ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf66i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os03g48110:12003.t04171:unspliced-genomic expressed protein 193 1e-48
2LOC_Os12g08800:12012.t00761:unspliced-genomic las1-like fami... 35 0.39
3LOC_Os01g65200:12001.t05886:unspliced-genomic peptide transp... 32 0.41
4LOC_Os03g22400:12003.t01991:unspliced-genomic sentrin-specif... 33 2.7
5LOC_Os11g45920:12011.t004408:unspliced-genomic OsWRKY63 - Su... 32 3.6
6LOC_Os02g06950:12002.t00592:unspliced-genomic salicylic acid... 32 3.6
7LOC_Os01g69050:12001.t06259:unspliced-genomic lysine ketoglu... 32 3.7
8LOC_Os01g68230:12001.t06830:unspliced-genomic expressed protein 30 6.8

>LOC_Os03g48110:12003.t04171:unspliced-genomic expressed protein|
          Length = 4227
 Score =  193 bits (416), Expect = 1e-48
 Identities = 74/87 (85%), Positives = 80/87 (91%)
 Frame = +3 / +1

                                                                       
Query: 114 MGFIMEFAENLILRLMEDPEQRDEAQRAHVYRMKERCERTKAAWALPLRPYGFWTFDHFN 293
           MGF+MEFAENLILR+MEDP +RD AQR HVYRMKERCERTKAAW+LPLRPYGFWTFD FN
Sbjct: 94  MGFVMEFAENLILRMMEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFN 273

                                      
Query: 294 SQLSWDPQISQAAGRRDPYDDLLARHA 374
           SQLSWDPQIS A GRRDPYDD+L RH+
Sbjct: 274 SQLSWDPQISHAPGRRDPYDDVLHRHS 354



 Score = 77.6 bits (163), Expect(2) = 4e-19
 Identities = 33/37 (89%), Positives = 33/37 (89%)
 Frame = -1 / -2

                                                
Query: 322 LIWGSQESWELKWSKVQKP*GRSGSAQAALVRSHRSF 212
           LIWGSQESWELK SKVQKP*GRSG   AALVRSHRSF
Sbjct: 302 LIWGSQESWELKRSKVQKP*GRSGRLHAALVRSHRSF 192



 Score = 36.8 bits (74), Expect(2) = 4e-19
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3 / -1

                           
Query: 161 HQPQDQVLRELHDESH 114
           H PQDQVLRELH E+H
Sbjct: 141 HHPQDQVLRELHHETH 94



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>LOC_Os12g08800:12012.t00761:unspliced-genomic las1-like family protein, expressed|
          Length = 5513

 Score = 35.4 bits (71), Expect = 0.39
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3 / -2

                                                         
Query: 225  ERTKAAWALPLRPYGFWTFDHFNSQLSWDPQISQAAGRRDPYDDL 359
            E T  +W  P++P  F +F+   S  +W+ + S  AGR   Y  +
Sbjct: 4492 ESTPISWTTPMQPESFNSFNFVTSHRTWELKSSTLAGRLALYSPI 4358



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>LOC_Os01g65200:12001.t05886:unspliced-genomic peptide transporter PTR2, putative, expressed|
          Length = 2749

 Score = 32.2 bits (64), Expect(2) = 0.41
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1 / -3

                                                
Query: 628  FMEQDRKSADTKHFWYLAEQEVCRSNHIQHMNQLGQ 521
            + +   K+   +  WYL  +E  ++NH +H++Q  Q
Sbjct: 2168 YAQVQSKAQTAQTIWYLVIEEFLQANHCEHISQTSQ 2061



 Score = 24.4 bits (47), Expect(2) = 0.41
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1 / -1

                                     
Query: 307 QESWELKWSKVQKP*GRSGSAQAALV 230
           +E+   +WS  +   GR GSA A++V
Sbjct: 133 REAGRPRWSTAEAGGGRRGSAPASMV 56



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>LOC_Os03g22400:12003.t01991:unspliced-genomic sentrin-specific protease 2, putative, expressed|
          Length = 4694

 Score = 32.7 bits (65), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3 / +1

                                               
Query: 552  LLRQTSCSARYQKCFVSADFLSCSMKLSIISLHTK 656
            L+R   C    Q    S   L CS+K+S ISLH+K
Sbjct: 2452 LIRDICCGNGRQFYVFSLSLLHCSLKISKISLHSK 2556



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>LOC_Os11g45920:12011.t004408:unspliced-genomic OsWRKY63 - Superfamily of rice TFs having WRKY and zinc finger|
           domains
          Length = 6659

 Score = 32.2 bits (64), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3 / +1

                                                 
Query: 438 AASKIRRTHFLKMTVITFPSVSSILSLNCPSWFMC*MW 551
           AA   R  +F K  V+ +     +L+LNC ++F C  W
Sbjct: 418 AAGHTR*QYFNKAEVVVYVCTLIVLTLNCRAYFRCTHW 531



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>LOC_Os02g06950:12002.t00592:unspliced-genomic salicylic acid-induced protein 19, putative|
          Length = 6635

 Score = 32.2 bits (64), Expect = 3.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3 / -1

                                                    
Query: 450  IRRTHFLKMTVITFPSVSSILSLNCPSWFMC*MWLLRQTS 569
            I + HFL + ++TFP+   +L +    +F  * WL + T+
Sbjct: 3965 ISQRHFLSILLVTFPTKKLLLQVLPNDFFFQ*RWLSKSTA 3846



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>LOC_Os01g69050:12001.t06259:unspliced-genomic lysine ketoglutarate reductase trans-splicing related 1, putative,|
            expressed
          Length = 5259

 Score = 32.2 bits (64), Expect = 3.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1 / +3

                                                            
Query: 661  FFFVCNEIIESFMEQDRKSADTKHFWYLAEQEVCRSNHIQHMNQLGQF 518
            FFFVC ++I   +   +K  D  +  Y   Q    S +   MN + +F
Sbjct: 3954 FFFVCQKLIHIVIYFFKKKFDNSYHIYAISQNCINSTYHFGMNSISEF 4097



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>LOC_Os01g68230:12001.t06830:unspliced-genomic expressed protein|
          Length = 3353

 Score = 30.4 bits (60), Expect(2) = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3 / +3

                                        
Query: 453 RRTHFLKMTVITFPSVSSILSLNCPSWFM 539
           + TH     V   PS+SS+  LN P+WFM
Sbjct: 591 QNTHVNGSKVQKTPSLSSLGHLNLPTWFM 677



 Score = 22.1 bits (42), Expect(2) = 6.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1 / +1

                     
Query: 16  DGDGGRRHTH 45
           +G+G RRH H
Sbjct: 211 EGEGARRHNH 240


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 174,874,353
Number of extensions: 2302772
Number of successful extensions: 9226
Number of sequences better than 10.0: 8
Length of query: 222
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 174
Effective length of database: 52,912,542
Effective search space: 9206782308
Effective search space used: 9206782308
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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