ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf66h23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT832784.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN052D14, full insert sequence Length = 835 Score = 371 bits (187), Expect = 3e-99 Identities = 355/411 (86%) Strand = Plus / Plus Query: 245 ggaggcgcgtctccggcaggagaaggtgaagaagtttgaagatttcgttgaccggaggct 304 ||||||||| | ||||||||||||||||||||||| || || ||||| |||||||| || Sbjct: 208 ggaggcgcgggtgcggcaggagaaggtgaagaagttcgaggacttcgtcgaccggagact 267 Query: 305 caagcctgacctcgtgaacgccatagcccagcgcaataacttgttccagcagcagaagac 364 ||||| ||||| |||||| |||| || ||||| | || ||||||||||||||||||| Sbjct: 268 gaagccggaccttgtgaacaccatcgcgcagcgggacaaggtgttccagcagcagaagac 327 Query: 365 attcttggatttgaagaagaacatcgagaatttggaaaagaatggtgtaacgagcatgcg 424 |||||||| ||||| | ||||||||| |||||||| |||||||| || || || ||||| Sbjct: 328 cttcttggacttgaaaaggaacatcgaaaatttggagaagaatggagtcaccagtatgcg 387 Query: 425 atccatggtcaatcttggctcagaggtgtacatgcaggcagaagtgccggacacgaggca 484 ||||||||||||||||||||| ||||||||| |||||||||||||| || || || || Sbjct: 388 atccatggtcaatcttggctctgaggtgtacgcccaggcagaagtgccagatacaagaca 447 Query: 485 catctttgtggatattggtctaggttttcatgtggagtttacttggcaagaggctttgca 544 ||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| Sbjct: 448 catttttgtggatattggtctaggtttccatgtggaatttacttggcaggaagctttgca 507 Query: 545 gtttatatctgtaagagaagcaaggttggccagacaaatagacgagtacacacacctgat 604 ||||||||||||||||||| |||||||||| ||||| ||||| |||||||| || || || Sbjct: 508 gtttatatctgtaagagaatcaaggttggcaagacagatagatgagtacactcatctcat 567 Query: 605 agcgagcataaaagcacaaatcaagttggtgtgtgaaggcatccgtgaact 655 || ||||||||||| || ||||||||||| |||||||| ||||| ||||| Sbjct: 568 cgcaagcataaaagcgcagatcaagttggtatgtgaaggtatccgcgaact 618
>ref|NM_001066703.1| Oryza sativa (japonica cultivar-group) Os07g0595800 (Os07g0595800) mRNA, complete cds Length = 798 Score = 371 bits (187), Expect = 3e-99 Identities = 355/411 (86%) Strand = Plus / Plus Query: 245 ggaggcgcgtctccggcaggagaaggtgaagaagtttgaagatttcgttgaccggaggct 304 ||||||||| | ||||||||||||||||||||||| || || ||||| |||||||| || Sbjct: 172 ggaggcgcgggtgcggcaggagaaggtgaagaagttcgaggacttcgtcgaccggagact 231 Query: 305 caagcctgacctcgtgaacgccatagcccagcgcaataacttgttccagcagcagaagac 364 ||||| ||||| |||||| |||| || ||||| | || ||||||||||||||||||| Sbjct: 232 gaagccggaccttgtgaacaccatcgcgcagcgggacaaggtgttccagcagcagaagac 291 Query: 365 attcttggatttgaagaagaacatcgagaatttggaaaagaatggtgtaacgagcatgcg 424 |||||||| ||||| | ||||||||| |||||||| |||||||| || || || ||||| Sbjct: 292 cttcttggacttgaaaaggaacatcgaaaatttggagaagaatggagtcaccagtatgcg 351 Query: 425 atccatggtcaatcttggctcagaggtgtacatgcaggcagaagtgccggacacgaggca 484 ||||||||||||||||||||| ||||||||| |||||||||||||| || || || || Sbjct: 352 atccatggtcaatcttggctctgaggtgtacgcccaggcagaagtgccagatacaagaca 411 Query: 485 catctttgtggatattggtctaggttttcatgtggagtttacttggcaagaggctttgca 544 ||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| Sbjct: 412 catttttgtggatattggtctaggtttccatgtggaatttacttggcaggaagctttgca 471 Query: 545 gtttatatctgtaagagaagcaaggttggccagacaaatagacgagtacacacacctgat 604 ||||||||||||||||||| |||||||||| ||||| ||||| |||||||| || || || Sbjct: 472 gtttatatctgtaagagaatcaaggttggcaagacagatagatgagtacactcatctcat 531 Query: 605 agcgagcataaaagcacaaatcaagttggtgtgtgaaggcatccgtgaact 655 || ||||||||||| || ||||||||||| |||||||| ||||| ||||| Sbjct: 532 cgcaagcataaaagcgcagatcaagttggtatgtgaaggtatccgcgaact 582
>dbj|AK066349.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062C05, full insert sequence Length = 800 Score = 371 bits (187), Expect = 3e-99 Identities = 355/411 (86%) Strand = Plus / Plus Query: 245 ggaggcgcgtctccggcaggagaaggtgaagaagtttgaagatttcgttgaccggaggct 304 ||||||||| | ||||||||||||||||||||||| || || ||||| |||||||| || Sbjct: 173 ggaggcgcgggtgcggcaggagaaggtgaagaagttcgaggacttcgtcgaccggagact 232 Query: 305 caagcctgacctcgtgaacgccatagcccagcgcaataacttgttccagcagcagaagac 364 ||||| ||||| |||||| |||| || ||||| | || ||||||||||||||||||| Sbjct: 233 gaagccggaccttgtgaacaccatcgcgcagcgggacaaggtgttccagcagcagaagac 292 Query: 365 attcttggatttgaagaagaacatcgagaatttggaaaagaatggtgtaacgagcatgcg 424 |||||||| ||||| | ||||||||| |||||||| |||||||| || || || ||||| Sbjct: 293 cttcttggacttgaaaaggaacatcgaaaatttggagaagaatggagtcaccagtatgcg 352 Query: 425 atccatggtcaatcttggctcagaggtgtacatgcaggcagaagtgccggacacgaggca 484 ||||||||||||||||||||| ||||||||| |||||||||||||| || || || || Sbjct: 353 atccatggtcaatcttggctctgaggtgtacgcccaggcagaagtgccagatacaagaca 412 Query: 485 catctttgtggatattggtctaggttttcatgtggagtttacttggcaagaggctttgca 544 ||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| Sbjct: 413 catttttgtggatattggtctaggtttccatgtggaatttacttggcaggaagctttgca 472 Query: 545 gtttatatctgtaagagaagcaaggttggccagacaaatagacgagtacacacacctgat 604 ||||||||||||||||||| |||||||||| ||||| ||||| |||||||| || || || Sbjct: 473 gtttatatctgtaagagaatcaaggttggcaagacagatagatgagtacactcatctcat 532 Query: 605 agcgagcataaaagcacaaatcaagttggtgtgtgaaggcatccgtgaact 655 || ||||||||||| || ||||||||||| |||||||| ||||| ||||| Sbjct: 533 cgcaagcataaaagcgcagatcaagttggtatgtgaaggtatccgcgaact 583
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 135 bits (68), Expect = 4e-28 Identities = 86/92 (93%) Strand = Plus / Plus Query: 483 cacatctttgtggatattggtctaggttttcatgtggagtttacttggcaagaggctttg 542 ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||| Sbjct: 24191641 cacatttttgtggatattggtctaggtttccatgtggaatttacttggcaggaagctttg 24191700 Query: 543 cagtttatatctgtaagagaagcaaggttggc 574 ||||||||||||||||||||| |||||||||| Sbjct: 24191701 cagtttatatctgtaagagaatcaaggttggc 24191732 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 368 cttggatttgaagaagaacatcgagaatttggaaaagaatggtgtaacgagcatgcgatc 427 |||||| ||||| | ||||||||| |||||||| |||||||| || || || |||||||| Sbjct: 24190938 cttggacttgaaaaggaacatcgaaaatttggagaagaatggagtcaccagtatgcgatc 24190997 Query: 428 catggtcaatcttggctcagaggtgtacatgcaggcagaagtg 470 |||||||||||||||||| ||||||||| |||||||||||| Sbjct: 24190998 catggtcaatcttggctctgaggtgtacgcccaggcagaagtg 24191040 Score = 87.7 bits (44), Expect = 7e-14 Identities = 101/120 (84%) Strand = Plus / Plus Query: 245 ggaggcgcgtctccggcaggagaaggtgaagaagtttgaagatttcgttgaccggaggct 304 ||||||||| | ||||||||||||||||||||||| || || ||||| |||||||| || Sbjct: 24190692 ggaggcgcgggtgcggcaggagaaggtgaagaagttcgaggacttcgtcgaccggagact 24190751 Query: 305 caagcctgacctcgtgaacgccatagcccagcgcaataacttgttccagcagcagaagac 364 ||||| ||||| |||||| |||| || ||||| | || ||||||||||||||||||| Sbjct: 24190752 gaagccggaccttgtgaacaccatcgcgcagcgggacaaggtgttccagcagcagaagac 24190811 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Plus Query: 575 cagacaaatagacgagtacacacacctgatagcgagcataaaagcacaaatcaagttggt 634 |||||| ||||| |||||||| || || || || ||||||||||| || ||||||||||| Sbjct: 24193209 cagacagatagatgagtacactcatctcatcgcaagcataaaagcgcagatcaagttggt 24193268
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E05 Length = 137364 Score = 135 bits (68), Expect = 4e-28 Identities = 86/92 (93%) Strand = Plus / Plus Query: 483 cacatctttgtggatattggtctaggttttcatgtggagtttacttggcaagaggctttg 542 ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||| Sbjct: 3192 cacatttttgtggatattggtctaggtttccatgtggaatttacttggcaggaagctttg 3251 Query: 543 cagtttatatctgtaagagaagcaaggttggc 574 ||||||||||||||||||||| |||||||||| Sbjct: 3252 cagtttatatctgtaagagaatcaaggttggc 3283 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 368 cttggatttgaagaagaacatcgagaatttggaaaagaatggtgtaacgagcatgcgatc 427 |||||| ||||| | ||||||||| |||||||| |||||||| || || || |||||||| Sbjct: 2489 cttggacttgaaaaggaacatcgaaaatttggagaagaatggagtcaccagtatgcgatc 2548 Query: 428 catggtcaatcttggctcagaggtgtacatgcaggcagaagtg 470 |||||||||||||||||| ||||||||| |||||||||||| Sbjct: 2549 catggtcaatcttggctctgaggtgtacgcccaggcagaagtg 2591 Score = 87.7 bits (44), Expect = 7e-14 Identities = 101/120 (84%) Strand = Plus / Plus Query: 245 ggaggcgcgtctccggcaggagaaggtgaagaagtttgaagatttcgttgaccggaggct 304 ||||||||| | ||||||||||||||||||||||| || || ||||| |||||||| || Sbjct: 2243 ggaggcgcgggtgcggcaggagaaggtgaagaagttcgaggacttcgtcgaccggagact 2302 Query: 305 caagcctgacctcgtgaacgccatagcccagcgcaataacttgttccagcagcagaagac 364 ||||| ||||| |||||| |||| || ||||| | || ||||||||||||||||||| Sbjct: 2303 gaagccggaccttgtgaacaccatcgcgcagcgggacaaggtgttccagcagcagaagac 2362 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Plus Query: 575 cagacaaatagacgagtacacacacctgatagcgagcataaaagcacaaatcaagttggt 634 |||||| ||||| |||||||| || || || || ||||||||||| || ||||||||||| Sbjct: 4760 cagacagatagatgagtacactcatctcatcgcaagcataaaagcgcagatcaagttggt 4819
>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1710_H11 Length = 136107 Score = 135 bits (68), Expect = 4e-28 Identities = 86/92 (93%) Strand = Plus / Plus Query: 483 cacatctttgtggatattggtctaggttttcatgtggagtttacttggcaagaggctttg 542 ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||| Sbjct: 125056 cacatttttgtggatattggtctaggtttccatgtggaatttacttggcaggaagctttg 125115 Query: 543 cagtttatatctgtaagagaagcaaggttggc 574 ||||||||||||||||||||| |||||||||| Sbjct: 125116 cagtttatatctgtaagagaatcaaggttggc 125147 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 368 cttggatttgaagaagaacatcgagaatttggaaaagaatggtgtaacgagcatgcgatc 427 |||||| ||||| | ||||||||| |||||||| |||||||| || || || |||||||| Sbjct: 124353 cttggacttgaaaaggaacatcgaaaatttggagaagaatggagtcaccagtatgcgatc 124412 Query: 428 catggtcaatcttggctcagaggtgtacatgcaggcagaagtg 470 |||||||||||||||||| ||||||||| |||||||||||| Sbjct: 124413 catggtcaatcttggctctgaggtgtacgcccaggcagaagtg 124455 Score = 87.7 bits (44), Expect = 7e-14 Identities = 101/120 (84%) Strand = Plus / Plus Query: 245 ggaggcgcgtctccggcaggagaaggtgaagaagtttgaagatttcgttgaccggaggct 304 ||||||||| | ||||||||||||||||||||||| || || ||||| |||||||| || Sbjct: 124107 ggaggcgcgggtgcggcaggagaaggtgaagaagttcgaggacttcgtcgaccggagact 124166 Query: 305 caagcctgacctcgtgaacgccatagcccagcgcaataacttgttccagcagcagaagac 364 ||||| ||||| |||||| |||| || ||||| | || ||||||||||||||||||| Sbjct: 124167 gaagccggaccttgtgaacaccatcgcgcagcgggacaaggtgttccagcagcagaagac 124226 Score = 48.1 bits (24), Expect = 0.064 Identities = 51/60 (85%) Strand = Plus / Plus Query: 575 cagacaaatagacgagtacacacacctgatagcgagcataaaagcacaaatcaagttggt 634 |||||| ||||| |||||||| || || || || ||||||||||| || ||||||||||| Sbjct: 126624 cagacagatagatgagtacactcatctcatcgcaagcataaaagcgcagatcaagttggt 126683
>dbj|AP006426.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02I08, TM0316, complete sequence Length = 91886 Score = 50.1 bits (25), Expect = 0.016 Identities = 37/41 (90%) Strand = Plus / Plus Query: 430 tggtcaatcttggctcagaggtgtacatgcaggcagaagtg 470 ||||||||||||| || ||||| ||| |||||||||||||| Sbjct: 77685 tggtcaatcttgggtctgaggtatacctgcaggcagaagtg 77725
>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence Length = 221261 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 438 cttggctcagaggtgtacatgca 460 ||||||||||||||||||||||| Sbjct: 104922 cttggctcagaggtgtacatgca 104900
>gb|AC083836.6| Homo sapiens, clone RP11-90D11, complete sequence Length = 173428 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 tgcaaatcattaagtgcctac 972 ||||||||||||||||||||| Sbjct: 138697 tgcaaatcattaagtgcctac 138677
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tctgccggctgccgccctccc 53 ||||||||||||||||||||| Sbjct: 15120838 tctgccggctgccgccctccc 15120818
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tctgccggctgccgccctccc 53 ||||||||||||||||||||| Sbjct: 28469 tctgccggctgccgccctccc 28489
>gb|AC024995.8| Homo sapiens, clone RP11-328L11, complete sequence Length = 171873 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 tgcaaatcattaagtgcctac 972 ||||||||||||||||||||| Sbjct: 39249 tgcaaatcattaagtgcctac 39229
>emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O19 on chromosome 6q23.1-24.3 Contains the 5' end of the GRM1 gene for metabotropic glutamate receptor 1, complete sequence Length = 156935 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 acatcgagaatttggaaaaga 405 ||||||||||||||||||||| Sbjct: 11774 acatcgagaatttggaaaaga 11754
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 atcattatatatttcgcgatt 201 ||||||||||||||||||||| Sbjct: 1690716 atcattatatatttcgcgatt 1690736
>dbj|AP004220.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1483D9 Length = 162604 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 952 tgcaaatcattaagtgcctac 972 ||||||||||||||||||||| Sbjct: 29736 tgcaaatcattaagtgcctac 29756 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 189,910,280 Number of extensions: 10470903 Number of successful extensions: 225139 Number of sequences better than 10.0: 15 Number of HSP's gapped: 225133 Number of HSP's successfully gapped: 24 Length of query: 1037 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1014 Effective length of database: 18,503,978,556 Effective search space: 18763034255784 Effective search space used: 18763034255784 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
