562
>gb|AC122812.4| Mus musculus BAC clone RP23-285M9 from 1, complete sequence Length = 208430 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cacacacacaaactaaaaatt 39 ||||||||||||||||||||| Sbjct: 196692 cacacacacaaactaaaaatt 196672
>gb|AC098737.3| Mus musculus BAC clone RP23-122D16 from 1, complete sequence Length = 212615 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 cacacacacaaactaaaaatt 39 ||||||||||||||||||||| Sbjct: 129538 cacacacacaaactaaaaatt 129558
>emb|CR536615.10| Zebrafish DNA sequence from clone CH211-247C17 in linkage group 1, complete sequence Length = 153688 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1443 tggtacctttgaatatgttgt 1463 ||||||||||||||||||||| Sbjct: 105915 tggtacctttgaatatgttgt 105935
>gb|AC104237.2| Homo sapiens chromosome 11, clone RP11-35J10, complete sequence Length = 164732 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 650 gaagccagcttttctcctatt 670 ||||||||||||||||||||| Sbjct: 70271 gaagccagcttttctcctatt 70291
>gb|AC022021.10| Homo sapiens chromosome 10 clone RP11-351M16, complete sequence Length = 190202 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1723 tataagcataggaaaatatct 1743 ||||||||||||||||||||| Sbjct: 124767 tataagcataggaaaatatct 124747
>emb|BX546468.1| Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3, complete sequence Length = 61422 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 gcacacacacaaactaaaaat 38 ||||||||||||||||||||| Sbjct: 12403 gcacacacacaaactaaaaat 12423
>emb|AL355501.26| Human DNA sequence from clone RP11-360P7 on chromosome 10 Contains the 5' end of the gene for a novel protein (FLJ32798), a zinc finger protein pseudogene and a CpG island, complete sequence Length = 179380 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1723 tataagcataggaaaatatct 1743 ||||||||||||||||||||| Sbjct: 161714 tataagcataggaaaatatct 161734
>emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on chromosome 9, complete sequence Length = 108785 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1726 aagcataggaaaatatctttgtaaa 1750 |||||||||||||||||||| |||| Sbjct: 66896 aagcataggaaaatatctttttaaa 66920
>emb|AL121757.7|HSDJ828H9 Human DNA sequence from clone RP5-828H9 on chromosome 20 Contains two novel genes and two CpG islands, complete sequence Length = 167013 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gcaaattgatgcccaaattgttatc 351 ||||||||||||||| ||||||||| Sbjct: 68909 gcaaattgatgcccagattgttatc 68933
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 actaaaaatttcaatgattga 50 ||||||||||||||||||||| Sbjct: 1651696 actaaaaatttcaatgattga 1651716
>emb|CR385021.12| Zebrafish DNA sequence from clone CH211-200N15 in linkage group 16, complete sequence Length = 148046 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1706 tagttaataacaaagtatata 1726 ||||||||||||||||||||| Sbjct: 46981 tagttaataacaaagtatata 46961
>emb|CR854930.5| Zebrafish DNA sequence from clone CH211-268F11 in linkage group 13, complete sequence Length = 92936 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 aagaaatcaaaacttcaccaa 445 ||||||||||||||||||||| Sbjct: 84401 aagaaatcaaaacttcaccaa 84421
>gb|AC021713.7|AC021713 Homo sapiens chromosome , clone RP11-63D14, complete sequence Length = 148648 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1734 gaaaatatctttgtaaaaaca 1754 ||||||||||||||||||||| Sbjct: 31676 gaaaatatctttgtaaaaaca 31696
>gb|AE009597.1| Brucella melitensis 16M chromosome I, section 154 of 195 of the complete sequence Length = 10526 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cttgtcgaaaatgcctgcaaa 177 ||||||||||||||||||||| Sbjct: 9495 cttgtcgaaaatgcctgcaaa 9475
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cttgtcgaaaatgcctgcaaa 177 ||||||||||||||||||||| Sbjct: 333087 cttgtcgaaaatgcctgcaaa 333107
>gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, complete sequence Length = 174226 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 707 aacttaacaataaagttgaaaacta 731 |||||||||||||| |||||||||| Sbjct: 60369 aacttaacaataaaattgaaaacta 60345
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 851 cttccaaggacagattcaagt 871 ||||||||||||||||||||| Sbjct: 758428 cttccaaggacagattcaagt 758448
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 884 ttagaaactgcggtagaggcc 904 ||||||||||||||||||||| Sbjct: 2358616 ttagaaactgcggtagaggcc 2358596
>emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, complete sequence Length = 205213 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1443 tggtacctttgaatatgttgt 1463 ||||||||||||||||||||| Sbjct: 45856 tggtacctttgaatatgttgt 45836
>emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3, complete sequence Length = 148521 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 gcacacacacaaactaaaaat 38 ||||||||||||||||||||| Sbjct: 12403 gcacacacacaaactaaaaat 12423
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cttgtcgaaaatgcctgcaaa 177 ||||||||||||||||||||| Sbjct: 329455 cttgtcgaaaatgcctgcaaa 329475
>emb|AL691500.7| Mouse DNA sequence from clone RP23-182H15 on chromosome X, complete sequence Length = 196828 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 agaaatcaaaacttcaccaag 446 ||||||||||||||||||||| Sbjct: 78113 agaaatcaaaacttcaccaag 78093 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 380,488,102 Number of extensions: 20314407 Number of successful extensions: 414807 Number of sequences better than 10.0: 41 Number of HSP's gapped: 414807 Number of HSP's successfully gapped: 41 Length of query: 1818 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1795 Effective length of database: 18,503,978,556 Effective search space: 33214641508020 Effective search space used: 33214641508020 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)