| Clone Name | FLbaf69g10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT033841.18| Zebrafish DNA sequence from clone RP71-84K24 in linkage group 3, complete sequence Length = 162408 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 735 tcaaatctgatccttactttgt 756 |||||||||||||||||||||| Sbjct: 101134 tcaaatctgatccttactttgt 101155
>gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete sequence Length = 112268 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 665 gatgtgaaagaaattggagtgt 686 |||||||||||||||||||||| Sbjct: 22031 gatgtgaaagaaattggagtgt 22052
>gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete sequence Length = 106244 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 665 gatgtgaaagaaattggagtgt 686 |||||||||||||||||||||| Sbjct: 84213 gatgtgaaagaaattggagtgt 84192
>gb|AC188586.3| Callithrix jacchus BAC clone CH259-4H12 from chromosome unknown, complete sequence Length = 251178 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1199 ctatactcctatttaaaaaaa 1219 ||||||||||||||||||||| Sbjct: 48839 ctatactcctatttaaaaaaa 48859
>ref|XM_001025969.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_01104940) mRNA, complete cds Length = 1998 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1203 actcctatttaaaaaaattaa 1223 ||||||||||||||||||||| Sbjct: 460 actcctatttaaaaaaattaa 480
>ref|XM_425932.2| PREDICTED: Gallus gallus similar to PPM2C protein (LOC428372), mRNA Length = 2035 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tgcactattgatttcatgaat 487 ||||||||||||||||||||| Sbjct: 1912 tgcactattgatttcatgaat 1932
>gb|AC175468.3| Pan troglodytes BAC clone CH251-177K19 from chromosome 11, complete sequence Length = 212162 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 agctgccccacctcttcccca 76 ||||||||||||||||||||| Sbjct: 149034 agctgccccacctcttcccca 149054
>ref|XM_343825.3| PREDICTED: Rattus norvegicus midline 2 (predicted) (Mid2_predicted), mRNA Length = 2965 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccgccgccaccaccactct 216 ||||||||||||||||||||| Sbjct: 179 cgccgccgccaccaccactct 159
>ref|XM_001053301.1| PREDICTED: Rattus norvegicus midline 2 (predicted) (Mid2_predicted), mRNA Length = 3148 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccgccgccaccaccactct 216 ||||||||||||||||||||| Sbjct: 362 cgccgccgccaccaccactct 342
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1155 caatgacaatggtttgtaatt 1175 ||||||||||||||||||||| Sbjct: 2071041 caatgacaatggtttgtaatt 2071061
>gb|AC163739.2| Pan troglodytes BAC clone CH251-503F22 from chromosome unknown, complete sequence Length = 220347 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 agctgccccacctcttcccca 76 ||||||||||||||||||||| Sbjct: 34289 agctgccccacctcttcccca 34309
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 atctcgccgccgccaccacca 212 ||||||||||||||||||||| Sbjct: 75118 atctcgccgccgccaccacca 75098
>gb|BC084346.1| Xenopus laevis cDNA clone IMAGE:7018538 Length = 1190 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1033 agggtgagagaactacatgaa 1053 ||||||||||||||||||||| Sbjct: 868 agggtgagagaactacatgaa 888
>gb|AC111016.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_D06, complete sequence Length = 145323 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cttcgcgaccaccagtctcgt 164 ||||||||||||||||||||| Sbjct: 145264 cttcgcgaccaccagtctcgt 145284
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cttcgcgaccaccagtctcgt 164 ||||||||||||||||||||| Sbjct: 3634 cttcgcgaccaccagtctcgt 3654
>gb|AC124466.3| Mus musculus BAC clone RP24-160P1 from chromosome 18, complete sequence Length = 169529 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 cgccgccgccaccaccactct 216 ||||||||||||||||||||| Sbjct: 117017 cgccgccgccaccaccactct 117037
>gb|AC135197.1| Rattus norvegicus BAC CH230-348O5 (Children's Hospital Oakland Research Institute) complete sequence Length = 176608 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 gtgttggtattgactggtatt 510 ||||||||||||||||||||| Sbjct: 14063 gtgttggtattgactggtatt 14043
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 331 catccccgaccacaccgtcctccag 355 |||||||||| |||||||||||||| Sbjct: 1136079 catccccgacgacaccgtcctccag 1136055
>dbj|AK140171.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230326A14 product:unclassifiable, full insert sequence Length = 1986 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccgccgccaccaccactct 216 ||||||||||||||||||||| Sbjct: 202 cgccgccgccaccaccactct 182
>gb|AC073359.12| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178336 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 878 tgctagacaagagaaagaagt 898 ||||||||||||||||||||| Sbjct: 144253 tgctagacaagagaaagaagt 144233
>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222518 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1209 atttaaaaaaattaaaggcat 1229 ||||||||||||||||||||| Sbjct: 156032 atttaaaaaaattaaaggcat 156052
>gb|AC097486.2| Homo sapiens BAC clone RP11-213L8 from 4, complete sequence Length = 158271 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1205 tcctatttaaaaaaattaaag 1225 ||||||||||||||||||||| Sbjct: 89188 tcctatttaaaaaaattaaag 89208
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 atctcgccgccgccaccacca 212 ||||||||||||||||||||| Sbjct: 17567307 atctcgccgccgccaccacca 17567287
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cttcgcgaccaccagtctcgt 164 ||||||||||||||||||||| Sbjct: 22301999 cttcgcgaccaccagtctcgt 22302019
>emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on chromosome 22q12.3-13.1, complete sequence Length = 97585 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ctgccccacctcttccccaac 78 ||||||||||||||||||||| Sbjct: 20112 ctgccccacctcttccccaac 20132
>gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, complete sequence Length = 173917 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1204 ctcctatttaaaaaaattaaa 1224 ||||||||||||||||||||| Sbjct: 65817 ctcctatttaaaaaaattaaa 65797
>emb|AL157369.7| Human DNA sequence from clone RP11-528D24 on chromosome 13 Contains the SUCLA2 gene for succinate-CoA ligase, ADP-forming, beta subunit (A-BETA), a novel gene and a CpG island, complete sequence Length = 83827 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 970 tacgttgatgatgagatggaggaaa 994 ||||||||||| ||||||||||||| Sbjct: 79377 tacgttgatgaagagatggaggaaa 79401
>emb|Z99104.2|BSUB0001 Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080 Length = 213080 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1209 atttaaaaaaattaaaggcat 1229 ||||||||||||||||||||| Sbjct: 204119 atttaaaaaaattaaaggcat 204139
>emb|X53399.1|BSADAAB B.subtilis ada operon adaA and adaB genes encoding methylphosphotriester-DNA methyltransferase and methylguanine-DNA methyltransferase Length = 1530 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1209 atttaaaaaaattaaaggcat 1229 ||||||||||||||||||||| Sbjct: 631 atttaaaaaaattaaaggcat 651
>gb|AY007564.1| Saccharopolyspora spinosa probable lysR-type transcriptional regulator, probable keto acyl reductase, spinosad biosynthetic gene cluster, complete sequence, and probable exodeoxyribonuclease V genes, complete cds; and unknown gene Length = 80161 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agcatctcgccgccgccacca 209 ||||||||||||||||||||| Sbjct: 13294 agcatctcgccgccgccacca 13274
>emb|CR524322.1| Gallus gallus finished cDNA, clone ChEST817o13 Length = 829 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1210 tttaaaaaaattaaaggcatg 1230 ||||||||||||||||||||| Sbjct: 539 tttaaaaaaattaaaggcatg 519
>gb|AC104595.6| Homo sapiens BAC clone CTD-2026H6 from 2, complete sequence Length = 45334 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 675 aaattggagtgtttttgaaca 695 ||||||||||||||||||||| Sbjct: 34030 aaattggagtgtttttgaaca 34050
>gb|BC092333.1| Xenopus laevis cDNA clone IMAGE:6955394 Length = 1248 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1033 agggtgagagaactacatgaa 1053 ||||||||||||||||||||| Sbjct: 947 agggtgagagaactacatgaa 967
>gb|AC109220.16| Mus musculus chromosome 7, clone RP23-84B11, complete sequence Length = 212018 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1210 tttaaaaaaattaaaggcatg 1230 ||||||||||||||||||||| Sbjct: 21440 tttaaaaaaattaaaggcatg 21460
>gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, complete sequence Length = 213862 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1209 atttaaaaaaattaaaggcat 1229 ||||||||||||||||||||| Sbjct: 81035 atttaaaaaaattaaaggcat 81055
>dbj|AP003774.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-147G6, complete sequence Length = 166128 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 agctgccccacctcttcccca 76 ||||||||||||||||||||| Sbjct: 32715 agctgccccacctcttcccca 32735
>dbj|AP001453.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-783K16, complete sequence Length = 166356 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 agctgccccacctcttcccca 76 ||||||||||||||||||||| Sbjct: 123896 agctgccccacctcttcccca 123916
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 cccttcctcctccagcagcag 256 ||||||||||||||||||||| Sbjct: 100244 cccttcctcctccagcagcag 100224
>emb|AL929100.11| Mouse DNA sequence from clone RP23-436G18 on chromosome 2, complete sequence Length = 196372 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 447 tagattctttgataatttgat 467 ||||||||||||||||||||| Sbjct: 180278 tagattctttgataatttgat 180258
>emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chromosome X, complete sequence Length = 213187 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccgccgccaccaccactct 216 ||||||||||||||||||||| Sbjct: 145094 cgccgccgccaccaccactct 145074
>ref|NM_011845.1| Mus musculus midline 2 (Mid2), mRNA emb|Y18881.1|MMU18881 Mus musculus mRNA for MID2 protein Length = 3955 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccgccgccaccaccactct 216 ||||||||||||||||||||| Sbjct: 195 cgccgccgccaccaccactct 175
>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete sequence Length = 196078 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 tttgatgcactattgatttca 482 ||||||||||||||||||||| Sbjct: 4320 tttgatgcactattgatttca 4300
>emb|AL732530.6| Mouse DNA sequence from clone RP23-102I12 on chromosome 4, complete sequence Length = 211998 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 852 agtttatgttcaattcaatgg 872 ||||||||||||||||||||| Sbjct: 133858 agtttatgttcaattcaatgg 133838
>dbj|AB006424.1| Bacillus subtilis genomic DNA, 70 kb region between 17 and 23 degree Length = 69650 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1209 atttaaaaaaattaaaggcat 1229 ||||||||||||||||||||| Sbjct: 7102 atttaaaaaaattaaaggcat 7122 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 240,521,398 Number of extensions: 14275349 Number of successful extensions: 341654 Number of sequences better than 10.0: 44 Number of HSP's gapped: 341654 Number of HSP's successfully gapped: 44 Length of query: 1258 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1235 Effective length of database: 18,503,978,556 Effective search space: 22852413516660 Effective search space used: 22852413516660 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)