ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf66h23 |
|---|---|
| Clone Library Name | barley_pub |
>Q9WTZ0:UXT_MOUSE Protein UXT - Mus musculus (Mouse)| Length = 157 Score = 87.4 bits (215), Expect = 9e-17 Identities = 46/131 (35%), Positives = 74/131 (56%) Frame = +3 Query: 264 EKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNLG 443 EKV ++E F+ L+ DL + R+ +++Q +L L+ IE L++ + + V+LG Sbjct: 15 EKVLRYETFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74 Query: 444 SEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLARQIDEYTHLIASIKAQ 623 ++ VPDT I+V +G GF +E T EAL+FI + + L D T +IKA Sbjct: 75 CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAH 134 Query: 624 IKLVCEGIREL 656 I ++ EG+REL Sbjct: 135 IHMMLEGLREL 145
>Q9UBK9:UXT_HUMAN Protein UXT - Homo sapiens (Human)| Length = 157 Score = 83.2 bits (204), Expect = 2e-15 Identities = 49/139 (35%), Positives = 78/139 (56%) Frame = +3 Query: 240 AVEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTS 419 AVEA EKV ++E F+ L+ DL + R+ +++Q +L L+ IE L++ + Sbjct: 9 AVEAT--GEKVLRYETFISDVLQRDLRKVLDHRDKVYEQLAKYLQLRNVIERLQEAKHSE 66 Query: 420 MRSMVNLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLARQIDEYTH 599 + V+LG ++ VPDT I+V +G GF +E T EAL+FI + + L + T Sbjct: 67 LYMQVDLGCNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSNSLTK 126 Query: 600 LIASIKAQIKLVCEGIREL 656 +IKA I ++ EG+REL Sbjct: 127 DSMNIKAHIHMLLEGLREL 145
>O28216:PFDA_ARCFU Prefoldin alpha subunit - Archaeoglobus fulgidus| Length = 137 Score = 45.1 bits (105), Expect = 5e-04 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Frame = +3 Query: 372 DLKKNIENLE--KNGVTSMRSMVNLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQ 545 + +K +E LE ++ TS+ +++NLG V+ +V +++ + VDIG G VE EA++ Sbjct: 37 EYRKTLETLEFFESIDTSVEALMNLGGGVFAYVDVKNSKKMLVDIGSGVVVEREVGEAIE 96 Query: 546 FISVREARLARQIDEYTHLIASIKAQIKLV 635 F+ R ++ ++ T ++ + +Q + + Sbjct: 97 FVKNRIKKIEENQEKMTSMLQQVLSQAQRI 126
>Q4UN67:TILS_RICFE tRNA(Ile)-lysidine synthase - Rickettsia felis (Rickettsia azadi)| Length = 430 Score = 35.0 bits (79), Expect = 0.50 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +3 Query: 276 KFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKK 383 K D +D + KP+L++AIA+ +F+ FLDL K Sbjct: 218 KINDLLDNKFKPELISAIAEAVKIFEYGFAFLDLVK 253
>Q9ZEA3:TILS_RICPR tRNA(Ile)-lysidine synthase - Rickettsia prowazekii| Length = 430 Score = 33.1 bits (74), Expect = 1.9 Identities = 22/60 (36%), Positives = 33/60 (55%) Frame = +3 Query: 204 RISKESTGVMAMAVEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKK 383 ++ KE + A E L+Q K K ++ LKP L++AIA+ +F+ TFLDL K Sbjct: 200 KLFKEENYIKA---EISLQQLKTNKL---IEDELKPALISAIAEAVKIFEYGFTFLDLVK 253
>Q876G9:MYO2_SACBA Myosin-2 - Saccharomyces bayanus (Yeast) (Saccharomyces uvarum)| Length = 1568 Score = 33.1 bits (74), Expect = 1.9 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Frame = +3 Query: 213 KESTGVMAMAVEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIE 392 KE+ + E +++ E+ K ++ ++ K LVN Q+N + QKT D ++ E Sbjct: 961 KENKEMTERIKELQVQVEESAKLQETLENMKKEHLVNIDNQKNKDMELQKTIEDNLQSTE 1020 Query: 393 NLEKNGVTSMRSMVNLGSEVYMQA-----EVPDTRHIFVD 497 KN + MV +E+ ++ E+ +T+ V+ Sbjct: 1021 QNLKNAQLELEEMVKQHNELKEESRKQLDELDETKKALVE 1060
>O18054:PFD3_CAEEL Probable prefoldin subunit 3 - Caenorhabditis elegans| Length = 185 Score = 32.7 bits (73), Expect = 2.5 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 2/145 (1%) Frame = +3 Query: 198 DSRISKESTGVMAMAVEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDL 377 +S ++KE + V R + K K E + +AQ+ + ++ F + Sbjct: 23 ESWLTKEKLSIEEAEVVLREKYGKYKYVES-----------SMLAQKVRMSEKIPEFENS 71 Query: 378 KKNIENL--EKNGVTSMRSMVNLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFI 551 I+ L ++ S + L +VY +A V + + +G VE+ + A + + Sbjct: 72 LSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKLL 131 Query: 552 SVREARLARQIDEYTHLIASIKAQI 626 + + +DE T+ ++ IK QI Sbjct: 132 DKNRGSVQKVVDELTNELSYIKDQI 156
>Q73I58:TIG_WOLPM Trigger factor - Wolbachia pipientis wMel| Length = 444 Score = 32.3 bits (72), Expect = 3.3 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 21/160 (13%) Frame = +3 Query: 243 VEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSM 422 +EA++ +E +K+F D + + P+ + K +D + I N G +S Sbjct: 149 IEAKIEEEDIKEFIDSIKTKF-PNFASVDDASYQAKDGDKLIIDFEGRIRNKLFQGGSSK 207 Query: 423 RSMVNLGSEVYMQA--------EVPDTRHIFVDIGLGFH-VEFTWQEALQFISVREARLA 575 VNLGS ++ + +T++ + + + QEA + V E ++A Sbjct: 208 NFAVNLGSGTFINGFEDQLTGMKKGETKNFKLKFPENYQAISLAGQEADFSVRVNEIQIA 267 Query: 576 RQID------------EYTHLIASIKAQIKLVCEGIRELL 659 + + +Y+ LI K I C +R LL Sbjct: 268 KDFENDDEIAKSIGFKDYSLLINHAKKMIGDQCTEMRNLL 307
>Q68XR8:TILS_RICTY tRNA(Ile)-lysidine synthase - Rickettsia typhi| Length = 430 Score = 32.0 bits (71), Expect = 4.3 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = +3 Query: 204 RISKESTGVMAMAVEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKK 383 ++ KE + A E ++Q K K ++ LKP+L++AI + +F+ TFLDL K Sbjct: 200 KLFKEENYIKA---EISVQQLKTNKL---IEDELKPELISAIGEAVKIFEYGFTFLDLVK 253
>P66657:RIMM_STAAW Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain MW2) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>Q6G9X4:RIMM_STAAS Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain MSSA476) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>Q6GHJ6:RIMM_STAAR Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain MRSA252) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>P66656:RIMM_STAAN Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain N315) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>P66655:RIMM_STAAM Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain Mu50 / ATCC 700699) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>Q5HGJ3:RIMM_STAAC Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain COL) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>Q2YXK2:RIMM_STAAB Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain bovine RF122) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>Q2FHJ9:RIMM_STAA3 Probable 16S rRNA-processing protein rimM - Staphylococcus aureus| (strain USA300) Length = 167 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +3 Query: 267 KVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMVNL-G 443 KVK DF D R +P V + NN + + K + L G+ ++ + +L G Sbjct: 19 KVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKG 78 Query: 444 SEVYMQAEVPD 476 S +Y + + D Sbjct: 79 SSIYQERDHED 89
>Q2KHK3:LAEVR_MOUSE Laeverin - Mus musculus (Mouse)| Length = 559 Score = 32.0 bits (71), Expect = 4.3 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = -2 Query: 856 PPSQQWDYLRELHPWHTACRKNLQKIPWRDTSYPSTKHLYLSAASLVCKRLSAASLIPAA 677 PPS WD+LR L PW +L+ PW S +L + + R + AS Sbjct: 85 PPSGPWDHLR-LPPWLVPLHYDLELWPWLQPDKLSPPNLTFTGRVNITVRCTVASSRLLL 143 Query: 676 HS 671 HS Sbjct: 144 HS 145
>Q4FTK9:GCSP_PSYAR Glycine dehydrogenase [decarboxylating] - Psychrobacter arcticum| Length = 965 Score = 32.0 bits (71), Expect = 4.3 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Frame = +3 Query: 345 LFQQQKTFLDLKKNIENLEKNGVTSMRSMVNLGSEVYMQAEVPDTRHIFVDIGLGFHVEF 524 +F T ++ + +++LE + RSM++LGS + + Sbjct: 481 VFNSHHTEHEMLRYLKSLEDKDLAMNRSMISLGSCTMKLNATSEM------------LPI 528 Query: 525 TWQEALQFISVREARLARQIDEYTHLIASIKAQIKLVCEGIRELLQLPAE*AAG--IKLA 698 TW E F +V Q+ Y +I S++ Q+K + G ++ P A+G L Sbjct: 529 TWPE---FANVHPFAPRDQVTGYVAMIDSLQEQLKAI-TGFDDVSMQPNSGASGEYAGLL 584 Query: 699 AERRLHTKLA-AER*RCLVEGYDVSRHG 779 A RR H L +R CL+ +S HG Sbjct: 585 AIRRYHESLGETDRDVCLI---PMSAHG 609
>Q8RH05:DNAK_FUSNN Chaperone protein dnaK - Fusobacterium nucleatum subsp. nucleatum| Length = 607 Score = 32.0 bits (71), Expect = 4.3 Identities = 21/64 (32%), Positives = 32/64 (50%) Frame = +3 Query: 201 SRISKESTGVMAMAVEARLRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLK 380 S +SKE + M EA E+ KKF++ V+ R K D + + ++ K + K Sbjct: 476 SNLSKEE--IERMTKEAEAHAEEDKKFQELVEARNKADQLISATEKTLKENPDKVSEEDK 533 Query: 381 KNIE 392 KNIE Sbjct: 534 KNIE 537
>Q5JE63:PFDA2_PYRKO Prefoldin alpha subunit 2 - Pyrococcus kodakaraensis (Thermococcus| kodakaraensis) Length = 142 Score = 31.6 bits (70), Expect = 5.6 Identities = 22/81 (27%), Positives = 41/81 (50%) Frame = +3 Query: 432 VNLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLARQIDEYTHLIAS 611 + LGS V ++ ++ + + +D+G G V T EA + I E R+ +D L+ Sbjct: 62 IPLGSGVAIRGKIENPDDVIMDVGAGILVGATVDEARENI---EKRIKALMDLRLALLRK 118 Query: 612 IKAQIKLVCEGIRELLQLPAE 674 I+ + V E ++EL ++ E Sbjct: 119 IEEDTRKVNELLKELQEMQPE 139
>Q8ZQN7:DING_SALTY Probable ATP-dependent helicase dinG - Salmonella typhimurium| Length = 714 Score = 31.6 bits (70), Expect = 5.6 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Frame = +3 Query: 255 LRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMV 434 LR +D + RRL D + + RN + ++ F ++ I+ E V + ++V Sbjct: 171 LRDHTDIAIDDDLWRRLSTDKASCL-NRNCHYYRECPFFVARREIQEAEV--VVANHALV 227 Query: 435 NLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLAR-QIDEYTHLIAS 611 E +A +P+ +H+ + + G H+ ++AL+ + A R Q+D ++ L+A+ Sbjct: 228 MAAME--SEAVLPEPKHLLLVLDEGHHLPDVARDALEMSAEITASWYRLQLDLFSKLVAT 285 Query: 612 IKAQIK 629 Q + Sbjct: 286 CMEQFR 291
>Q5PG19:DING_SALPA Probable ATP-dependent helicase dinG - Salmonella paratyphi-a| Length = 714 Score = 31.6 bits (70), Expect = 5.6 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Frame = +3 Query: 255 LRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMV 434 LR +D + RRL D + + RN + ++ F ++ I+ E V + ++V Sbjct: 171 LRDHTDIAIDDDLWRRLSTDKASCL-NRNCHYYRECPFFVARREIQEAEV--VVANHALV 227 Query: 435 NLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLAR-QIDEYTHLIAS 611 E +A +P+ +H+ + + G H+ ++AL+ + A R Q+D ++ L+A+ Sbjct: 228 MAAME--SEAVLPEPKHLLLVLDEGHHLPDVARDALEMSAEITASWYRLQLDLFSKLVAT 285 Query: 612 IKAQIK 629 Q + Sbjct: 286 CMEQFR 291
>Q8LGU1:MRP6_ARATH Multidrug resistance-associated protein 6 precursor - Arabidopsis| thaliana (Mouse-ear cress) Length = 1295 Score = 31.2 bits (69), Expect = 7.3 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%) Frame = +3 Query: 300 RLKPDLVNAIAQRNNLFQQQKTF-LDLKKNIENLEKNGVTSMRSMV-----NLGSEVYMQ 461 ++ PD ++AI Q N FQ+ F LD + ++ +E++G+ + + V N G E + Sbjct: 394 KIIPDAISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGWE--PE 451 Query: 462 AEVPDTRHIFVDIGLG 509 ++P R+I ++I G Sbjct: 452 TKIPTLRNIHLEIKHG 467
>Q57RD7:DING_SALCH Probable ATP-dependent helicase dinG - Salmonella choleraesuis| Length = 714 Score = 31.2 bits (69), Expect = 7.3 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Frame = +3 Query: 255 LRQEKVKKFEDFVDRRLKPDLVNAIAQRNNLFQQQKTFLDLKKNIENLEKNGVTSMRSMV 434 LR +D + RRL D + + RN + ++ F ++ I+ E V + ++V Sbjct: 171 LRDHTDIAIDDDLWRRLSTDKASCL-NRNCHYYRECPFFVARREIQEAEV--VVANHALV 227 Query: 435 NLGSEVYMQAEVPDTRHIFVDIGLGFHVEFTWQEALQFISVREARLAR-QIDEYTHLIAS 611 E +A +P+ +H+ + + G H+ ++AL+ + A R Q+D ++ L+A+ Sbjct: 228 MAAME--SEAVLPEPKHLLLVLDEGHHLPDVARDALEMSAEITASWYRLQLDLFSKLVAT 285 Query: 612 IKAQIK 629 Q + Sbjct: 286 SMEQFR 291 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 171,109,852 Number of extensions: 3707235 Number of successful extensions: 9604 Number of sequences better than 10.0: 25 Number of HSP's gapped: 9601 Number of HSP's successfully gapped: 25 Length of query: 345 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 231 Effective length of database: 69,416,809 Effective search space: 16035282879 Effective search space used: 16035282879 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
