>gb|AC156163.2| Mus musculus BAC clone RP24-122E11 from chromosome 9, complete sequence
          Length = 141660
 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 359    aaattatttaactcagatatgcat 382
              ||||||||||||||||||||||||
Sbjct: 120450 aaattatttaactcagatatgcat 120473

>gb|AC138616.4| Mus musculus BAC clone RP23-403D16 from 9, complete sequence
          Length = 196304

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 359    aaattatttaactcagatatgcat 382
              ||||||||||||||||||||||||
Sbjct: 151556 aaattatttaactcagatatgcat 151533

>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 62    gcatcgcgacggcgggtcggcggcgg 87
             ||||||||| ||||||||||||||||
Sbjct: 14488 gcatcgcgagggcgggtcggcggcgg 14463

>ref|XM_001223372.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04159)
           mRNA, complete cds
          Length = 843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  caagcagcccatctacaccaa 115
           |||||||||||||||||||||
Sbjct: 687 caagcagcccatctacaccaa 707

>ref|NM_001063216.1| Oryza sativa (japonica cultivar-group) Os06g0129400 (Os06g0129400)
           mRNA, complete cds
          Length = 2841

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 12  ttcctctgcgggagacggcggcggc 36
           |||||| ||||||||||||||||||
Sbjct: 557 ttcctcggcgggagacggcggcggc 533

>emb|CR854906.9| Zebrafish DNA sequence from clone CH211-76E20 in linkage group 2,
             complete sequence
          Length = 47673

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 385   tcattagctgattattttatt 405
             |||||||||||||||||||||
Sbjct: 28054 tcattagctgattattttatt 28074

>gb|AC115015.8| Mus musculus chromosome 3, clone RP24-196A21, complete sequence
          Length = 137911

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   cttgagaaagttctcaaagtt 218
             |||||||||||||||||||||
Sbjct: 97262 cttgagaaagttctcaaagtt 97242

>gb|AC132565.28| Medicago truncatula clone mth2-4a8, complete sequence
          Length = 134155

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 442   gtgattgtgatgtttaatttt 462
             |||||||||||||||||||||
Sbjct: 25811 gtgattgtgatgtttaatttt 25791

>gb|AC122199.4| Mus musculus BAC clone RP23-57C9 from chromosome 8, complete sequence
          Length = 202975

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 384    atcattagctgattattttatttct 408
              |||||||||||| ||||||||||||
Sbjct: 192772 atcattagctgaatattttatttct 192748

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 30      cggcggctgaaggccgggctg 50
               |||||||||||||||||||||
Sbjct: 3358629 cggcggctgaaggccgggctg 3358609

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 12      ttcctctgcgggagacggcggcggc 36
               |||||| ||||||||||||||||||
Sbjct: 1554345 ttcctcggcgggagacggcggcggc 1554321

>gb|AC162947.2| Mus musculus BAC clone RP23-12D16 from chromosome 8, complete sequence
          Length = 230889

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 384   atcattagctgattattttatttct 408
             |||||||||||| ||||||||||||
Sbjct: 34304 atcattagctgaatattttatttct 34280

>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0538C01
          Length = 155643

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 12    ttcctctgcgggagacggcggcggc 36
             |||||| ||||||||||||||||||
Sbjct: 83069 ttcctcggcgggagacggcggcggc 83045

>gb|AC127086.4| Mus musculus BAC clone RP24-540I5 from 8, complete sequence
          Length = 161316

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 384   atcattagctgattattttatttct 408
             |||||||||||| ||||||||||||
Sbjct: 37415 atcattagctgaatattttatttct 37391

>dbj|AK241802.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065208K15,
           full insert sequence
          Length = 1548

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  cgggtcggcggcggctcgcg 93
           ||||||||||||||||||||
Sbjct: 548 cgggtcggcggcggctcgcg 567

>gb|BT013317.1| Lycopersicon esculentum clone 135002R, mRNA sequence
          Length = 1182

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 ttgagttgcttgacttgaga 204
           ||||||||||||||||||||
Sbjct: 781 ttgagttgcttgacttgaga 762

>ref|XM_537795.2| PREDICTED: Canis familiaris similar to notch1 preproprotein
            (LOC480676), mRNA
          Length = 7635

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 27   cggcggcggctgaaggccgggctg 50
            |||||||||||| |||||||||||
Sbjct: 7149 cggcggcggctgcaggccgggctg 7126

>gb|BC047969.1| Xenopus laevis adaptor-related protein complex 2, mu 1 subunit, mRNA
            (cDNA clone MGC:53076 IMAGE:5542078), complete cds
          Length = 2438

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  ctcaaagttcatggatatcg 229
            ||||||||||||||||||||
Sbjct: 1409 ctcaaagttcatggatatcg 1390

>gb|AC133502.4| Mus musculus chromosome 7 clone RP24-290G20, complete sequence
          Length = 160238

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   attatttaactcagatatgc 380
             ||||||||||||||||||||
Sbjct: 69187 attatttaactcagatatgc 69206

>gb|AC140119.3| Homo sapiens 3 BAC RP11-747D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 80892

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   tttaactcagatatgcatca 384
             ||||||||||||||||||||
Sbjct: 46880 tttaactcagatatgcatca 46861

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      gtcggcggcggctcgcggca 96
               ||||||||||||||||||||
Sbjct: 2256510 gtcggcggcggctcgcggca 2256529

>ref|NM_060976.3| Caenorhabditis elegans Valyl tRNA Synthetase family member (vrs-2)
            (vrs-2) mRNA, complete cds
          Length = 3568

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 207  gttctcaaagttcatggatatcga 230
            ||||||| ||||||||||||||||
Sbjct: 2175 gttctcagagttcatggatatcga 2198

>emb|AL110500.1| Caenorhabditis elegans YAC Y87G2A, complete sequence
          Length = 123091

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   gttctcaaagttcatggatatcga 230
             ||||||| ||||||||||||||||
Sbjct: 63424 gttctcagagttcatggatatcga 63401

>emb|Z54206.1|BVH1LFT31 Bovine herpesvirus type 1 31-kb DNA (left genome end)
          Length = 31444

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 72   ggcgggtcggcggcggctcgcggc 95
            |||||||||||||| |||||||||
Sbjct: 9712 ggcgggtcggcggcagctcgcggc 9689

>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 72   ggcgggtcggcggcggctcgcggc 95
            |||||||||||||| |||||||||
Sbjct: 9712 ggcgggtcggcggcagctcgcggc 9689

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 74       cgggtcggcggcggctcgcg 93
                ||||||||||||||||||||
Sbjct: 11261079 cgggtcggcggcggctcgcg 11261060

>emb|BX000440.10| Zebrafish DNA sequence from clone CH211-14L9 in linkage group 16,
             complete sequence
          Length = 162906

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   atgtcaaattatttaactca 373
             ||||||||||||||||||||
Sbjct: 94605 atgtcaaattatttaactca 94586

>gb|AC067844.6| Homo sapiens chromosome 8, clone RP11-234A3, complete sequence
          Length = 160099

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    agatatgcatcatcattagc 392
              ||||||||||||||||||||
Sbjct: 143010 agatatgcatcatcattagc 143029

>emb|Z11610.1|HEHBUL48 Bovine herpesvirus alpha gene transinducing factor gene and VP8
           gene, complete CDS's
          Length = 4831

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ggcgggtcggcggcggctcgcggc 95
           |||||||||||||| |||||||||
Sbjct: 142 ggcgggtcggcggcagctcgcggc 119

>emb|AL445563.1|MPULM01 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3
          Length = 327650

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    aaattatttaactcagatat 378
              ||||||||||||||||||||
Sbjct: 238973 aaattatttaactcagatat 238992

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ctgcgggagacggcggcggc 36
             ||||||||||||||||||||
Sbjct: 87644 ctgcgggagacggcggcggc 87625

>emb|CR385056.20| Wallaby DNA sequence from clone GRWB-43E9, complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   aacttgtaacatgtatgcat 440
             ||||||||||||||||||||
Sbjct: 51853 aacttgtaacatgtatgcat 51834

>emb|CR749769.6| Zebrafish DNA sequence from clone DKEY-215J3 in linkage group 17,
             complete sequence
          Length = 170993

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cagtgtgtcctttatatcag 148
             ||||||||||||||||||||
Sbjct: 46969 cagtgtgtcctttatatcag 46950

>gb|AC019116.7| Homo sapiens BAC clone RP11-506M2 from 2, complete sequence
          Length = 134249

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   tgattgtgatgtttaatttt 462
             ||||||||||||||||||||
Sbjct: 98255 tgattgtgatgtttaatttt 98274

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      gcggcggctcgcggcaagca 100
               ||||||||||||||||||||
Sbjct: 1527487 gcggcggctcgcggcaagca 1527468

>dbj|AP005541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0436B05
          Length = 149754

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cgggtcggcggcggctcgcg 93
             ||||||||||||||||||||
Sbjct: 96097 cgggtcggcggcggctcgcg 96078

>emb|AL844568.13| Mouse DNA sequence from clone RP23-369H9 on chromosome 2, complete
             sequence
          Length = 140495

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   attatttaactcagatatgc 380
             ||||||||||||||||||||
Sbjct: 39147 attatttaactcagatatgc 39166

>gb|U21137.1|BHU21137 Bovine herpesvirus 1 virion tegument protein gene, complete cds
          Length = 1499

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ggcgggtcggcggcggctcgcggc 95
           |||||||||||||| |||||||||
Sbjct: 718 ggcgggtcggcggcagctcgcggc 695


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 82,317,997
Number of extensions: 4949841
Number of successful extensions: 87772
Number of sequences better than 10.0: 38
Number of HSP's gapped: 87772
Number of HSP's successfully gapped: 38
Length of query: 522
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 500
Effective length of database: 18,508,616,841
Effective search space: 9254308420500
Effective search space used: 9254308420500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)