ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61j05 |
|---|---|
| Clone Library Name | barley_pub |
>Q5K654:CLF1_PARBR Pre-mRNA-splicing factor CLF1 - Paracoccidioides brasiliensis| Length = 677 Score = 40.0 bits (92), Expect = 0.010 Identities = 18/48 (37%), Positives = 28/48 (58%) Frame = -2 Query: 148 KRAEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYERVLAALP 5 +R ++E +P N ++W FV+ E E G +E R VYER +A +P Sbjct: 306 RRVQYEEQIKENPKNYDIWFDFVRLE-ESSGDVERVRDVYERAIAQMP 352
>Q9HF03:CLF1_CRYNV Pre-mRNA-splicing factor CLF1 - Cryptococcus neoformans var. grubii| (Filobasidiella neoformans var. grubii) Length = 724 Score = 34.3 bits (77), Expect = 0.53 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = -2 Query: 271 IESIGHKYQRLTVEIYRKTQYPDRHIKPMAEQATTEMSP---EAKRAEFESGTAADPGND 101 +E + R E + +Y I + A E S E R+ FE DP + Sbjct: 50 LEELSEFQARKRTEFESRIRYSRDSILAWTKYAQWEASQNEYERSRSVFERALDVDPRSV 109 Query: 100 ELWRRFVKFELEEGGGIEAARGVYERVLAALP 5 +LW ++ EL + I AR +++R + LP Sbjct: 110 DLWIKYTDMEL-KARNINHARNLFDRAITLLP 140
>Q5KNE9:CLF1_CRYNE Pre-mRNA-splicing factor CLF1 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 726 Score = 34.3 bits (77), Expect = 0.53 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = -2 Query: 271 IESIGHKYQRLTVEIYRKTQYPDRHIKPMAEQATTEMSP---EAKRAEFESGTAADPGND 101 +E + R E + +Y I + A E S E R+ FE DP + Sbjct: 50 LEELSEFQARKRTEFESRIRYSRDSILAWTKYAQWEASQNEYERSRSVFERALDVDPRSV 109 Query: 100 ELWRRFVKFELEEGGGIEAARGVYERVLAALP 5 +LW ++ EL + I AR +++R + LP Sbjct: 110 DLWIKYTDMEL-KARNINHARNLFDRAITLLP 140
>Q6C186:CLF1_YARLI Pre-mRNA-splicing factor CLF1 - Yarrowia lipolytica (Candida| lipolytica) Length = 676 Score = 33.9 bits (76), Expect = 0.69 Identities = 20/77 (25%), Positives = 37/77 (48%) Frame = -2 Query: 247 QRLTVEIYRKTQYPDRHIKPMAEQATTEMSPEAKRAEFESGTAADPGNDELWRRFVKFEL 68 +++ +E Y + + P + + +A+ KR E+E + N W R+ ++EL Sbjct: 18 EQILLEAYERKETPLQQTEQIADLEELAEYQGRKRQEYEGALRRNRLNTGQWMRYAQWEL 77 Query: 67 EEGGGIEAARGVYERVL 17 E+ AR V+ER L Sbjct: 78 EQ-REFARARSVFERAL 93
>Q7SGD2:CLF1_NEUCR Pre-mRNA-splicing factor clf-1 - Neurospora crassa| Length = 695 Score = 33.5 bits (75), Expect = 0.90 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -2 Query: 148 KRAEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYERVLAALP 5 +R +E + N ++W F + E E GG ++ R VYER +A +P Sbjct: 310 RRRLYEEQVKENAKNYDVWFDFARLE-ESGGDVDRTREVYERAIAQVP 356 Score = 31.6 bits (70), Expect = 3.4 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -2 Query: 145 RAEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYERVLAALP 5 R+ FE P N +LW R+V+ E+ + I AR + +R + LP Sbjct: 92 RSVFERALDVHPNNTQLWIRYVQAEI-KNRNINHARNLLDRAVTRLP 137
>Q750X3:CLF1_ASHGO Pre-mRNA-splicing factor CLF1 - Ashbya gossypii (Yeast)| (Eremothecium gossypii) Length = 683 Score = 32.7 bits (73), Expect = 1.5 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -2 Query: 148 KRAEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYERVLAALP 5 KR+EFE + + W R+ FE E+ + AR V+ER LA P Sbjct: 45 KRSEFEEALKRNRLDVRQWLRYAAFEYEQ-RDMRRARSVFERALAVAP 91
>Q921Q7:RIN1_MOUSE Ras and Rab interactor 1 - Mus musculus (Mouse)| Length = 763 Score = 32.0 bits (71), Expect = 2.6 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -2 Query: 283 HRLPIESIGHKYQRLTVEIYRKTQYPDRHIKPMAEQATTEMSPEAKRAEFESG 125 HRLP E++ H+ IYR+ + P+ + T PEA E E+G Sbjct: 671 HRLPPEALAHRLPATGYLIYRRAERPETQGAVAEKAKTGSKGPEAGAWEEETG 723
>Q5AED6:CLF1_CANAL Pre-mRNA-splicing factor CLF1 - Candida albicans (Yeast)| Length = 758 Score = 31.6 bits (70), Expect = 3.4 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -2 Query: 154 EAKRAEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYERVL 17 + KR EFE + N W R+ K+E+E AR + ER L Sbjct: 103 QTKRKEFEQHINKNRLNLGQWTRYAKWEIENNHDFPRARSILERAL 148
>P31926:SUSY_VICFA Sucrose synthase - Vicia faba (Broad bean)| Length = 806 Score = 30.8 bits (68), Expect = 5.8 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -2 Query: 256 HKYQRLTVEIYRKTQYPD--RHIKPMAEQATTEMSPEAKRAEFESGTAADPGNDELWRRF 83 H Y+ T+ + + Q PD +H+ AE+ + + PE +EFE RF Sbjct: 185 HSYKGKTLMLNDRIQNPDSLQHVLRKAEEYLSTVDPETPYSEFE-------------HRF 231 Query: 82 VKFELEEGGGIEAAR 38 + LE G G A R Sbjct: 232 QEIGLERGWGDSAER 246
>P97680:RIN1_RAT Ras and Rab interactor 1 - Rattus norvegicus (Rat)| Length = 774 Score = 30.8 bits (68), Expect = 5.8 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = -2 Query: 283 HRLPIESIGHKYQRLTVEIYRKTQYPDRHIKPMAEQATTEMSPEAKRAEFESGTAADPGN 104 HRLP E++ H+ IYR+ + P+ + T PE E E G G Sbjct: 682 HRLPPEALVHRLPTTGYLIYRRAERPETQRAATEKTKTGNERPERGAWEEEKGGLNGEGK 741 Query: 103 DEL 95 E+ Sbjct: 742 SEI 744
>Q6CW36:MCD4_KLULA GPI ethanolamine phosphate transferase 1 - Kluyveromyces lactis| (Yeast) (Candida sphaerica) Length = 919 Score = 30.8 bits (68), Expect = 5.8 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -2 Query: 289 FRHRLPIESIGHKYQRLTVEIYRKTQYPDRHIKPMAEQ 176 F H L ++ GH Y+ + E Y +Y D+ +K + E+ Sbjct: 216 FLHLLGCDTAGHSYRPYSAEYYDNVKYIDKEVKLLVEK 253
>P17886:CRN_DROME Protein crooked neck - Drosophila melanogaster (Fruit fly)| Length = 702 Score = 30.8 bits (68), Expect = 5.8 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = -2 Query: 202 RHIKPMAEQATTEMSPEAKRA-EFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYE 26 +H K ++A E +KR ++E AA+P N + W +++ +E G + R YE Sbjct: 291 KHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRL-IEAEGDRDQIRETYE 349 Query: 25 RVLAALP 5 R ++ +P Sbjct: 350 RAISNVP 356
>O65026:SUSY_MEDSA Sucrose synthase - Medicago sativa (Alfalfa)| Length = 805 Score = 30.4 bits (67), Expect = 7.6 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -2 Query: 256 HKYQRLTVEIYRKTQYPD--RHIKPMAEQATTEMSPEAKRAEFESGTAADPGNDELWRRF 83 H Y+ T+ + + Q PD +H+ AE+ + + PE +EFE RF Sbjct: 185 HSYKGKTLMLNDRIQNPDSLQHVLRKAEEYLSTIDPETPYSEFE-------------HRF 231 Query: 82 VKFELEEGGGIEAAR 38 + LE G G A R Sbjct: 232 QEIGLERGWGDTAER 246
>Q8K2Z2:PRP39_MOUSE Pre-mRNA-processing factor 39 - Mus musculus (Mouse)| Length = 625 Score = 30.4 bits (67), Expect = 7.6 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Frame = -2 Query: 301 SDMEFRHRLPIESIGHKYQR------LTVEIY-RKTQYPDRHIKPMAEQATTEMSPEAKR 143 +D+E RH I+ Y+R L+V+++ + ++P ++ T + + Sbjct: 94 ADLEKRHD-NIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEH 152 Query: 142 AEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVYERVL 17 A +GT D +D+LW ++ +E E+ G + VY+R+L Sbjct: 153 AVLAAGT--DFRSDKLWEMYINWENEQ-GNLREVTAVYDRIL 191
>Q6C0Z3:MCD4_YARLI GPI ethanolamine phosphate transferase 1 - Yarrowia lipolytica| (Candida lipolytica) Length = 932 Score = 30.4 bits (67), Expect = 7.6 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -2 Query: 289 FRHRLPIESIGHKYQRLTVEIYRKTQYPDRHIKPMAEQ 176 F H L I++ GH Y+ + E Y +Y D +I+ + ++ Sbjct: 217 FLHLLGIDTAGHSYRPYSAEYYDNIKYIDENIEKLVDK 254
>Q6BSP7:CLF1_DEBHA Pre-mRNA-splicing factor CLF1 - Debaryomyces hansenii (Yeast)| (Torulaspora hansenii) Length = 714 Score = 30.0 bits (66), Expect = 9.9 Identities = 17/64 (26%), Positives = 32/64 (50%) Frame = -2 Query: 208 PDRHIKPMAEQATTEMSPEAKRAEFESGTAADPGNDELWRRFVKFELEEGGGIEAARGVY 29 P + I+ + E + +++ KR E+E + N W R+ K+E++ AR ++ Sbjct: 36 PKQSIQDLDELRSFQLT---KRKEYEQQLNKNRLNFGQWLRYAKWEVKHNHDFPRARSIF 92 Query: 28 ERVL 17 ER L Sbjct: 93 ERAL 96 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 122,247,089 Number of extensions: 2566631 Number of successful extensions: 5761 Number of sequences better than 10.0: 16 Number of HSP's gapped: 5759 Number of HSP's successfully gapped: 17 Length of query: 249 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 139 Effective length of database: 70,513,989 Effective search space: 9801444471 Effective search space used: 9801444471 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
