| Clone Name | FLbaf63o05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001064709.1| Oryza sativa (japonica cultivar-group) Os06g0642900 (Os06g0642900) mRNA, complete cds Length = 1455 Score = 202 bits (102), Expect = 2e-48 Identities = 330/406 (81%) Strand = Plus / Plus Query: 671 ctgaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacgatgcac 730 |||||||||| || || ||||| ||||||||| ||||||| |||||||||| |||||| | Sbjct: 622 ctgaatgggttgagctatttgtcagagagatgacaaatgcatctgacatgggcgatgcgc 681 Query: 731 gggcccgtgcatcaagagctctggaagccttgacgaagtccatactggagggtgcaggag 790 | || || || ||||||||| | |||| ||| |||||| || ||||| || |||||| Sbjct: 682 gtgctcgcgcctcaagagctttagaagttttggagaagtcaatcgtggagcgtacaggag 741 Query: 791 ctgaagcagcgcagagcttgcatcaggagaacatgatgctcaaggagcagatgacggccg 850 |||| ||||| || | |||||| |||| || |||||||| |||||||| |||| | || Sbjct: 742 ctgatgcagcacaaaacttgcaaaaggaaaatatgatgcttaaggagcaattgaccgtcg 801 Query: 851 tcctgtcgcagaacgcggtcctgaagcgcgcggtggcaatccagcatgagcgacagaagg 910 | ||| ||||||| ||||| ||||| ||||| || || || |||||||| || |||| Sbjct: 802 tgctgcgagagaacgctgtcctcaagcgagcggtcgccattcaacatgagcgccaaaagg 861 Query: 911 agttcgacgagcgcagccacgaggtgcagggcctgaagcagctcgtcctgcagtaccagg 970 ||||||||||| | ||||| ||||| ||| | ||||||| || || |||||||||||| Sbjct: 862 agttcgacgagaggagccaggaggttcagagtttgaagcaacttgttgtgcagtaccagg 921 Query: 971 agcagctgaggactcttgagatcaacaactacgcgctgcagatgcatctgaagcaggccc 1030 |||| |||||||| || ||||| |||||||| |||||| |||||||||||||||||| | Sbjct: 922 agcaactgaggaccctagagataaacaactatgcgctgacgatgcatctgaagcaggctc 981 Query: 1031 agcagagcagctccatgcccgggcgctacaacccggacgtcttcta 1076 |||||| || |||||| ||||||| || ||| || ||||||||||| Sbjct: 982 agcagaacaactccatccccgggcacttcaatcctgacgtcttcta 1027 Score = 83.8 bits (42), Expect = 2e-12 Identities = 51/54 (94%) Strand = Plus / Plus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 293 |||||||||||||||||| ||||||||||||||| |||||||||| |||||||| Sbjct: 200 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 253 Score = 48.1 bits (24), Expect = 0.084 Identities = 60/72 (83%) Strand = Plus / Plus Query: 420 catggatccccagctgcttgagagggcccttgaagcgtctggagatgatttggatgatgc 479 ||||||||||||| |||| || | || ||||| || |||||||||||||||||| || Sbjct: 371 catggatccccagttgctcgaaggagctcttgatgcttctggagatgatttggattcagc 430 Query: 480 aatcaagagttt 491 ||| |||||||| Sbjct: 431 aataaagagttt 442
>dbj|AK073896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G12, full insert sequence Length = 1456 Score = 202 bits (102), Expect = 2e-48 Identities = 330/406 (81%) Strand = Plus / Plus Query: 671 ctgaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacgatgcac 730 |||||||||| || || ||||| ||||||||| ||||||| |||||||||| |||||| | Sbjct: 623 ctgaatgggttgagctatttgtcagagagatgacaaatgcatctgacatgggcgatgcgc 682 Query: 731 gggcccgtgcatcaagagctctggaagccttgacgaagtccatactggagggtgcaggag 790 | || || || ||||||||| | |||| ||| |||||| || ||||| || |||||| Sbjct: 683 gtgctcgcgcctcaagagctttagaagttttggagaagtcaatcgtggagcgtacaggag 742 Query: 791 ctgaagcagcgcagagcttgcatcaggagaacatgatgctcaaggagcagatgacggccg 850 |||| ||||| || | |||||| |||| || |||||||| |||||||| |||| | || Sbjct: 743 ctgatgcagcacaaaacttgcaaaaggaaaatatgatgcttaaggagcaattgaccgtcg 802 Query: 851 tcctgtcgcagaacgcggtcctgaagcgcgcggtggcaatccagcatgagcgacagaagg 910 | ||| ||||||| ||||| ||||| ||||| || || || |||||||| || |||| Sbjct: 803 tgctgcgagagaacgctgtcctcaagcgagcggtcgccattcaacatgagcgccaaaagg 862 Query: 911 agttcgacgagcgcagccacgaggtgcagggcctgaagcagctcgtcctgcagtaccagg 970 ||||||||||| | ||||| ||||| ||| | ||||||| || || |||||||||||| Sbjct: 863 agttcgacgagaggagccaggaggttcagagtttgaagcaacttgttgtgcagtaccagg 922 Query: 971 agcagctgaggactcttgagatcaacaactacgcgctgcagatgcatctgaagcaggccc 1030 |||| |||||||| || ||||| |||||||| |||||| |||||||||||||||||| | Sbjct: 923 agcaactgaggaccctagagataaacaactatgcgctgacgatgcatctgaagcaggctc 982 Query: 1031 agcagagcagctccatgcccgggcgctacaacccggacgtcttcta 1076 |||||| || |||||| ||||||| || ||| || ||||||||||| Sbjct: 983 agcagaacaactccatccccgggcacttcaatcctgacgtcttcta 1028 Score = 83.8 bits (42), Expect = 2e-12 Identities = 51/54 (94%) Strand = Plus / Plus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 293 |||||||||||||||||| ||||||||||||||| |||||||||| |||||||| Sbjct: 201 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 254 Score = 48.1 bits (24), Expect = 0.084 Identities = 60/72 (83%) Strand = Plus / Plus Query: 420 catggatccccagctgcttgagagggcccttgaagcgtctggagatgatttggatgatgc 479 ||||||||||||| |||| || | || ||||| || |||||||||||||||||| || Sbjct: 372 catggatccccagttgctcgaaggagctcttgatgcttctggagatgatttggattcagc 431 Query: 480 aatcaagagttt 491 ||| |||||||| Sbjct: 432 aataaagagttt 443
>gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, complete sequence Length = 1366 Score = 168 bits (85), Expect = 3e-38 Identities = 337/421 (80%) Strand = Plus / Minus Query: 656 caagtaacagtggccctgaatgggtcgatctttttgtgagagagatgtcaaatgcttctg 715 ||||||| | |||| | |||||||| || || ||||| |||||||||||||||||||||| Sbjct: 656 caagtaataatggctccgaatgggttgagctatttgtcagagagatgtcaaatgcttctg 597 Query: 716 acatggacgatgcacgggcccgtgcatcaagagctctggaagccttgacgaagtccatac 775 |||| || ||||||||||| ||||| ||||||||| |||| || ||| ||| || || Sbjct: 596 acatagatgatgcacgggctcgtgcgtcaagagctttggaggctttggagaaatcgattg 537 Query: 776 tggagggtgcaggagctgaagcagcgcagagcttgcatcaggagaacatgatgctcaagg 835 | ||| |||||||||||||||| | |||| | ||||| |||| |||||||||||||||| Sbjct: 536 tagagcgtgcaggagctgaagctacacagaacctgcataaggaaaacatgatgctcaagg 477 Query: 836 agcagatgacggccgtcctgtcgcagaacgcggtcctgaagcgcgcggtggcaatccagc 895 |||| |||| | || ||| |||| || || |||||||| || || || || || | Sbjct: 476 agcaactgactgttgttctgcgagagaatgctgtgctgaagcgggcagttgccattcaac 417 Query: 896 atgagcgacagaaggagttcgacgagcgcagccacgaggtgcagggcctgaagcagctcg 955 ||||||| || |||||||| |||||| | |||||||| ||| || ||||||| || | Sbjct: 416 atgagcgccaaaaggagtttgacgagaggtctcacgaggtccagagcttgaagcaacttg 357 Query: 956 tcctgcagtaccaggagcagctgaggactcttgagatcaacaactacgcgctgcagatgc 1015 | |||||||||||||||| || ||||| || ||||| |||||||| || || |||| Sbjct: 356 ttttgcagtaccaggagcaacttaggaccctagagataaacaactatgccctcacaatgc 297 Query: 1016 atctgaagcaggcccagcagagcagctccatgcccgggcgctacaacccggacgtcttct 1075 | || |||||||| ||||||| ||||||||| || ||||| | ||||||||| ||||||| Sbjct: 296 acctcaagcaggctcagcagaacagctccatacctgggcgtttcaacccggatgtcttct 237 Query: 1076 a 1076 | Sbjct: 236 a 236 Score = 85.7 bits (43), Expect = 4e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacga 290 |||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 1093 catgtctgcggtagtctgtggcaagaggtcctcctccatcttcgccgacga 1043 Score = 48.1 bits (24), Expect = 0.084 Identities = 69/84 (82%) Strand = Plus / Minus Query: 411 cttcccagccatggatccccagctgcttgagagggcccttgaagcgtctggagatgattt 470 |||||| | ||||||||||||| ||||||| | || || ||||| |||||||| || || Sbjct: 898 cttccccgacatggatccccagttgcttgaaaaagctctggaagcatctggagacgactt 839 Query: 471 ggatgatgcaatcaagagtttgaa 494 |||| ||| || ||||||||||| Sbjct: 838 ggattctgcgataaagagtttgaa 815
>gb|AY104704.1| Zea mays PCO133361 mRNA sequence Length = 1333 Score = 141 bits (71), Expect = 7e-30 Identities = 317/399 (79%) Strand = Plus / Plus Query: 666 tggccctgaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacga 725 |||| |||||||||| || || || || | ||||||| ||||||||||||||| |||| Sbjct: 708 tggctctgaatgggttgagctattagtcacagagatgagaaatgcttctgacataaacga 767 Query: 726 tgcacgggcccgtgcatcaagagctctggaagccttgacgaagtccatactggagggtgc 785 ||||||||| ||||| |||||||||||||| || ||| ||| | || | ||| |||| Sbjct: 768 tgcacgggctcgtgcgtcaagagctctggaggctttggagaaaacgattgtagagcgtgc 827 Query: 786 aggagctgaagcagcgcagagcttgcatcaggagaacatgatgctcaaggagcagatgac 845 |||||||||||| | || | | ||||| |||| ||||||||||||||||||||| |||| Sbjct: 828 aggagctgaagctacacaaaacctgcataaggaaaacatgatgctcaaggagcagttgac 887 Query: 846 ggccgtcctgtcgcagaacgcggtcctgaagcgcgcggtggcaatccagcatgagcgaca 905 | || ||| ||||| | || |||||||| || || || || ||||| ||||| || Sbjct: 888 tgttgttctgcgagagaactccgtgctgaagcgggcagtcgccattcagcacgagcgcca 947 Query: 906 gaaggagttcgacgagcgcagccacgaggtgcagggcctgaagcagctcgtcctgcagta 965 ||||||||||||||| | |||||||| ||| | ||||||| || || |||||||| Sbjct: 948 aaaggagttcgacgagaggtctcacgaggtccagaacttgaagcaacttgttctgcagta 1007 Query: 966 ccaggagcagctgaggactcttgagatcaacaactacgcgctgcagatgcatctgaagca 1025 ||||||||| | |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 1008 ccaggagcaagttaggactctagagatgaacaactacgccctcacaatgcatctcaagca 1067 Query: 1026 ggcccagcagagcagctccatgcccgggcgctacaaccc 1064 ||| || |||| ||||||||| || ||||| | |||||| Sbjct: 1068 ggctcaacagaacagctccatacctgggcgtttcaaccc 1106 Score = 85.7 bits (43), Expect = 4e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacga 290 |||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 270 catgtctgcggtagtctgtggcaagaggtcctcctccatcttcgccgacga 320 Score = 48.1 bits (24), Expect = 0.084 Identities = 69/84 (82%) Strand = Plus / Plus Query: 411 cttcccagccatggatccccagctgcttgagagggcccttgaagcgtctggagatgattt 470 |||||| | ||||||||| ||| ||||||| | || || ||||| ||||||||||| || Sbjct: 456 cttccccgacatggatccacagttgcttgaaaaagctctggaagcatctggagatgactt 515 Query: 471 ggatgatgcaatcaagagtttgaa 494 |||| |||||| || |||||||| Sbjct: 516 ggattctgcaataaaaagtttgaa 539
>gb|BT017489.1| Zea mays clone EL01N0413B02.c mRNA sequence Length = 1134 Score = 139 bits (70), Expect = 3e-29 Identities = 310/390 (79%) Strand = Plus / Plus Query: 666 tggccctgaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacga 725 |||| |||||||||| || || || || | ||||||| ||||||||||||||| |||| Sbjct: 506 tggctctgaatgggttgagctattagtcacagagatgagaaatgcttctgacataaacga 565 Query: 726 tgcacgggcccgtgcatcaagagctctggaagccttgacgaagtccatactggagggtgc 785 ||||||||| ||||| |||||||||||||| || ||| ||| | || | ||| |||| Sbjct: 566 tgcacgggctcgtgcgtcaagagctctggaggctttggagaaaacgattgtagagcgtgc 625 Query: 786 aggagctgaagcagcgcagagcttgcatcaggagaacatgatgctcaaggagcagatgac 845 |||||||||||| | || | | ||||| |||| ||||||||||||||||||||| |||| Sbjct: 626 aggagctgaagctacacaaaccctgcataaggaaaacatgatgctcaaggagcagttgac 685 Query: 846 ggccgtcctgtcgcagaacgcggtcctgaagcgcgcggtggcaatccagcatgagcgaca 905 | || ||| ||||| | || |||||||| || || || || ||||| ||||| || Sbjct: 686 tgttgttctgcgagagaactccgtgctgaagcgggcagtcgccattcagcacgagcgcca 745 Query: 906 gaaggagttcgacgagcgcagccacgaggtgcagggcctgaagcagctcgtcctgcagta 965 ||||||||||||||| | |||||||| ||| | ||||||| || || |||||||| Sbjct: 746 aaaggagttcgacgagaggtctcacgaggtccagaacttgaagcaacttgttctgcagta 805 Query: 966 ccaggagcagctgaggactcttgagatcaacaactacgcgctgcagatgcatctgaagca 1025 ||||||||| | |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 806 ccaggagcaagttaggactctagagatgaacaactacgccctcacaatgcatctcaagca 865 Query: 1026 ggcccagcagagcagctccatgcccgggcg 1055 ||| || |||| ||||||||| || ||||| Sbjct: 866 ggctcaacagaacagctccatacctgggcg 895 Score = 85.7 bits (43), Expect = 4e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacga 290 |||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 68 catgtctgcggtagtctgtggcaagaggtcctcctccatcttcgccgacga 118 Score = 48.1 bits (24), Expect = 0.084 Identities = 69/84 (82%) Strand = Plus / Plus Query: 411 cttcccagccatggatccccagctgcttgagagggcccttgaagcgtctggagatgattt 470 |||||| | ||||||||| ||| ||||||| | || || ||||| ||||||||||| || Sbjct: 254 cttccccgacatggatccacagttgcttgaaaaagctctggaagcatctggagatgactt 313 Query: 471 ggatgatgcaatcaagagtttgaa 494 |||| |||||| || |||||||| Sbjct: 314 ggattctgcaataaaaagtttgaa 337
>gb|AY105502.1| Zea mays PCO135520 mRNA sequence Length = 835 Score = 129 bits (65), Expect = 3e-26 Identities = 323/409 (78%) Strand = Plus / Plus Query: 656 caagtaacagtggccctgaatgggtcgatctttttgtgagagagatgtcaaatgcttctg 715 ||||||| | |||| |||||||||| || || ||||| || |||||| |||||||||||| Sbjct: 125 caagtaaaaatggctctgaatgggttgagctatttgtcagggagatgacaaatgcttctg 184 Query: 716 acatggacgatgcacgggcccgtgcatcaagagctctggaagccttgacgaagtccatac 775 |||| || ||||||||||| ||||| || |||||| |||| || ||| ||| || || Sbjct: 185 acatagatgatgcacgggctcgtgcgtccagagctttggaggctttggagaaatcaattg 244 Query: 776 tggagggtgcaggagctgaagcagcgcagagcttgcatcaggagaacatgatgctcaagg 835 | ||| |||||||||||||||| | |||| | | ||| |||| |||||||||||||| | Sbjct: 245 tagagcgtgcaggagctgaagctacacagaaccttcataaggaaaacatgatgctcaaag 304 Query: 836 agcagatgacggccgtcctgtcgcagaacgcggtcctgaagcgcgcggtggcaatccagc 895 |||| |||| | || ||| |||| || || |||||||| ||||| || || || | Sbjct: 305 agcaactgactgttgttctgcgagagaatgctgtgctgaagcgggcggttgccattcaac 364 Query: 896 atgagcgacagaaggagttcgacgagcgcagccacgaggtgcagggcctgaagcagctcg 955 ||||||| || |||||||| |||||| | |||||||| ||| || ||||||| || | Sbjct: 365 atgagcgccaaaaggagtttgacgagaggtctcacgaggtccagagcttgaagcaacttg 424 Query: 956 tcctgcagtaccaggagcagctgaggactcttgagatcaacaactacgcgctgcagatgc 1015 | |||||||||||||||| | ||||| || ||||| |||||||| || || |||| Sbjct: 425 ttttgcagtaccaggagcaagttaggacactagagataaacaactatgccctcacaatgc 484 Query: 1016 atctgaagcaggcccagcagagcagctccatgcccgggcgctacaaccc 1064 | || |||||||| ||||||||||||||||| || ||||| | |||||| Sbjct: 485 acctcaagcaggctcagcagagcagctccattcctgggcgtttcaaccc 533
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 83.8 bits (42), Expect = 2e-12 Identities = 51/54 (94%) Strand = Plus / Minus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 293 |||||||||||||||||| ||||||||||||||| |||||||||| |||||||| Sbjct: 25803160 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 25803107 Score = 79.8 bits (40), Expect = 2e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 989 agatcaacaactacgcgctgcagatgcatctgaagcaggcccagcagagcagctccatgc 1048 |||| |||||||| |||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 25800405 agataaacaactatgcgctgacgatgcatctgaagcaggctcagcagaacaactccatcc 25800346 Query: 1049 ccgggcgctacaacccggacgtcttcta 1076 |||||| || ||| || ||||||||||| Sbjct: 25800345 ccgggcacttcaatcctgacgtcttcta 25800318 Score = 79.8 bits (40), Expect = 2e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 860 agaacgcggtcctgaagcgcgcggtggcaatccagcatgagcgacagaaggagttcgacg 919 ||||||| ||||| ||||| ||||| || || || |||||||| || ||||||||||||| Sbjct: 25800631 agaacgctgtcctcaagcgagcggtcgccattcaacatgagcgccaaaaggagttcgacg 25800572 Query: 920 agcgcagccacgaggtgcagggcctgaagcagctcgtcctgcagtaccaggagcagctga 979 || | ||||| ||||| ||| | ||||||| || || |||||||||||||||| |||| Sbjct: 25800571 agaggagccaggaggttcagagtttgaagcaacttgttgtgcagtaccaggagcaactga 25800512 Query: 980 ggac 983 |||| Sbjct: 25800511 ggac 25800508
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 83.8 bits (42), Expect = 2e-12 Identities = 51/54 (94%) Strand = Plus / Minus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcgcggacgacct 293 |||||||||||||||||| ||||||||||||||| |||||||||| |||||||| Sbjct: 85364 catgtctgcggtagtctgtggcaagaggtcctccgccatcttcgccgacgacct 85311 Score = 79.8 bits (40), Expect = 2e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 989 agatcaacaactacgcgctgcagatgcatctgaagcaggcccagcagagcagctccatgc 1048 |||| |||||||| |||||| |||||||||||||||||| ||||||| || |||||| | Sbjct: 82609 agataaacaactatgcgctgacgatgcatctgaagcaggctcagcagaacaactccatcc 82550 Query: 1049 ccgggcgctacaacccggacgtcttcta 1076 |||||| || ||| || ||||||||||| Sbjct: 82549 ccgggcacttcaatcctgacgtcttcta 82522 Score = 79.8 bits (40), Expect = 2e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 860 agaacgcggtcctgaagcgcgcggtggcaatccagcatgagcgacagaaggagttcgacg 919 ||||||| ||||| ||||| ||||| || || || |||||||| || ||||||||||||| Sbjct: 82835 agaacgctgtcctcaagcgagcggtcgccattcaacatgagcgccaaaaggagttcgacg 82776 Query: 920 agcgcagccacgaggtgcagggcctgaagcagctcgtcctgcagtaccaggagcagctga 979 || | ||||| ||||| ||| | ||||||| || || |||||||||||||||| |||| Sbjct: 82775 agaggagccaggaggttcagagtttgaagcaacttgttgtgcagtaccaggagcaactga 82716 Query: 980 ggac 983 |||| Sbjct: 82715 ggac 82712
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcg 283 ||||||||| ||||| || || |||||||||||||||||||||| Sbjct: 4717962 catgtctgccgtagtgtgtgggaagaggtcctcctccatcttcg 4718005
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 240 catgtctgcggtagtctgcggcaagaggtcctcctccatcttcg 283 ||||||||| ||||| || || |||||||||||||||||||||| Sbjct: 90034 catgtctgccgtagtgtgtgggaagaggtcctcctccatcttcg 90077
>ref|NM_001052644.1| Oryza sativa (japonica cultivar-group) Os02g0184500 (Os02g0184500) mRNA, complete cds Length = 1333 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 420 catggatccccagctgcttgagagggcccttgaagcgtctggagatgatttggatgatgc 479 ||||||||||||| | ||||| || || ||||| || |||||||||||| | ||| ||| Sbjct: 266 catggatccccagttacttgaaagagctcttgaggcatctggagatgatatagattctgc 325 Query: 480 aatcaagagtttgaaggagctg 501 || ||||||||||| |||||| Sbjct: 326 tataaagagtttgaacgagctg 347
>dbj|AK105238.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B02, full insert sequence Length = 1333 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 420 catggatccccagctgcttgagagggcccttgaagcgtctggagatgatttggatgatgc 479 ||||||||||||| | ||||| || || ||||| || |||||||||||| | ||| ||| Sbjct: 266 catggatccccagttacttgaaagagctcttgaggcatctggagatgatatagattctgc 325 Query: 480 aatcaagagtttgaaggagctg 501 || ||||||||||| |||||| Sbjct: 326 tataaagagtttgaacgagctg 347
>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06, complete sequence Length = 174019 Score = 50.1 bits (25), Expect = 0.021 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcaagaggtcctcctccatcttcg 283 ||||||||||||||||||||||||| Sbjct: 73889 ggcaagaggtcctcctccatcttcg 73913
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 50.1 bits (25), Expect = 0.021 Identities = 25/25 (100%) Strand = Plus / Plus Query: 259 ggcaagaggtcctcctccatcttcg 283 ||||||||||||||||||||||||| Sbjct: 15902365 ggcaagaggtcctcctccatcttcg 15902389
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Minus Query: 384 cgcgctcctcggccagctccggg 406 ||||||||||||||||||||||| Sbjct: 2739508 cgcgctcctcggccagctccggg 2739486
>gb|AC183599.3| Pan troglodytes BAC clone CH251-508H15 from chromosome 9, complete sequence Length = 232195 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 303 acaggcctcctcctcccctccttccc 328 |||||||||||||||| ||||||||| Sbjct: 153935 acaggcctcctcctcctctccttccc 153910
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 30 atccgcccgccgtccgtcgcga 51 |||||||||||||||||||||| Sbjct: 332151 atccgcccgccgtccgtcgcga 332172
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1158 tgaagatgactagaaaatgttg 1179 |||||||||||||||||||||| Sbjct: 130198 tgaagatgactagaaaatgttg 130219
>gb|AY289941.1| Aplysia californica glutamate receptor subunit protein GluR3 mRNA, complete cds Length = 2800 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 491 tgaaggagctgcacctcatgga 512 |||||||||||||||||||||| Sbjct: 600 tgaaggagctgcacctcatgga 621
>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the 5'end of a novel gene (FLJ00318), a novel gene and two CpG islands, complete sequence Length = 156466 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 303 acaggcctcctcctcccctccttccc 328 |||||||||||||||| ||||||||| Sbjct: 91941 acaggcctcctcctcctctccttccc 91966
>gb|AC010543.9| Homo sapiens chromosome 16 clone RP11-440K14, complete sequence Length = 180286 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 298 ctccaacaggcctcctcctccc 319 |||||||||||||||||||||| Sbjct: 25542 ctccaacaggcctcctcctccc 25563
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 391 ctcggccagctccgggccgcct 412 |||||||||||||||||||||| Sbjct: 3762156 ctcggccagctccgggccgcct 3762135
>emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence Length = 116999 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1158 tgaagatgactagaaaatgttg 1179 |||||||||||||||||||||| Sbjct: 13580 tgaagatgactagaaaatgttg 13601
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 ctcggccagctccgggccgcc 411 ||||||||||||||||||||| Sbjct: 1266070 ctcggccagctccgggccgcc 1266050
>ref|XM_359981.1| Magnaporthe grisea 70-15 hypothetical protein (MG05356.4) partial mRNA Length = 3288 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 cagggcctgaagcagctcgtc 957 ||||||||||||||||||||| Sbjct: 2326 cagggcctgaagcagctcgtc 2346
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 ctcggccagctccgggccgcc 411 ||||||||||||||||||||| Sbjct: 89925 ctcggccagctccgggccgcc 89905
>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13, complete sequence Length = 161902 Score = 42.1 bits (21), Expect = 5.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 673 gaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacgatgca 729 ||||||||||| || |||||| |||||| ||| ||||||| ||||||| |||||| Sbjct: 111188 gaatgggtcgagctacttgtgaatgagatgacaactgcttctaacatggatgatgca 111132
>gb|BT014353.1| Lycopersicon esculentum clone 133630F, mRNA sequence Length = 1423 Score = 42.1 bits (21), Expect = 5.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 961 cagtaccaggagcagctgaggactcttgagatcaacaacta 1001 ||||||||||||||||| || || |||||| |||| ||||| Sbjct: 975 cagtaccaggagcagcttagaacccttgaggtcaataacta 1015
>gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, complete sequence Length = 227620 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cctcctcctcccctccttccc 328 ||||||||||||||||||||| Sbjct: 108717 cctcctcctcccctccttccc 108697
>gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, complete sequence Length = 227587 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cctcctcctcccctccttccc 328 ||||||||||||||||||||| Sbjct: 108685 cctcctcctcccctccttccc 108665
>gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence Length = 164663 Score = 42.1 bits (21), Expect = 5.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 314 cctcccctccttcccaccacagccc 338 |||||||||||||||||| |||||| Sbjct: 66698 cctcccctccttcccaccccagccc 66674
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 5.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 673 gaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacgatgca 729 ||||||||||| || |||||| |||||| ||| ||||||| ||||||| |||||| Sbjct: 13386715 gaatgggtcgagctacttgtgaatgagatgacaactgcttctaacatggatgatgca 13386659
>emb|AL360269.21| Human DNA sequence from clone RP11-192I3 on chromosome 1 Contains the WNT9A gene for wingless-type MMTV integration site family, member 9A and a CpG island, complete sequence Length = 141703 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 gcctcctcctcccctccttcc 327 ||||||||||||||||||||| Sbjct: 56466 gcctcctcctcccctccttcc 56446
>gb|AC154118.6| Mus musculus chromosome 19, clone RP24-340C10, complete sequence Length = 141422 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 cctcctcccctccttcccacc 331 ||||||||||||||||||||| Sbjct: 12631 cctcctcccctccttcccacc 12651
>gb|AC096317.6| Rattus norvegicus 1 BAC CH230-148F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 211459 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 cctcctcctcccctccttccc 328 ||||||||||||||||||||| Sbjct: 14552 cctcctcctcccctccttccc 14572
>gb|AC132949.4| Mus musculus BAC clone RP24-547H18 from chromosome 7, complete sequence Length = 206116 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1093 atgttgatgagccctggccct 1113 ||||||||||||||||||||| Sbjct: 76657 atgttgatgagccctggccct 76677
>emb|AL604022.21| Mouse DNA sequence from clone RP23-449P23 on chromosome 11 Contains the 3' end of a novel gene (4732452J19Rik), the Supt4h gene for suppressor of Ty 4 homolog (S. cerevisiae), a novel gene (A430104N18Rik), the Bzrap1 gene for benzodiazapine receptor associated protein 1, the Mpo gene for myeloperoxidase, a novel gene, the 3' end of the Lpo gene for lactoperoxidase and a CpG island, complete sequence Length = 92337 Score = 42.1 bits (21), Expect = 5.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 308 cctcctcctcccctccttcccacca 332 ||||||||||||||||| ||||||| Sbjct: 40328 cctcctcctcccctcctgcccacca 40304
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the Vamp2 gene for vesicle-associated membrane 2, the Per1 gene for period homolog 1 (Drosophila), the Hes7 gene for hairy and enhancer of split 7 (Drosophila), the Aloxe3 gene for arachidonate lipoxygenase 3, the Alox12b gene for arachidonate 12-lipoxygenase 12R type, the Alox15b gene for arachidonate 15-lipoxygenase second type, the Gucy2e gene for guanylate cyclase 2e, a novel gene, the gene for LYST-interacting protein LIP8 (Lip8-pending), the gene for the likely ortholog of H. sapiens trafficking protein particle complex 1 (TRAPPC1)), the Kcnab3 gene for potassium voltage-gated channel shaker-related subfamily beta member 3, a novel gene, the 3' end of the Chd3 gene for chromodomain helicase DNA binding protein 3 and six CpG islands, complete sequence Length = 261224 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1309 ttaatatatacacaaaacaat 1329 ||||||||||||||||||||| Sbjct: 139517 ttaatatatacacaaaacaat 139537
>emb|BX248391.22| Zebrafish DNA sequence from clone CH211-212M14 in linkage group 17, complete sequence Length = 202287 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1305 gtatttaatatatacacaaaa 1325 ||||||||||||||||||||| Sbjct: 161453 gtatttaatatatacacaaaa 161433
>emb|BX539349.17| Zebrafish DNA sequence from clone DKEY-74L17 in linkage group 17, complete sequence Length = 140881 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1305 gtatttaatatatacacaaaa 1325 ||||||||||||||||||||| Sbjct: 59798 gtatttaatatatacacaaaa 59818
>gb|AC154838.2| Mus musculus BAC clone RP23-64F2 from chromosome 14, complete sequence Length = 224431 Score = 42.1 bits (21), Expect = 5.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 304 caggcctcctcctcccctccttccc 328 ||||| ||||||||||||||||||| Sbjct: 66609 caggcttcctcctcccctccttccc 66585
>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1136D08 Length = 176635 Score = 42.1 bits (21), Expect = 5.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 673 gaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacgatgca 729 ||||||||||| || |||||| |||||| ||| ||||||| ||||||| |||||| Sbjct: 138184 gaatgggtcgagctacttgtgaatgagatgacaactgcttctaacatggatgatgca 138128
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_B07 Length = 118763 Score = 42.1 bits (21), Expect = 5.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 673 gaatgggtcgatctttttgtgagagagatgtcaaatgcttctgacatggacgatgca 729 ||||||||||| || |||||| |||||| ||| ||||||| ||||||| |||||| Sbjct: 23442 gaatgggtcgagctacttgtgaatgagatgacaactgcttctaacatggatgatgca 23386
>emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 in linkage group 13, complete sequence Length = 194184 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1158 tgaagatgactagaaaatgtt 1178 ||||||||||||||||||||| Sbjct: 29590 tgaagatgactagaaaatgtt 29610
>emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on chromosome 9, complete sequence Length = 192913 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cctcctcctcccctccttccc 328 ||||||||||||||||||||| Sbjct: 14012 cctcctcctcccctccttccc 13992
>gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosome 9, complete sequence Length = 219361 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 cctcctcctcccctccttccc 328 ||||||||||||||||||||| Sbjct: 1700 cctcctcctcccctccttccc 1680 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 202,554,348 Number of extensions: 12172572 Number of successful extensions: 280073 Number of sequences better than 10.0: 46 Number of HSP's gapped: 280066 Number of HSP's successfully gapped: 66 Length of query: 1357 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1334 Effective length of database: 18,503,978,556 Effective search space: 24684307393704 Effective search space used: 24684307393704 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)