ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf63m05 |
|---|---|
| Clone Library Name | barley_pub |
>Q7Z6J9:SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 - Homo sapiens (Human)| Length = 526 Score = 55.1 bits (131), Expect = 8e-07 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%) Frame = +3 Query: 588 SSSRVQFRNVASRARWVEEAGAAEVLDNKGKLWLTTGITRGGKLYYNVEEIGFLAERGAL 767 + RV+ A W E G E+ GK W T G + G+ + EE +L E G++ Sbjct: 67 AEQRVERLGSLVAAEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSI 126 Query: 768 VLLDDKDVTVGMEEIYRKIAGGSYGCSWLTFQAYKHLKLLGYIVGRYGVPWTIK-HSRSG 944 L +D+ + ++E Y+ + + ++L +Q + HLK LGY+V R+ + + R Sbjct: 127 HLF-HQDLPLSIQEAYQLLL-TDHTVTFLQYQVFSHLKRLGYVVRRFQPSSVLSPYERQL 184 Query: 945 EVTDSPESMDNTNLSFGRADAARNDITKLLKGIHIDRMYPSFEV----------RLPNSK 1094 + S + +++ + R+ ++ I K K + S + P K Sbjct: 185 NLDASVQHLEDGDGKRKRSSSSPRSINKKAKALDNSLQPKSLAASSPPPCSQPSQCPEEK 244 Query: 1095 FKKSS----PGAPSFLVCLLRDKP-PSRD 1166 ++SS PG P L+ L P P+R+ Sbjct: 245 PQESSPMKGPGGPFQLLGSLGPSPGPARE 273 Score = 40.4 bits (93), Expect = 0.020 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Frame = +3 Query: 1095 FKKSSPGAPSFLVCLLR-DKP-PSRDELETVENKFGGIPLKFCQVDNGRISFLSLGRVTL 1268 F+K++PG P +C+ D+P P L+ + + G +PL F VD+G ISF S TL Sbjct: 461 FRKNNPGKPYARMCISGFDEPVPDLCSLKRLSYQSGDVPLIFALVDHGDISFYSFRDFTL 520 Query: 1269 P 1271 P Sbjct: 521 P 521
>Q8C2A2:SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 - Mus musculus (Mouse)| Length = 525 Score = 54.3 bits (129), Expect = 1e-06 Identities = 33/107 (30%), Positives = 54/107 (50%) Frame = +3 Query: 588 SSSRVQFRNVASRARWVEEAGAAEVLDNKGKLWLTTGITRGGKLYYNVEEIGFLAERGAL 767 + RV+ A W E G E+ GK W T G + G+ + EE +L E G++ Sbjct: 67 AEERVERLGSLVAAEWKPEEGFVELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSI 126 Query: 768 VLLDDKDVTVGMEEIYRKIAGGSYGCSWLTFQAYKHLKLLGYIVGRY 908 L +D+ + ++E Y+ + S+L +Q + HLK LGY+V R+ Sbjct: 127 QLF-YQDLPLSIQEAYQLLLTED-TLSFLQYQVFSHLKRLGYVVRRF 171 Score = 42.4 bits (98), Expect = 0.005 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +3 Query: 1095 FKKSSPGAPSFLVCL--LRDKPPSRDELETVENKFGGIPLKFCQVDNGRISFLSLGRVTL 1268 F+K+SPG P +C+ D P L+ + + G +PL F VD+G ISF S TL Sbjct: 460 FRKNSPGKPYVRMCISGFDDPVPDLCSLKCLTYQSGDVPLIFALVDHGDISFYSFRDFTL 519 Query: 1269 P 1271 P Sbjct: 520 P 520
>Q74ZJ5:SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 - Ashbya gossypii (Yeast)| (Eremothecium gossypii) Length = 455 Score = 39.3 bits (90), Expect = 0.044 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 11/103 (10%) Frame = +3 Query: 624 RARWVEEAGAAEVLDNKGKLWLTTG-ITRGGKLYYNVEEIGFLAERG------ALVLLDD 782 +A W EE A + + +G T G + + G+ + + E +L ERG AL + D+ Sbjct: 87 KAYWEEEQRMARIPNARGSFTNTMGKVDKHGQCWLQLHEFVYLVERGTVSPYLALTVGDE 146 Query: 783 K----DVTVGMEEIYRKIAGGSYGCSWLTFQAYKHLKLLGYIV 899 K DV + ++++Y + F Y HLK LG+IV Sbjct: 147 KSNHEDVLLSVQDVYALFSSTE---ELDEFLVYAHLKRLGFIV 186
>Q9UY33:ENDA_PYRAB tRNA-splicing endonuclease - Pyrococcus abyssi| Length = 170 Score = 35.0 bits (79), Expect = 0.84 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Frame = +3 Query: 600 VQFRNVASRARWVEEAGAAEVLDNKGKLWLTTGITRGGKLYYNVEEIGFLAERGALVLLD 779 ++F R E ++ +N+G G +G KL+ ++ E +L ERG + +LD Sbjct: 5 IEFYLSGDRVYSTREKAINQLYNNRGY-----GELKGNKLFLSLIEAAYLVERGWIKVLD 59 Query: 780 DKDVTVGMEEIYR--KIAGGSYGCSWLTFQAYKHLKLLGYIV 899 + D + EEI++ K + +L YK L+ GYIV Sbjct: 60 E-DRELTFEEIFKLGKRKDEDFDIKYL---VYKDLRDRGYIV 97
>Q5R444:MEF2C_PONPY Myocyte-specific enhancer factor 2C - Pongo pygmaeus (Orangutan)| Length = 473 Score = 33.5 bits (75), Expect = 2.4 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Frame = -1 Query: 926 NSPGNTISPNNVAKQLQVLVSLEGKPGAPITPPCNLSIDFLHSYSYILVI--EKNQRPSF 753 NSPG +SP N+ K +Q A PP NL ++ +L+ KN PS Sbjct: 221 NSPGLLVSPGNLNKNMQ----------AKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSV 270 Query: 752 CQEPDLL--------DIVVQLATPCDAGGQPKLP 675 ++ DLL LATP + P LP Sbjct: 271 SEDVDLLLNQRINNSQSAQSLATPVVSVATPTLP 304
>Q8CFN5:MEF2C_MOUSE Myocyte-specific enhancer factor 2C - Mus musculus (Mouse)| Length = 474 Score = 33.5 bits (75), Expect = 2.4 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Frame = -1 Query: 926 NSPGNTISPNNVAKQLQVLVSLEGKPGAPITPPCNLSIDFLHSYSYILVI--EKNQRPSF 753 NSPG +SP N+ K +Q A PP NL ++ +L+ KN PS Sbjct: 221 NSPGLLVSPGNLNKNIQ----------AKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSV 270 Query: 752 CQEPDLL--------DIVVQLATPCDAGGQPKLP 675 ++ DLL LATP + P LP Sbjct: 271 SEDVDLLLNQRINNSQSAQSLATPVVSVATPTLP 304
>Q06413:MEF2C_HUMAN Myocyte-specific enhancer factor 2C - Homo sapiens (Human)| Length = 473 Score = 33.5 bits (75), Expect = 2.4 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Frame = -1 Query: 926 NSPGNTISPNNVAKQLQVLVSLEGKPGAPITPPCNLSIDFLHSYSYILVI--EKNQRPSF 753 NSPG +SP N+ K +Q A PP NL ++ +L+ KN PS Sbjct: 221 NSPGLLVSPGNLNKNMQ----------AKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSV 270 Query: 752 CQEPDLL--------DIVVQLATPCDAGGQPKLP 675 ++ DLL LATP + P LP Sbjct: 271 SEDVDLLLNQRINNSQSAQSLATPVVSVATPTLP 304
>O54479:PARE_CAUCR DNA topoisomerase 4 subunit B - Caulobacter crescentus (Caulobacter| vibrioides) Length = 695 Score = 33.1 bits (74), Expect = 3.2 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Frame = +1 Query: 295 RWSTAPAPCSGRPAAAISLNF*RERRDFLARAEQTRGTLSISLESFA---VRKGSAGSSS 465 +WS P+ + + +F DFLA E+T+G +I+ ESFA R+G AG+ Sbjct: 254 KWSCDPSRIHDQTPPEATFHFPNGLADFLA--ERTKGLTTITPESFAGRIERQGEAGAVE 311 Query: 466 W 468 W Sbjct: 312 W 312
>Q1CEH8:RCMNS_YERPN Regulator of cell morphogenesis and NO signaling - Yersinia pestis| (biovar Antiqua strain Nepal516) Length = 221 Score = 32.3 bits (72), Expect = 5.4 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Frame = -1 Query: 824 NLSIDFLHSYSYILVIEKNQRPSFCQEP--DLLDIVVQLATPCDAGGQPKLPLVVQHLRR 651 NL ID L + L E + + Q+P +L+ ++ P+L L+ + + R Sbjct: 45 NLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFIISRYHDRHREQLPELVLMAEKVER 104 Query: 650 TSLLHPSCPRRHIPELDSXXXXXXXXXXXXXXXXLPVVFRGNGESCPGSASPSALVAPRV 471 P+CPR EL + P++ RG G G V Sbjct: 105 VHGEKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAEHDAV 164 Query: 470 GHEL 459 G +L Sbjct: 165 GQQL 168
>Q8ZB88:RCMNS_YERPE Regulator of cell morphogenesis and NO signaling - Yersinia pestis| Length = 221 Score = 32.3 bits (72), Expect = 5.4 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Frame = -1 Query: 824 NLSIDFLHSYSYILVIEKNQRPSFCQEP--DLLDIVVQLATPCDAGGQPKLPLVVQHLRR 651 NL ID L + L E + + Q+P +L+ ++ P+L L+ + + R Sbjct: 45 NLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFIISRYHDRHREQLPELVLMAEKVER 104 Query: 650 TSLLHPSCPRRHIPELDSXXXXXXXXXXXXXXXXLPVVFRGNGESCPGSASPSALVAPRV 471 P+CPR EL + P++ RG G G V Sbjct: 105 VHGEKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAEHDAV 164 Query: 470 GHEL 459 G +L Sbjct: 165 GQQL 168
>Q1CBX2:RCMNS_YERPA Regulator of cell morphogenesis and NO signaling - Yersinia pestis| (biovar Antiqua strain Antiqua) Length = 221 Score = 32.3 bits (72), Expect = 5.4 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Frame = -1 Query: 824 NLSIDFLHSYSYILVIEKNQRPSFCQEP--DLLDIVVQLATPCDAGGQPKLPLVVQHLRR 651 NL ID L + L E + + Q+P +L+ ++ P+L L+ + + R Sbjct: 45 NLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFIISRYHDRHREQLPELVLMAEKVER 104 Query: 650 TSLLHPSCPRRHIPELDSXXXXXXXXXXXXXXXXLPVVFRGNGESCPGSASPSALVAPRV 471 P+CPR EL + P++ RG G G V Sbjct: 105 VHGEKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAEHDAV 164 Query: 470 GHEL 459 G +L Sbjct: 165 GQQL 168
>P38876:PTH_YEAST Peptidyl-tRNA hydrolase - Saccharomyces cerevisiae (Baker's yeast)| Length = 190 Score = 32.3 bits (72), Expect = 5.4 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 695 RHHTGWQAVLQCRGDRVLGRKRGVGSSR*QGCNCRNGGNLSKDCRGELWVLLAYLP-SLQ 871 R H G +++L+C G RV K +G R G R+ ++S+ WVL A P LQ Sbjct: 118 RGHNGLRSLLKCSGGRVPFAKLAIGIGREPGSRSRDPASVSR------WVLGALTPQELQ 171 Query: 872 AL 877 L Sbjct: 172 TL 173
>Q66F95:RCMNS_YERPS Regulator of cell morphogenesis and NO signaling - Yersinia| pseudotuberculosis Length = 221 Score = 32.0 bits (71), Expect = 7.1 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Frame = -1 Query: 824 NLSIDFLHSYSYILVIEKNQRPSFCQEP--DLLDIVVQLATPCDAGGQPKLPLVVQHLRR 651 NL ID L + L E + + Q+P +L+ ++ P+L L+ + + R Sbjct: 45 NLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFIISRYHDRHREQLPELVLMAEKVER 104 Query: 650 TSLLHPSCPRRHIPELDSXXXXXXXXXXXXXXXXLPVVFRGNGESCPGSASPSALVAPRV 471 P+CPR EL + P++ RG G G V Sbjct: 105 VHGDKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAEHDAV 164 Query: 470 GHEL 459 G +L Sbjct: 165 GQQL 168
>Q8WXI7:MUC16_HUMAN Mucin-16 - Homo sapiens (Human)| Length = 22152 Score = 31.6 bits (70), Expect = 9.2 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = -2 Query: 790 TSLSSRRTNAPLSAK-NPISSTL*YSLPPRVMPVVSQSFP-LLSNTSAAPASSTHRARDA 617 T SS T+ PL+ +P+SSTL S P +PV S P L+ T SS + + Sbjct: 9726 TRSSSSLTSLPLTTSLSPVSSTLLDSSPSSPLPVTSLILPGLVKTTEVLDTSSEPKTSSS 9785 Query: 616 TFLNWTLEDEGAASE 572 L+ T + A SE Sbjct: 9786 PNLSSTSVEIPATSE 9800 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 267,866,763 Number of extensions: 5969830 Number of successful extensions: 17197 Number of sequences better than 10.0: 14 Number of HSP's gapped: 17189 Number of HSP's successfully gapped: 16 Length of query: 507 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 389 Effective length of database: 68,319,629 Effective search space: 26576335681 Effective search space used: 26576335681 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
