Clone Information

BLAST Search Result

Clone Name	FLbaf63m05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001070132.1\| Oryza sativa (japonica cultivar-group) Os09g...	323	1e-84
2	dbj\|AK073194.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	323	1e-84
3	gb\|AC108763.2\| Oryza sativa (japonica cultivar-group) chromosome...	180	1e-41
4	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	180	1e-41
5	emb\|CT834418.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	165	6e-37
6	emb\|BX571657.1\| Wolinella succinogenes, complete genome; segment...	52	0.006
7	ref\|NM_001058370.1\| Oryza sativa (japonica cultivar-group) Os03g...	50	0.024
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.024
9	gb\|AC104487.3\| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom...	50	0.024
10	dbj\|AK119894.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.024
11	dbj\|AK119881.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.024
12	dbj\|AK119863.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.024
13	dbj\|AK066616.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.024
14	gb\|AC078993.20\| Homo sapiens Xp BAC RP11-431J24 (Roswell Park Ca...	48	0.094
15	gb\|AC004103.1\|AC004103 Homo sapiens Xp22 BAC GS-619J3 (Genome Sy...	48	0.094
16	gb\|CP000325.1\| Mycobacterium ulcerans Agy99, complete genome	46	0.37
17	gb\|AC119748.1\| Genomic sequence for Oryza sativa, Nipponbare str...	46	0.37
18	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	44	1.5
19	emb\|AL772258.9\| Mouse DNA sequence from clone RP23-337P24 on chr...	44	1.5
20	gb\|AC136520.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	5.8
21	gb\|AC137823.45\| Medicago truncatula clone mth2-14c17, complete s...	42	5.8
22	gb\|AC136519.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	5.8
23	gb\|AC116772.6\| Mus musculus chromosome 8, clone RP23-428C21, com...	42	5.8
24	gb\|AC151523.4\| Medicago truncatula chromosome 7 BAC clone mth2-1...	42	5.8
25	emb\|CR753837.14\| Zebrafish DNA sequence from clone DKEY-234K7 in...	42	5.8
26	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	5.8
27	emb\|AL450490.6\| Human DNA sequence from clone RP11-124N4 on chro...	42	5.8
28	emb\|AL359914.14\| Human DNA sequence from clone RP11-637B23 on ch...	42	5.8
29	gb\|AC154859.2\| Mus musculus BAC clone RP23-14B14 from chromosome...	42	5.8
30	emb\|BX322606.6\| Zebrafish DNA sequence from clone DKEY-40F12, co...	42	5.8
31	gb\|AC123816.4\| Mus musculus BAC clone RP24-254P6 from 8, complet...	42	5.8
32	emb\|AL607039.25\| Mouse DNA sequence from clone RP23-313J14 on ch...	42	5.8

>ref|NM_001070132.1| Oryza sativa (japonica cultivar-group) Os09g0504800 (Os09g0504800)
           mRNA, complete cds
          Length = 1028
 Score =  323 bits (163), Expect = 1e-84
 Identities = 298/343 (86%)
 Strand = Plus / Plus

                                                                       
Query: 594 tcgagagtccagttcaggaatgtggcgtcgcgggcacgatgggtggaggaggctggtgcg 653
           |||||||||||||||||||| ||||||||||| ||    ||| |||||||||||||||||
Sbjct: 167 tcgagagtccagttcaggaaggtggcgtcgcgcgcggtgtggctggaggaggctggtgcg 226

                                                                       
Query: 654 gcggaggtgttggacaacaaggggaagctttggctgaccaccggcatcacacggggtggc 713
           ||||||||  |||||| |||||| ||||| ||||||||||||||  |||  ||||  |||
Sbjct: 227 gcggaggttgtggacagcaagggcaagctctggctgaccaccggtgtcaaccgggacggc 286

                                                                       
Query: 714 aagctgtactacaatgtcgaggagatcgggttcttggcagaaagaggggcgttggttctt 773
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 287 aagctgtactacaatgtcgaggagattgggttcttggcagaaagaggggcattggttctt 346

                                                                       
Query: 774 ctcgatgacaaggatgtaactgtaggaatggaggaaatctatcgaaagattgcagggggg 833
           || ||| || ||| || |||  | |||||||||||||||||  |||||||||| || |||
Sbjct: 347 cttgattacgagggtgaaacaattggaatggaggaaatctacggaaagattgctggaggg 406

                                                                       
Query: 834 agttatgggtgctcctggcttaccttccaagcttacaagcacttgaagttgcttggctac 893
           |  |||||||||||||||  | ||||||||||||||||||||||||||||||| ||||| 
Sbjct: 407 aaatatgggtgctcctgggatgccttccaagcttacaagcacttgaagttgctcggctat 466

                                                      
Query: 894 attgttgggcgatatggtgttccctggactattaagcatagcc 936
           ||| |||| |||||||| |||||||||||  |||||| |||||
Sbjct: 467 attattggacgatatggcgttccctggacagttaagcgtagcc 509



 Score =  147 bits (74), Expect = 1e-31
 Identities = 161/190 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1062 ccatccttcgaagtgcgtctaccaaatagcaaatttaagaagtcatccccaggagcccct 1121
            |||||||| ||||||  |||||| |||||||||||||||||| |||||||||||| ||||
Sbjct: 641  ccatcctttgaagtgtatctaccgaatagcaaatttaagaagacatccccaggagaccct 700

                                                                        
Query: 1122 agcttccttgtatgccttttaagagacaagccaccctcaagggatgaactggaaaccgtg 1181
            || ||| |  ||||||| |||||  |||| ||||| |||||||| ||||| |||||||| 
Sbjct: 701  agtttcgtcctatgcctattaagcaacaaaccaccatcaagggaagaactagaaaccgtt 760

                                                                        
Query: 1182 gagaacaagtttggtggcattcctcttaaattctgccaagttgataatggacgtatcagc 1241
            || ||||||||||  ||||||||||| ||||| ||||| ||||| || |||||  |||||
Sbjct: 761  gaaaacaagtttgagggcattcctctgaaattttgccatgttgacaacggacgggtcagc 820

                      
Query: 1242 tttctctcct 1251
            || |||||||
Sbjct: 821  ttcctctcct 830



 Score = 46.1 bits (23), Expect = 0.37
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 520 tcgccgttgccgcggaagacgacggggaggagcaccagctcaa 562
           |||||||||||||||| || || || ||||||||||| |||||
Sbjct: 90  tcgccgttgccgcggaggatgatggcgaggagcaccatctcaa 132

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>dbj|AK073194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023G15, full
           insert sequence
          Length = 1030

 Score =  323 bits (163), Expect = 1e-84
 Identities = 298/343 (86%)
 Strand = Plus / Plus

                                                                       
Query: 594 tcgagagtccagttcaggaatgtggcgtcgcgggcacgatgggtggaggaggctggtgcg 653
           |||||||||||||||||||| ||||||||||| ||    ||| |||||||||||||||||
Sbjct: 169 tcgagagtccagttcaggaaggtggcgtcgcgcgcggtgtggctggaggaggctggtgcg 228

                                                                       
Query: 654 gcggaggtgttggacaacaaggggaagctttggctgaccaccggcatcacacggggtggc 713
           ||||||||  |||||| |||||| ||||| ||||||||||||||  |||  ||||  |||
Sbjct: 229 gcggaggttgtggacagcaagggcaagctctggctgaccaccggtgtcaaccgggacggc 288

                                                                       
Query: 714 aagctgtactacaatgtcgaggagatcgggttcttggcagaaagaggggcgttggttctt 773
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 289 aagctgtactacaatgtcgaggagattgggttcttggcagaaagaggggcattggttctt 348

                                                                       
Query: 774 ctcgatgacaaggatgtaactgtaggaatggaggaaatctatcgaaagattgcagggggg 833
           || ||| || ||| || |||  | |||||||||||||||||  |||||||||| || |||
Sbjct: 349 cttgattacgagggtgaaacaattggaatggaggaaatctacggaaagattgctggaggg 408

                                                                       
Query: 834 agttatgggtgctcctggcttaccttccaagcttacaagcacttgaagttgcttggctac 893
           |  |||||||||||||||  | ||||||||||||||||||||||||||||||| ||||| 
Sbjct: 409 aaatatgggtgctcctgggatgccttccaagcttacaagcacttgaagttgctcggctat 468

                                                      
Query: 894 attgttgggcgatatggtgttccctggactattaagcatagcc 936
           ||| |||| |||||||| |||||||||||  |||||| |||||
Sbjct: 469 attattggacgatatggcgttccctggacagttaagcgtagcc 511



 Score =  147 bits (74), Expect = 1e-31
 Identities = 161/190 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1062 ccatccttcgaagtgcgtctaccaaatagcaaatttaagaagtcatccccaggagcccct 1121
            |||||||| ||||||  |||||| |||||||||||||||||| |||||||||||| ||||
Sbjct: 643  ccatcctttgaagtgtatctaccgaatagcaaatttaagaagacatccccaggagaccct 702

                                                                        
Query: 1122 agcttccttgtatgccttttaagagacaagccaccctcaagggatgaactggaaaccgtg 1181
            || ||| |  ||||||| |||||  |||| ||||| |||||||| ||||| |||||||| 
Sbjct: 703  agtttcgtcctatgcctattaagcaacaaaccaccatcaagggaagaactagaaaccgtt 762

                                                                        
Query: 1182 gagaacaagtttggtggcattcctcttaaattctgccaagttgataatggacgtatcagc 1241
            || ||||||||||  ||||||||||| ||||| ||||| ||||| || |||||  |||||
Sbjct: 763  gaaaacaagtttgagggcattcctctgaaattttgccatgttgacaacggacgggtcagc 822

                      
Query: 1242 tttctctcct 1251
            || |||||||
Sbjct: 823  ttcctctcct 832



 Score = 46.1 bits (23), Expect = 0.37
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 520 tcgccgttgccgcggaagacgacggggaggagcaccagctcaa 562
           |||||||||||||||| || || || ||||||||||| |||||
Sbjct: 92  tcgccgttgccgcggaggatgatggcgaggagcaccatctcaa 134

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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBb0004A05, complete sequence
          Length = 157913

 Score =  180 bits (91), Expect = 1e-41
 Identities = 169/195 (86%)
 Strand = Plus / Plus

                                                                          
Query: 742    ggttcttggcagaaagaggggcgttggttcttctcgatgacaaggatgtaactgtaggaa 801
              |||||||||||||||||||||| ||||||||||| ||| || ||| || |||  | ||||
Sbjct: 146438 ggttcttggcagaaagaggggcattggttcttcttgattacgagggtgaaacaattggaa 146497

                                                                          
Query: 802    tggaggaaatctatcgaaagattgcaggggggagttatgggtgctcctggcttaccttcc 861
              |||||||||||||  |||||||||| || ||||  |||||||||||||||  | ||||||
Sbjct: 146498 tggaggaaatctacggaaagattgctggagggaaatatgggtgctcctgggatgccttcc 146557

                                                                          
Query: 862    aagcttacaagcacttgaagttgcttggctacattgttgggcgatatggtgttccctgga 921
              ||||||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||
Sbjct: 146558 aagcttacaagcacttgaagttgctcggctatattattggacgatatggcgttccctgga 146617

                             
Query: 922    ctattaagcatagcc 936
              |  |||||| |||||
Sbjct: 146618 cagttaagcgtagcc 146632



 Score =  121 bits (61), Expect = 8e-24
 Identities = 118/137 (86%)
 Strand = Plus / Plus

                                                                          
Query: 608    caggaatgtggcgtcgcgggcacgatgggtggaggaggctggtgcggcggaggtgttgga 667
              |||||| ||||||||||| ||    ||| |||||||||||||||||||||||||  ||||
Sbjct: 146095 caggaaggtggcgtcgcgcgcggtgtggctggaggaggctggtgcggcggaggttgtgga 146154

                                                                          
Query: 668    caacaaggggaagctttggctgaccaccggcatcacacggggtggcaagctgtactacaa 727
              || |||||| ||||| ||||||||||||||  |||  ||||  |||||||||||||||||
Sbjct: 146155 cagcaagggcaagctctggctgaccaccggtgtcaaccgggacggcaagctgtactacaa 146214

                               
Query: 728    tgtcgaggagatcgggt 744
              |||||||||||| ||||
Sbjct: 146215 tgtcgaggagattgggt 146231



 Score = 81.8 bits (41), Expect = 7e-12
 Identities = 89/105 (84%)
 Strand = Plus / Plus

                                                                          
Query: 1147   acaagccaccctcaagggatgaactggaaaccgtggagaacaagtttggtggcattcctc 1206
              |||| ||||| |||||||| ||||| |||||||| || ||||||||||  ||||||||||
Sbjct: 147505 acaaaccaccatcaagggaagaactagaaaccgttgaaaacaagtttgagggcattcctc 147564

                                                           
Query: 1207   ttaaattctgccaagttgataatggacgtatcagctttctctcct 1251
              | ||||| ||||| ||||| || |||||  ||||||| |||||||
Sbjct: 147565 tgaaattttgccatgttgacaacggacgggtcagcttcctctcct 147609



 Score = 77.8 bits (39), Expect = 1e-10
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                          
Query: 1062   ccatccttcgaagtgcgtctaccaaatagcaaatttaagaagtcatccccaggagcccct 1121
              |||||||| ||||||  |||||| |||||||||||||||||| |||||||||||| ||||
Sbjct: 146764 ccatcctttgaagtgtatctaccgaatagcaaatttaagaagacatccccaggagaccct 146823

                                     
Query: 1122   agcttccttgtatgccttttaag 1144
              || ||| |  ||||||| |||||
Sbjct: 146824 agtttcgtcctatgcctattaag 146846



 Score = 46.1 bits (23), Expect = 0.37
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 520    tcgccgttgccgcggaagacgacggggaggagcaccagctcaa 562
              |||||||||||||||| || || || ||||||||||| |||||
Sbjct: 145938 tcgccgttgccgcggaggatgatggcgaggagcaccatctcaa 145980

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score =  180 bits (91), Expect = 1e-41
 Identities = 169/195 (86%)
 Strand = Plus / Plus

                                                                            
Query: 742      ggttcttggcagaaagaggggcgttggttcttctcgatgacaaggatgtaactgtaggaa 801
                |||||||||||||||||||||| ||||||||||| ||| || ||| || |||  | ||||
Sbjct: 19212788 ggttcttggcagaaagaggggcattggttcttcttgattacgagggtgaaacaattggaa 19212847

                                                                            
Query: 802      tggaggaaatctatcgaaagattgcaggggggagttatgggtgctcctggcttaccttcc 861
                |||||||||||||  |||||||||| || ||||  |||||||||||||||  | ||||||
Sbjct: 19212848 tggaggaaatctacggaaagattgctggagggaaatatgggtgctcctgggatgccttcc 19212907

                                                                            
Query: 862      aagcttacaagcacttgaagttgcttggctacattgttgggcgatatggtgttccctgga 921
                ||||||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||
Sbjct: 19212908 aagcttacaagcacttgaagttgctcggctatattattggacgatatggcgttccctgga 19212967

                               
Query: 922      ctattaagcatagcc 936
                |  |||||| |||||
Sbjct: 19212968 cagttaagcgtagcc 19212982



 Score =  121 bits (61), Expect = 8e-24
 Identities = 118/137 (86%)
 Strand = Plus / Plus

                                                                            
Query: 608      caggaatgtggcgtcgcgggcacgatgggtggaggaggctggtgcggcggaggtgttgga 667
                |||||| ||||||||||| ||    ||| |||||||||||||||||||||||||  ||||
Sbjct: 19212445 caggaaggtggcgtcgcgcgcggtgtggctggaggaggctggtgcggcggaggttgtgga 19212504

                                                                            
Query: 668      caacaaggggaagctttggctgaccaccggcatcacacggggtggcaagctgtactacaa 727
                || |||||| ||||| ||||||||||||||  |||  ||||  |||||||||||||||||
Sbjct: 19212505 cagcaagggcaagctctggctgaccaccggtgtcaaccgggacggcaagctgtactacaa 19212564

                                 
Query: 728      tgtcgaggagatcgggt 744
                |||||||||||| ||||
Sbjct: 19212565 tgtcgaggagattgggt 19212581



 Score = 81.8 bits (41), Expect = 7e-12
 Identities = 89/105 (84%)
 Strand = Plus / Plus

                                                                            
Query: 1147     acaagccaccctcaagggatgaactggaaaccgtggagaacaagtttggtggcattcctc 1206
                |||| ||||| |||||||| ||||| |||||||| || ||||||||||  ||||||||||
Sbjct: 19213855 acaaaccaccatcaagggaagaactagaaaccgttgaaaacaagtttgagggcattcctc 19213914

                                                             
Query: 1207     ttaaattctgccaagttgataatggacgtatcagctttctctcct 1251
                | ||||| ||||| ||||| || |||||  ||||||| |||||||
Sbjct: 19213915 tgaaattttgccatgttgacaacggacgggtcagcttcctctcct 19213959



 Score = 77.8 bits (39), Expect = 1e-10
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1062     ccatccttcgaagtgcgtctaccaaatagcaaatttaagaagtcatccccaggagcccct 1121
                |||||||| ||||||  |||||| |||||||||||||||||| |||||||||||| ||||
Sbjct: 19213114 ccatcctttgaagtgtatctaccgaatagcaaatttaagaagacatccccaggagaccct 19213173

                                       
Query: 1122     agcttccttgtatgccttttaag 1144
                || ||| |  ||||||| |||||
Sbjct: 19213174 agtttcgtcctatgcctattaag 19213196



 Score = 46.1 bits (23), Expect = 0.37
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 520      tcgccgttgccgcggaagacgacggggaggagcaccagctcaa 562
                |||||||||||||||| || || || ||||||||||| |||||
Sbjct: 19212288 tcgccgttgccgcggaggatgatggcgaggagcaccatctcaa 19212330

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>emb|CT834418.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111M19, full
           insert sequence
          Length = 1078

 Score =  165 bits (83), Expect = 6e-37
 Identities = 167/195 (85%)
 Strand = Plus / Minus

                                                                       
Query: 742 ggttcttggcagaaagaggggcgttggttcttctcgatgacaaggatgtaactgtaggaa 801
           |||||||||||||||||||||| ||||||||||| ||| |  ||| || |||  | ||||
Sbjct: 226 ggttcttggcagaaagaggggcattggttcttcttgattatgagggtgaaacaattggaa 167

                                                                       
Query: 802 tggaggaaatctatcgaaagattgcaggggggagttatgggtgctcctggcttaccttcc 861
           |||||||||||||  |||||||||| || ||||  |||||||||||||||  | ||||||
Sbjct: 166 tggaggaaatctacggaaagattgctggagggaagtatgggtgctcctgggatgccttcc 107

                                                                       
Query: 862 aagcttacaagcacttgaagttgcttggctacattgttgggcgatatggtgttccctgga 921
           ||||||||||||||||||||||||| ||||| ||| |||| |||||||| |||||||| |
Sbjct: 106 aagcttacaagcacttgaagttgctcggctatattattggacgatatggcgttccctgca 47

                          
Query: 922 ctattaagcatagcc 936
           |  |||||| |||||
Sbjct: 46  cagttaagcgtagcc 32



 Score =  129 bits (65), Expect = 3e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                       
Query: 608 caggaatgtggcgtcgcgggcacgatgggtggaggaggctggtgcggcggaggtgttgga 667
           |||||| ||||||||||| ||    |||||||||||||||||||||||||||||  ||||
Sbjct: 567 caggaaggtggcgtcgcgcgcggtgtgggtggaggaggctggtgcggcggaggttgtgga 508

                                                                       
Query: 668 caacaaggggaagctttggctgaccaccggcatcacacggggtggcaagctgtactacaa 727
           || |||||| ||||| ||||||||||||||  |||  ||||  |||||||||||||||||
Sbjct: 507 cagcaagggcaagctctggctgaccaccggtgtcaaccgggacggcaagctgtactacaa 448

                            
Query: 728 tgtcgaggagatcgggt 744
           |||||||||||| ||||
Sbjct: 447 tgtcgaggagattgggt 431



 Score = 46.1 bits (23), Expect = 0.37
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 520 tcgccgttgccgcggaagacgacggggaggagcaccagctcaa 562
           |||||||||||||||| || || || ||||||||||| |||||
Sbjct: 722 tcgccgttgccgcggaggatgatggcgaggagcaccatctcaa 680

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>emb|BX571657.1| Wolinella succinogenes, complete genome; segment 1/7
          Length = 347961

 Score = 52.0 bits (26), Expect = 0.006
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 1344   taagcttgaatcatggtgaatgcttc 1369
              ||||||||||||||||||||||||||
Sbjct: 329417 taagcttgaatcatggtgaatgcttc 329392

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>ref|NM_001058370.1| Oryza sativa (japonica cultivar-group) Os03g0838100 (Os03g0838100)
           mRNA, complete cds
          Length = 3179

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 300 gtcaacggctccggcgccgtgctctggtc 328
           ||||||||||||||||||||| |||||||
Sbjct: 717 gtcaacggctccggcgccgtggtctggtc 745

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 300      gtcaacggctccggcgccgtgctctggtc 328
                ||||||||||||||||||||| |||||||
Sbjct: 35008274 gtcaacggctccggcgccgtggtctggtc 35008246



 Score = 46.1 bits (23), Expect = 0.37
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 301      tcaacggctccggcgccgtgctctggtcgtc 331
                ||||||||||| ||||||||||| |||||||
Sbjct: 11458698 tcaacggctccagcgccgtgctcgggtcgtc 11458728

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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
             sequence
          Length = 171376

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 300   gtcaacggctccggcgccgtgctctggtc 328
             ||||||||||||||||||||| |||||||
Sbjct: 97278 gtcaacggctccggcgccgtggtctggtc 97306

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>dbj|AK119894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-B12, full
           insert sequence
          Length = 3179

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 300 gtcaacggctccggcgccgtgctctggtc 328
           ||||||||||||||||||||| |||||||
Sbjct: 717 gtcaacggctccggcgccgtggtctggtc 745

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>dbj|AK119881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G09, full
           insert sequence
          Length = 3080

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 300 gtcaacggctccggcgccgtgctctggtc 328
           ||||||||||||||||||||| |||||||
Sbjct: 492 gtcaacggctccggcgccgtggtctggtc 520

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>dbj|AK119863.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-H10, full
           insert sequence
          Length = 3128

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 300 gtcaacggctccggcgccgtgctctggtc 328
           ||||||||||||||||||||| |||||||
Sbjct: 518 gtcaacggctccggcgccgtggtctggtc 546

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>dbj|AK066616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074M03, full
           insert sequence
          Length = 3051

 Score = 50.1 bits (25), Expect = 0.024
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 300 gtcaacggctccggcgccgtgctctggtc 328
           ||||||||||||||||||||| |||||||
Sbjct: 493 gtcaacggctccggcgccgtggtctggtc 521

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>gb|AC078993.20| Homo sapiens Xp BAC RP11-431J24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 214001

 Score = 48.1 bits (24), Expect = 0.094
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 78     gaagcagtgactggccggagtcttgtgg 105
              ||||||||||||||| ||||||||||||
Sbjct: 152674 gaagcagtgactggctggagtcttgtgg 152701

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>gb|AC004103.1|AC004103 Homo sapiens Xp22 BAC GS-619J3 (Genome Systems Human BAC library)
             complete sequence
          Length = 144368

 Score = 48.1 bits (24), Expect = 0.094
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 78    gaagcagtgactggccggagtcttgtgg 105
             ||||||||||||||| ||||||||||||
Sbjct: 69190 gaagcagtgactggctggagtcttgtgg 69217

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>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome
          Length = 5631606

 Score = 46.1 bits (23), Expect = 0.37
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 105     gccgttcccgacggcgacctggt 127
               |||||||||||||||||||||||
Sbjct: 1417544 gccgttcccgacggcgacctggt 1417522

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>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042L15, from chromosome 3, complete sequence
          Length = 172475

 Score = 46.1 bits (23), Expect = 0.37
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 301   tcaacggctccggcgccgtgctctggtcgtc 331
             ||||||||||| ||||||||||| |||||||
Sbjct: 12507 tcaacggctccagcgccgtgctcgggtcgtc 12537

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 617     ggcgtcgcgggcacgatgggtg 638
               ||||||||||||||||||||||
Sbjct: 1486175 ggcgtcgcgggcacgatgggtg 1486196

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>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete
              sequence
          Length = 200480

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1208   taaattctgccaagttgataatggac 1233
              ||||||||| ||||||||||||||||
Sbjct: 100755 taaattctgtcaagttgataatggac 100780

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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 533  ggaagacgacggggaggagca 553
            |||||||||||||||||||||
Sbjct: 3446 ggaagacgacggggaggagca 3466

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>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence
          Length = 135139

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    acttctgaagagaaagaaggg 373
              |||||||||||||||||||||
Sbjct: 113310 acttctgaagagaaagaaggg 113290

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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 533    ggaagacgacggggaggagca 553
              |||||||||||||||||||||
Sbjct: 103431 ggaagacgacggggaggagca 103451

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>gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, complete sequence
          Length = 232691

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1428   ttctcgagttgcctggttact 1448
              |||||||||||||||||||||
Sbjct: 174156 ttctcgagttgcctggttact 174176

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>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete sequence
          Length = 123340

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    acttctgaagagaaagaaggg 373
              |||||||||||||||||||||
Sbjct: 106400 acttctgaagagaaagaaggg 106420

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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5,
             complete sequence
          Length = 135495

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   agggactttttggccagggca 390
             |||||||||||||||||||||
Sbjct: 71457 agggactttttggccagggca 71477

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 533     ggaagacgacggggaggagca 553
               |||||||||||||||||||||
Sbjct: 6055877 ggaagacgacggggaggagca 6055897

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>emb|AL450490.6| Human DNA sequence from clone RP11-124N4 on chromosome X Contains the
             5' end of the DCX gene for doublecortex; lissencephaly
             X-linked (doublecortin), complete sequence
          Length = 49532

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1004  tgctgcccgcaatgacatcaccaaa 1028
             ||||||| |||||||||||||||||
Sbjct: 26101 tgctgcctgcaatgacatcaccaaa 26077

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>emb|AL359914.14| Human DNA sequence from clone RP11-637B23 on chromosome X Contains a H3
             histone, family 3B (H3F3B) pseudogene, the BMP15 gene for
             bone morphogenetic protein 15, and a high-mobility group
             box 1 (HMGB1) pseudogene, complete sequence
          Length = 125495

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   ccttgaaagttttgctgtgag 440
             |||||||||||||||||||||
Sbjct: 83808 ccttgaaagttttgctgtgag 83788

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>gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome 16, complete sequence
          Length = 200016

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1183   agaacaagtttggtggcattc 1203
              |||||||||||||||||||||
Sbjct: 138569 agaacaagtttggtggcattc 138589

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>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   agggactttttggccagggca 390
             |||||||||||||||||||||
Sbjct: 34576 agggactttttggccagggca 34596

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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1428 ttctcgagttgcctggttact 1448
            |||||||||||||||||||||
Sbjct: 9191 ttctcgagttgcctggttact 9211

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>emb|AL607039.25| Mouse DNA sequence from clone RP23-313J14 on chromosome 11, complete
              sequence
          Length = 147376

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1208   taaattctgccaagttgataatgga 1232
              |||||||| ||||||||||||||||
Sbjct: 138780 taaattctaccaagttgataatgga 138804


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 247,628,905
Number of extensions: 13699931
Number of successful extensions: 282132
Number of sequences better than 10.0: 32
Number of HSP's gapped: 282126
Number of HSP's successfully gapped: 47
Length of query: 1523
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1500
Effective length of database: 18,503,978,556
Effective search space: 27755967834000
Effective search space used: 27755967834000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result