ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf63o23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os07g28460:12007.t02537:unspliced-genomic transposon pro... 34 1.3
2LOC_Os01g26788:12001.t02363:unspliced-genomic wall-associate... 33 1.8
3LOC_Os10g37280:12010.t02995:unspliced-genomic sphingosine ki... 33 2.5
4LOC_Os07g38400:12007.t03505:unspliced-genomic SV2 related pr... 32 4.7
5LOC_Os09g11240:12009.t00914:unspliced-genomic expressed protein 31 6.5
6LOC_Os02g02480:12002.t00147:unspliced-genomic DNA binding pr... 29 8.3
7LOC_Os08g02354:12008.t00130:unspliced-genomic expressed protein 31 9.0

>LOC_Os07g28460:12007.t02537:unspliced-genomic transposon protein, putative, unclassified, expressed|
          Length = 6870
 Score = 33.6 bits (67), Expect = 1.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2 / -3

                             
Query: 394  CTCCDILSLEWFWIVLH 344
            CTCC ++++ W W ++H
Sbjct: 1981 CTCCPVVTIHWKWYLIH 1931



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>LOC_Os01g26788:12001.t02363:unspliced-genomic wall-associated kinase 1, putative|
          Length = 2705

 Score = 33.1 bits (66), Expect = 1.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2 / +1

                                           
Query: 565 CSSGTDFKTREMLCYPLQAHDHDHGSVLWIVH 470
           C  GT F   E  C P Q H+  H  V+ I+H
Sbjct: 544 CPYGTYFDPVETKCIPTQPHERRHNIVMGILH 639



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>LOC_Os10g37280:12010.t02995:unspliced-genomic sphingosine kinase, putative, expressed|
          Length = 8669

 Score = 32.7 bits (65), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2 / +3

                                  
Query: 532  MLCYPLQAHDHDHGSVLWIVHV 467
            MLCYP  A  H  GS+  +VH+
Sbjct: 3843 MLCYPFVARSHFEGSLALVVHI 3908



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>LOC_Os07g38400:12007.t03505:unspliced-genomic SV2 related protein, putative, expressed|
          Length = 3978

 Score = 31.8 bits (63), Expect = 4.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2 / +3

                          
Query: 409  CLWGTCTCCDILSL 368
            C WG+C CC +LSL
Sbjct: 2628 CHWGSCFCCPVLSL 2669



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>LOC_Os09g11240:12009.t00914:unspliced-genomic expressed protein|
          Length = 2798

 Score = 31.3 bits (62), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3 / -3

                                         
Query: 75  QHRVELVAGVAATSSPPRSCASKRTQEGFH 164
           +HR  LVA  AAT++P R+   +R  E  H
Sbjct: 414 RHRCRLVAVAAATATPGRAAVHRRPPEQHH 325



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>LOC_Os02g02480:12002.t00147:unspliced-genomic DNA binding protein, putative, expressed|
          Length = 3378

 Score = 28.6 bits (56), Expect(2) = 8.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3 / +1

                                    
Query: 549  TSKQGKCYATRCRPTITTTAQSSG 478
            +S    C  +RC P+I TT  SSG
Sbjct: 2113 SSPSSSCIPSRCIPSIYTTLSSSG 2184



 Score = 23.5 bits (45), Expect(2) = 8.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2 / +1

                            
Query: 400  GTCTCCDILSLEWFWI 353
            G+C C  IL+L W ++
Sbjct: 2542 GSCDCAIILALAWQYL 2589



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>LOC_Os08g02354:12008.t00130:unspliced-genomic expressed protein|
          Length = 10398

 Score = 30.9 bits (61), Expect = 9.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2 / +3

                                          
Query: 517  LQAHDHDHGSVLWIVHVKAICLLVVLPRQL 428
            L+A     GSV WI++++ I + ++LP ++
Sbjct: 2862 LRAKASSSGSVQWIIYIQFILIFIILPLKI 2951


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 160,332,530
Number of extensions: 2000594
Number of successful extensions: 9996
Number of sequences better than 10.0: 7
Length of query: 212
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 164
Effective length of database: 52,912,542
Effective search space: 8677656888
Effective search space used: 8677656888
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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