| Clone Name | FLbaf66i16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829093.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005N03, full insert sequence Length = 553 Score = 293 bits (148), Expect = 4e-76 Identities = 184/196 (93%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 185 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 19 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 78 Query: 186 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 245 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 79 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 138 Query: 246 gcgctcccgctccgcccctacggcttctggaccttcgaccacttcaactcccagctctcc 305 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 139 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 198 Query: 306 tgggacccccagatca 321 ||||| |||||||||| Sbjct: 199 tgggatccccagatca 214
>ref|NM_001057465.1| Oryza sativa (japonica cultivar-group) Os03g0685900 (Os03g0685900) mRNA, complete cds Length = 583 Score = 293 bits (148), Expect = 4e-76 Identities = 184/196 (93%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 185 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 50 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 109 Query: 186 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 245 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 110 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 169 Query: 246 gcgctcccgctccgcccctacggcttctggaccttcgaccacttcaactcccagctctcc 305 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 170 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 229 Query: 306 tgggacccccagatca 321 ||||| |||||||||| Sbjct: 230 tgggatccccagatca 245
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 293 bits (148), Expect = 4e-76 Identities = 184/196 (93%) Strand = Plus / Minus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 185 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 105281 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 105222 Query: 186 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 245 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 105221 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 105162 Query: 246 gcgctcccgctccgcccctacggcttctggaccttcgaccacttcaactcccagctctcc 305 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 105161 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 105102 Query: 306 tgggacccccagatca 321 ||||| |||||||||| Sbjct: 105101 tgggatccccagatca 105086
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 293 bits (148), Expect = 4e-76 Identities = 184/196 (93%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 185 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 27164933 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 27164992 Query: 186 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 245 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 27164993 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 27165052 Query: 246 gcgctcccgctccgcccctacggcttctggaccttcgaccacttcaactcccagctctcc 305 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 27165053 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 27165112 Query: 306 tgggacccccagatca 321 ||||| |||||||||| Sbjct: 27165113 tgggatccccagatca 27165128 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 caaaataaggagaactcattt 466 ||||||||||||||||||||| Sbjct: 35366163 caaaataaggagaactcattt 35366183
>dbj|AK062981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F03, full insert sequence Length = 583 Score = 293 bits (148), Expect = 4e-76 Identities = 184/196 (93%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 185 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 50 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 109 Query: 186 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 245 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 110 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 169 Query: 246 gcgctcccgctccgcccctacggcttctggaccttcgaccacttcaactcccagctctcc 305 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 170 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 229 Query: 306 tgggacccccagatca 321 ||||| |||||||||| Sbjct: 230 tgggatccccagatca 245
>gb|AY106192.1| Zea mays PCO072441 mRNA sequence Length = 708 Score = 206 bits (104), Expect = 7e-50 Identities = 182/208 (87%) Strand = Plus / Plus Query: 114 atgggattcatcatggagttcgcggagaacctgatcctgcggctgatggaggacccggag 173 ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 151 atgggtttcatcatggacttcgcggagaatctgatcctccgtctgatggaggacccggac 210 Query: 174 cagcgggacgaggcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcacc 233 |||| ||| ||| | ||||| ||| |||||| |||||||||||||||||||||||| Sbjct: 211 aagcgcgaccaggttcggcgggagcatgtctacaagatgaaggagcggtgcgagcgcact 270 Query: 234 aaggcggcctgggcgctcccgctccgcccctacggcttctggaccttcgaccacttcaac 293 |||||||| ||| ||||| || |||||||||||||||||||||||||||| ||||||| Sbjct: 271 aaggcggcgtggagcctccctctgcgcccctacggcttctggaccttcgaccgcttcaac 330 Query: 294 tcccagctctcctgggacccccagatca 321 || |||||||||||||| |||||||||| Sbjct: 331 tcgcagctctcctgggatccccagatca 358
>gb|BT016356.1| Zea mays clone Contig189 mRNA sequence Length = 636 Score = 190 bits (96), Expect = 4e-45 Identities = 180/208 (86%) Strand = Plus / Plus Query: 114 atgggattcatcatggagttcgcggagaacctgatcctgcggctgatggaggacccggag 173 ||||| ||||||||||| ||||||||||| ||||||| || ||||||||||||||||| Sbjct: 97 atgggtttcatcatggacttcgcggagaatatgatcctccgtctgatggaggacccggac 156 Query: 174 cagcgggacgaggcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcacc 233 |||| ||| ||| | ||||| ||| |||||| ||||||||||||||||||||||| Sbjct: 157 aagcgcgaccaggttcggcgggagcatgtctacaaaatgaaggagcggtgcgagcgcact 216 Query: 234 aaggcggcctgggcgctcccgctccgcccctacggcttctggaccttcgaccacttcaac 293 |||||||| ||| ||||| || |||||||||||||||||||||||||||| ||||||| Sbjct: 217 aaggcggcgtggagcctccctctgcgcccctacggcttctggaccttcgaccgcttcaac 276 Query: 294 tcccagctctcctgggacccccagatca 321 || |||||||||||||| |||||||||| Sbjct: 277 tcgcagctctcctgggatccccagatca 304
>gb|AY389672.1| Hyacinthus orientalis unknown mRNA Length = 621 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 256 tccgcccctacggcttctggaccttcgaccacttcaactcccagctctcctgggaccccc 315 ||||||| ||||| |||||||||||||||| |||||| |||||||| |||||||| | | Sbjct: 220 tccgcccttacggattctggaccttcgaccggttcaacgcccagctcgcctgggacgctc 279 Query: 316 agatca 321 |||||| Sbjct: 280 agatca 285 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggagga 166 ||||||||||| ||||| |||||||| || |||||||||| Sbjct: 90 atggagttcgctgagaatctgatccttcgtatgatggagga 130
>gb|AY389729.1| Hyacinthus orientalis At1g67350-like protein mRNA, complete cds Length = 628 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 256 tccgcccctacggcttctggaccttcgaccacttcaactcccagctctcctgggaccccc 315 ||||||| ||||| |||||||||||||||| |||||| |||||||| |||||||| | | Sbjct: 215 tccgcccttacggattctggaccttcgaccggttcaacgcccagctcgcctgggacgctc 274 Query: 316 agatca 321 |||||| Sbjct: 275 agatca 280 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggagga 166 ||||||||||| ||||| |||||||| || |||||||||| Sbjct: 85 atggagttcgctgagaatctgatccttcgtatgatggagga 125
>gb|AY389726.1| Hyacinthus orientalis unknown mRNA Length = 650 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 258 cgcccctacggcttctggaccttcgaccacttcaactcccagctctcctgggacccccag 317 ||||| ||||| |||||||||||||||| |||||| | |||||| |||||||| | ||| Sbjct: 218 cgcccgtacggattctggaccttcgaccggttcaacgcacagctcgcctgggactctcag 277 Query: 318 atca 321 |||| Sbjct: 278 atca 281 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 126 atggagttcgcggagaacctgatcctgcggctgatggagga 166 ||||||||||| ||||| |||||||| || |||||||||| Sbjct: 86 atggagttcgctgagaatctgatccttcgtatgatggagga 126
>gb|AF366446.1|AF366446 Allium cepa clone AGF125 maintainer line sequence Length = 498 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 119 attcatcatggagttcgcggagaacctgatcct 151 |||||| |||||||||||||||||||| ||||| Sbjct: 468 attcataatggagttcgcggagaacctaatcct 436
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 48.1 bits (24), Expect = 0.040 Identities = 24/24 (100%) Strand = Plus / Plus Query: 143 cctgatcctgcggctgatggagga 166 |||||||||||||||||||||||| Sbjct: 1092745 cctgatcctgcggctgatggagga 1092768
>dbj|AB189463.1| Rhodobacter sphaeroides f. sp. denitrificans treY gene for maltoologosyl trehalose synthase, complete cds Length = 2616 Score = 48.1 bits (24), Expect = 0.040 Identities = 24/24 (100%) Strand = Plus / Plus Query: 143 cctgatcctgcggctgatggagga 166 |||||||||||||||||||||||| Sbjct: 867 cctgatcctgcggctgatggagga 890
>gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, complete sequence Length = 182102 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtgc 542 |||||||||||| |||||||||||||| Sbjct: 66847 ttgaactgcccttgctggttcatgtgc 66821
>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence Length = 191036 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 186509 ttgaactgcccttgctggttcatgtg 186484
>gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 242055 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 58206 ttgaactgcccttgctggttcatgtg 58181
>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence Length = 146015 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 131826 ttgaactgcccttgctggttcatgtg 131851
>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete sequence Length = 160122 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 31082 ttgaactgcccttgctggttcatgtg 31057
>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence Length = 212387 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 177359 ttgaactgcccttgctggttcatgtg 177334
>dbj|AK138696.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430014J21 product:unclassifiable, full insert sequence Length = 1916 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 758 ttgaactgcccttgctggttcatgtg 783
>emb|AL807806.6| Mouse DNA sequence from clone RP23-67K19 on chromosome X, complete sequence Length = 128018 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 91412 ttgaactgcccttgctggttcatgtg 91437
>gb|AC114766.5| Homo sapiens BAC clone RP11-393M11 from 4, complete sequence Length = 77880 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 gaggaagaagacacacacacac 47 |||||||||||||||||||||| Sbjct: 76634 gaggaagaagacacacacacac 76613
>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence Length = 166595 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 gaggaagaagacacacacacac 47 |||||||||||||||||||||| Sbjct: 754 gaggaagaagacacacacacac 733
>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete sequence Length = 220233 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 123062 ttgaactgcccttgctggttcatgtg 123087
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence Length = 193714 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 136488 ttgaactgcccttgctggttcatgtg 136463
>emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chromosome 11 Contains the 5' end of the AF424697 gene for DNA sequence AF424697 (FLJ21950, KIAA0903-like) and a CpG island, complete sequence Length = 119258 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 95647 ttgaactgcccttgctggttcatgtg 95672
>emb|BX005281.15| Mouse DNA sequence from clone RP23-268A11 on chromosome X, complete sequence Length = 60173 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 11594 ttgaactgcccttgctggttcatgtg 11569
>gb|AC025436.2|AC025436 Homo sapiens chromosome 5 clone CTC-429E15, complete sequence Length = 184662 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 600 tctgctgattttctgtcttgtt 621 |||||||||||||||||||||| Sbjct: 160128 tctgctgattttctgtcttgtt 160107
>gb|AC005754.1|AC005754 Homo sapiens chromosome 5, BAC clone 34j15 (LBNL H169), complete sequence Length = 125927 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 600 tctgctgattttctgtcttgtt 621 |||||||||||||||||||||| Sbjct: 32608 tctgctgattttctgtcttgtt 32629
>emb|AL731823.19| Mouse DNA sequence from clone RP23-60B2 on chromosome X, complete sequence Length = 102565 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 23303 ttgaactgcccttgctggttcatgtg 23328
>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence Length = 236246 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 1833 ttgaactgcccttgctggttcatgtg 1808
>emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on chromosome 2, complete sequence Length = 210821 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 142334 ttgaactgcccttgctggttcatgtg 142309
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence Length = 224088 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatgtg 541 |||||||||||| ||||||||||||| Sbjct: 145715 ttgaactgcccttgctggttcatgtg 145740
>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195335 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 ttcaataatctcattgcacac 652 ||||||||||||||||||||| Sbjct: 24407 ttcaataatctcattgcacac 24387
>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence Length = 191050 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 517 tgaactgccctagctggttcatgtg 541 ||||||||||| ||||||||||||| Sbjct: 63843 tgaactgcccttgctggttcatgtg 63867
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 caaaataaggagaactcattt 466 ||||||||||||||||||||| Sbjct: 154852 caaaataaggagaactcattt 154872
>gb|AC116993.2| Homo sapiens chromosome 1 clone RP4-561P1, complete sequence Length = 101893 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 actcccagctctcctgggacc 312 ||||||||||||||||||||| Sbjct: 95625 actcccagctctcctgggacc 95645
>emb|AL138765.18| Human DNA sequence from clone RP11-34E5 on chromosome 10 Contains the SMBP gene for SM-11044 binding protein (SMBP)(EP70-P-iso), the TLL2 gene for tolloid-like 2, a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1)(B23, NPM, NUMATRIN) pseudogene, a ribosomal protein S2 (RPS2)(LLREP3) pseudogene, the 3' end of the gene for a novel protein (possible ortholog of mouse phosphoinositide-3-kinase adaptor protein 1 (Pik3ap1)) and two CpG islands, complete sequence Length = 162820 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 aagaagacacacacacacgca 50 ||||||||||||||||||||| Sbjct: 31069 aagaagacacacacacacgca 31089
>emb|BX470121.7| Zebrafish DNA sequence from clone DKEY-267G17 in linkage group 7, complete sequence Length = 97476 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 acacacacacacgcagatcga 56 ||||||||||||||||||||| Sbjct: 50322 acacacacacacgcagatcga 50302
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 caaaataaggagaactcattt 466 ||||||||||||||||||||| Sbjct: 92363 caaaataaggagaactcattt 92343
>gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180124 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 ttcaataatctcattgcacac 652 ||||||||||||||||||||| Sbjct: 110437 ttcaataatctcattgcacac 110417
>gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206003 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 517 tgaactgccctagctggttcatgtg 541 ||||||||||| ||||||||||||| Sbjct: 76078 tgaactgcccttgctggttcatgtg 76054
>emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete sequence Length = 166299 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 aagaagacacacacacacgca 50 ||||||||||||||||||||| Sbjct: 128070 aagaagacacacacacacgca 128050
>ref|XM_418778.2| PREDICTED: Gallus gallus zinc and ring finger 2 (ZNRF2), mRNA Length = 4652 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 gttttgtatctgctgatttt 611 |||||||||||||||||||| Sbjct: 4438 gttttgtatctgctgatttt 4457
>emb|CT836936.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110E07, full insert sequence Length = 2282 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 gaactcatttcctcaaaatg 476 |||||||||||||||||||| Sbjct: 2037 gaactcatttcctcaaaatg 2056
>gb|AC155906.2| Mus musculus BAC clone RP23-460M14 from chromosome 9, complete sequence Length = 181623 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 ctgattttctgtcttgttcc 623 |||||||||||||||||||| Sbjct: 26678 ctgattttctgtcttgttcc 26659
>gb|AC165317.9| Mus musculus chromosome 5, clone RP23-265O20, complete sequence Length = 191270 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ggaagaagacacacacacac 47 |||||||||||||||||||| Sbjct: 29953 ggaagaagacacacacacac 29934
>ref|XM_882793.1| PREDICTED: Bos taurus hypothetical protein LOC617405 (LOC617405), mRNA Length = 780 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 gagcagcgggacgaggcgcagcgggcgc 198 ||||||||||| |||| ||||||||||| Sbjct: 237 gagcagcgggaggaggagcagcgggcgc 210
>gb|AC150993.4| Bos taurus BAC CH240-186K21 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aggaagaagacacacacaca 46 |||||||||||||||||||| Sbjct: 43663 aggaagaagacacacacaca 43644
>gb|AC147028.3| Pan troglodytes BAC clone RP43-93F8 from 7, complete sequence Length = 170936 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ggaagaagacacacacacac 47 |||||||||||||||||||| Sbjct: 120156 ggaagaagacacacacacac 120175
>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence Length = 230218 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 ttgaactgccctagctggttcatg 539 |||||||||||| ||||||||||| Sbjct: 221323 ttgaactgccctcgctggttcatg 221300
>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence Length = 169274 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 ttgaactgccctagctggttcatg 539 |||||||||||| ||||||||||| Sbjct: 149317 ttgaactgccctcgctggttcatg 149340
>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence Length = 208678 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 gggacggaggaagaagacacacacacac 47 |||| |||||||||||||||| |||||| Sbjct: 152285 gggagggaggaagaagacacagacacac 152312
>ref|XM_759197.1| Theileria parva strain Muguga chromosome 4 hypothetical protein (TP04_0654) partial mRNA Length = 1776 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tttcatcgattttatccttg 518 |||||||||||||||||||| Sbjct: 862 tttcatcgattttatccttg 843
>gb|AC164159.2| Mus musculus BAC clone RP23-339C17 from chromosome 17, complete sequence Length = 206481 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 agaagacacacacacacgca 50 |||||||||||||||||||| Sbjct: 166338 agaagacacacacacacgca 166357
>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193626 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 gcaaaataaggagaactcat 464 |||||||||||||||||||| Sbjct: 44804 gcaaaataaggagaactcat 44823
>gb|BC102654.1| Bos taurus cDNA clone IMAGE:7956015, partial cds Length = 1186 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 gagcagcgggacgaggcgcagcgggcgc 198 ||||||||||| |||| ||||||||||| Sbjct: 13 gagcagcgggaggaggagcagcgggcgc 40
>gb|AC004261.3| Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence Length = 91539 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gaagaagacacacacacacg 48 |||||||||||||||||||| Sbjct: 68865 gaagaagacacacacacacg 68884
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 aaaataaggagaactcattt 466 |||||||||||||||||||| Sbjct: 22402936 aaaataaggagaactcattt 22402955
>emb|AL035696.14|HS416J7 Human DNA sequence from clone RP3-416J7 on chromosome 6p25 Contains a novel pseudogene, parts of 2 novel genes and a CpG island, complete sequence Length = 124034 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ggaggaagaagacacacaca 44 |||||||||||||||||||| Sbjct: 44717 ggaggaagaagacacacaca 44698
>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence Length = 191204 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ctgtgattacattcccttcc 497 |||||||||||||||||||| Sbjct: 64371 ctgtgattacattcccttcc 64352
>gb|AC026403.4| Homo sapiens chromosome 5 clone CTB-63M22, complete sequence Length = 138536 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 aggaagaagacacacacacacgca 50 ||||| |||||||||||||||||| Sbjct: 28747 aggaaaaagacacacacacacgca 28724
>emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in linkage group 16, complete sequence Length = 250962 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 agaagacacacacacacgca 50 |||||||||||||||||||| Sbjct: 90795 agaagacacacacacacgca 90814
>gb|AC018646.3|AC018646 Homo sapiens chromosome 7 clone RP11-344L16, complete sequence Length = 184718 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ggaagaagacacacacacac 47 |||||||||||||||||||| Sbjct: 43696 ggaagaagacacacacacac 43715
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1144B06 Length = 133689 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 aaaataaggagaactcattt 466 |||||||||||||||||||| Sbjct: 99919 aaaataaggagaactcattt 99938
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence Length = 170850 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ggaagaagacacacacacac 47 |||||||||||||||||||| Sbjct: 4736 ggaagaagacacacacacac 4755
>emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chromosome 11, complete sequence Length = 145244 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 608 ttttctgtcttgttccatgaagct 631 |||||| ||||||||||||||||| Sbjct: 56308 ttttctatcttgttccatgaagct 56331
>ref|XM_310742.2| Anopheles gambiae str. PEST ENSANGP00000010052 (ENSANGG00000007563), partial mRNA Length = 1491 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 atgggattcatcatggagtt 133 |||||||||||||||||||| Sbjct: 827 atgggattcatcatggagtt 808
>gb|AC156791.1| Mus musculus BAC clone RP24-250L13 from 9, complete sequence Length = 165073 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 ctgattttctgtcttgttcc 623 |||||||||||||||||||| Sbjct: 150031 ctgattttctgtcttgttcc 150012
>gb|AC004842.2|AC004842 Homo sapiens PAC clone RP4-609N19 from 7p22, complete sequence Length = 120000 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ggaggaagaagacacacaca 44 |||||||||||||||||||| Sbjct: 13179 ggaggaagaagacacacaca 13198
>emb|CR450781.12| Zebrafish DNA sequence from clone DKEY-20O6 in linkage group 24, complete sequence Length = 215010 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 agaagacacacacacacgca 50 |||||||||||||||||||| Sbjct: 31626 agaagacacacacacacgca 31607
>emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, complete sequence Length = 149603 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 agaagacacacacacacgca 50 |||||||||||||||||||| Sbjct: 53438 agaagacacacacacacgca 53419
>emb|AL929347.8| Human DNA sequence from clone RP3-433O3 on chromosome 22, complete sequence Length = 128374 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ggaggaagaagacacacaca 44 |||||||||||||||||||| Sbjct: 115518 ggaggaagaagacacacaca 115499
>emb|AL807793.7| Mouse DNA sequence from clone RP23-33N15 on chromosome 2, complete sequence Length = 221903 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ggaagaagacacacacacac 47 |||||||||||||||||||| Sbjct: 126584 ggaagaagacacacacacac 126565
>gb|AY675212.1| Oryzias latipes hypothetical protein mRNA, partial cds Length = 681 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cctgatcctgcggctgatgg 162 |||||||||||||||||||| Sbjct: 192 cctgatcctgcggctgatgg 173 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 105,813,239 Number of extensions: 15764647 Number of successful extensions: 294553 Number of sequences better than 10.0: 75 Number of HSP's gapped: 294553 Number of HSP's successfully gapped: 79 Length of query: 667 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 645 Effective length of database: 18,508,616,841 Effective search space: 11938057862445 Effective search space used: 11938057862445 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)